IslandPathversion 1.0

IslandPath Analysis: Streptococcus pneumoniae CGSP14



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.55 STD DEV: 4.71
Streptococcus pneumoniae CGSP14, complete genome - 1..2209198
2206 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2102	 42.29	0	2092148..2092348	+	66	182685072	-	SPCG_2102	-	hypothetical protein
2103	 41.53	0	2092500..2092682	+	60	182685073	rpmF	SPCG_2103	-	50S ribosomal protein L32
2104	 37.33	0	2092698..2092847	+	49	182685074	rpmG	SPCG_2104	-	50S ribosomal protein L33
2105	 32.43	-1	2093339..2095324	-	661	182685075	pcpA	SPCG_2105	-	choline binding protein PcpA
2106	 34.97	0	2095659..2095841	+	60	182685076	-	SPCG_2106	-	degenerate transposase
2107	 39.62	0	2095912..2096229	+	105	182685077	-	SPCG_2107	-	degenerate transposase
2108	 38.64	0	2096234..2096497	+	87	182685078	-	SPCG_2108	-	degenerate transposase
2109	 37.92	0	2096567..2096893	-	108	182685079	-	SPCG_2109	-	hypothetical protein
2110	 38.54	0	2097128..2097223	+	31	182685080	-	SPCG_2110	-	hypothetical protein
2111	 45.99	+1	2097307..2099187	-	626	182685081	-	SPCG_2111	-	glycosyl hydrolase-related protein
2112	 47.05	+1	2099181..2100062	-	293	182685082	-	SPCG_2112	-	ROK family protein
2113	 44.72	+1	2100134..2102794	-	886	182685083	-	SPCG_2113	-	hypothetical protein
2114	 45.75	+1	2102870..2104174	-	434	182685085	-	SPCG_2114	-	hypothetical protein
2115	 30.21	-1	2104152..2104247	+	31	182685084	-	SPCG_2115	-	hypothetical protein
2116	 46.76	+1	2104321..2106405	+	694	182685086	-	SPCG_2116	-	cell wall antigen
2117	 45.95	+1	2106445..2108196	-	583	182685087	-	SPCG_2117	-	hypothetical protein
2118	 42.11	0	2108880..2110109	+	409	182685088	-	SPCG_2118	-	arginine deiminase
2119	 42.18	0	2110167..2111183	+	338	182685089	arcB	SPCG_2119	-	ornithine carbamoyltransferase
2120	 41.67	0	2111348..2112295	+	315	182685090	arcC	SPCG_2120	-	carbamate kinase
2121	 42.59	0	2112506..2114017	+	503	182685091	-	SPCG_2121	-	hypothetical protein
2122	 44.52	+1	2114039..2115370	+	443	182685092	-	SPCG_2122	-	hypothetical protein
2123	 38.20	0	2115978..2116244	-	88	182685093	-	SPCG_2123	-	hypothetical protein
2124	 42.44	0	2116583..2117482	-	299	182685094	-	SPCG_2124	-	SPFH domain-containing protein/band 7 family protein
2125	 41.41	0	2117612..2118763	-	383	182685095	adh2	SPCG_2125	-	alcohol dehydrogenase, iron-containing
2126	 41.77	0	2118909..2120675	-	588	182685096	fucI	SPCG_2126	-	L-fucose isomerase
2127	 40.74	0	2120688..2121416	-	242	182685097	fucA	SPCG_2127	-	L-fuculose phosphate aldolase
2128	 32.52	-1	2121431..2124517	-	1028	182685098	-	SPCG_2128	-	hypothetical protein
2129	 32.93	-1	2124459..2126675	-	738	182685099	-	SPCG_2129	-	alpha-galactosidase
2130	 33.71	-1	2126697..2128568	-	623	182685100	-	SPCG_2130	-	hypothetical protein
2131	 34.77	-1	2128574..2129893	-	439	182685101	-	SPCG_2131	-	glycosyl hydrolase
2132	 31.56	-1	2129890..2130735	-	281	182685102	-	SPCG_2132	-	sugar ABC transporter permease
2133	 31.61	-1	2130732..2131718	-	328	182685103	-	SPCG_2133	-	putative ABC-type sugar transport system, permease component
2134	 35.34	0	2131748..2133040	-	430	182685104	-	SPCG_2134	-	sugar ABC transporter, sugar-binding protein
2135	 35.40	0	2133069..2134517	-	482	182685105	fucK	SPCG_2135	-	L-fuculose kinase fucK, putative
2136	 34.50	-1	2134648..2135421	+	257	182685106	fcsR	SPCG_2136	-	fucose operon repressor, putative
2137	 42.56	0	2136592..2138097	-	501	182685107	-	SPCG_2137	-	zinc ABC transporter, zinc-binding lipoprotein
2138	 43.56	0	2138107..2138937	-	276	182685108	-	SPCG_2138	-	zinc ABC transporter, permease protein
2139	 45.39	+1	2138906..2139610	-	234	182685109	-	SPCG_2139	-	zinc ABC transporter, ATP-binding protein
2140	 40.72	0	2139610..2140110	-	166	182685110	adcR	SPCG_2140	-	adc operon repressor AdcR
2141	 40.58	0	2140205..2141488	-	427	182685111	dltD	SPCG_2141	-	dltD protein
2142	 37.50	0	2141466..2141705	-	79	182685112	dltC	SPCG_2142	-	D-alanine--poly(phosphoribitol) ligase subunit 2
2143	 41.20	0	2141719..2142963	-	414	182685113	dltB	SPCG_2143	-	dltB protein
2144	 44.48	+1	2142960..2144690	-	576	182685114	dltA	SPCG_2144	-	D-alanine--D-alanyl carrier protein ligase
2145	 35.56	0	2144711..2144845	-	44	182685115	-	SPCG_2145	-	hypothetical protein
2146	 33.50	-1	2145156..2146334	-	392	182685116	-	SPCG_2146	-	hypothetical protein
2147	 39.38	0	2146794..2147786	-	330	182685117	-	SPCG_2147	-	transposase, uncharacterized, truncation
2148	 37.94	0	2147790..2148071	-	93	182685118	-	SPCG_2148	-	hypothetical protein
2149	 37.73	0	2149111..2149770	+	219	182685119	-	SPCG_2149	-	hypothetical protein
2150	 42.16	0	2149857..2150060	-	67	182685120	-	SPCG_2150	-	hypothetical protein
2151	 33.33	-1	2150153..2150254	+	33	182685121	-	SPCG_2151	-	hypothetical protein
2152	 44.53	+1	2150251..2151009	-	252	182685122	glpF	SPCG_2152	-	glycerol uptake facilitator protein
2153	 44.72	+1	2151025..2152851	-	608	182685123	-	SPCG_2153	-	hypothetical protein
2154	 44.40	+1	2152893..2154401	-	502	182685124	glpK	SPCG_2154	-	glycerol kinase
2155	 41.39	0	2154560..2155987	-	475	182685125	-	SPCG_2155	-	hypothetical protein
2156	 45.36	+1	2156152..2157024	+	290	182685126	hslO	SPCG_2156	-	hsp33-like chaperonin
2157	 48.37	+1	2156981..2157991	+	336	182685127	-	SPCG_2157	-	NifR3 family TIM-barrel protein
2158	 41.01	0	2158221..2160383	-	720	182685128	pspC	SPCG_2158	-	choline binding protein A
2159	 33.90	-1	2160462..2160989	-	175	182685129	-	SPCG_2159	-	hypothetical protein
2160	 34.53	-1	2161084..2162415	-	443	182685130	-	SPCG_2160	-	sensor histidine kinase
2161	 36.39	0	2162412..2163065	-	217	182685131	-	SPCG_2161	-	DNA-binding response regulator
2162	 45.38	+1	2163707..2166139	-	810	182685132	-	SPCG_2162	-	ATP-dependent Clp protease, ATP-binding subunit
2163	 41.95	0	2166141..2166662	-	173	182685133	ctsR	SPCG_2163	-	transcriptional regulator CtsR
2164	 45.27	+1	2166718..2167446	-	242	182685134	-	SPCG_2164	-	ABC transporter, ATP-binding protein
2165	 39.98	0	2167446..2168453	-	335	182685135	-	SPCG_2165	-	ABC transporter, substrate-binding protein, putative
2166	 43.33	0	2168492..2169241	-	249	182685136	-	SPCG_2166	-	ABC transporter, permease protein
2167	 42.27	0	2169213..2169503	-	96	182685137	-	SPCG_2167	-	hypothetical protein
2168	 39.05	0	2169759..2171105	-	448	182685138	cbpD	SPCG_2168	-	choline binding protein D
2169	 34.08	-1	2171194..2171460	-	88	182685139	-	SPCG_2169	-	hypothetical protein
2170	 41.61	0	2171462..2172814	-	450	182685140	dnaC	SPCG_2170	-	replicative DNA helicase
2171	 36.42	0	2172858..2173310	-	150	182685141	rplI	SPCG_2171	-	50S ribosomal protein L9
2172	 37.99	0	2173307..2175280	-	657	182685142	-	SPCG_2172	-	DHH subfamily 1 protein
2173	 34.24	-1	2175416..2175964	-	182	182685143	-	SPCG_2173	-	ribosomal subunit interface protein
2174	 36.05	0	2176044..2176706	-	220	182685144	comFC	SPCG_2174	-	competence protein ComF, putative
2175	 40.03	0	2176703..2178001	-	432	182685145	comFA	SPCG_2175	-	helicase, putative
2176	 39.78	0	2178057..2178692	+	211	182685146	-	SPCG_2176	-	hypothetical protein
2177	 41.15	0	2178977..2179897	+	306	182685147	cycK	SPCG_2177	-	cysteine synthase
2178	 40.60	0	2180094..2180492	-	132	182685148	-	SPCG_2178	-	transposase
2179	 39.81	0	2180932..2181255	-	107	182685149	-	SPCG_2179	-	IS66 family Orf2
2180	 41.11	0	2181501..2182541	-	346	182685150	tsf	SPCG_2180	-	elongation factor Ts
2181	 41.67	0	2182620..2183447	-	275	182685151	rpsB	SPCG_2181	-	30S ribosomal protein S2
2182	 39.61	0	2183622..2184800	-	392	182685152	-	SPCG_2182	-	secreted 45 kd protein
2183	 32.93	-1	2184894..2185388	-	164	182685153	mreD	SPCG_2183	-	rod shpae-determining protein MreD, putative
2184	 35.65	0	2185388..2186206	-	272	182685154	mreC	SPCG_2184	-	rod shape-determining protein MreC
2185	 37.99	0	2186265..2187059	-	264	182685155	-	SPCG_2185	-	hypothetical protein
2186	 40.83	0	2187052..2187891	-	279	182685156	-	SPCG_2186	-	ABC transporter, ATP-binding protein
2187	 38.65	0	2187876..2188703	-	275	182685157	-	SPCG_2187	-	ABC transporter, ATP-binding protein
2188	 34.98	0	2188700..2189245	-	181	182685158	-	SPCG_2188	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
2189	 35.02	0	2189256..2190086	-	276	182685159	-	SPCG_2189	-	hypothetical protein
2190	 34.58	-1	2190119..2191402	-	427	182685160	-	SPCG_2190	-	M16 family peptidase
2191	 34.29	-1	2191399..2192649	-	416	182685161	-	SPCG_2191	-	hypothetical protein
2192	 36.31	0	2192808..2193176	+	122	182685162	-	SPCG_2192	-	hypothetical protein
2193	 34.61	-1	2193179..2194276	+	365	182685163	recF	SPCG_2193	-	recombination protein F
2194	 41.24	0	2194327..2195805	-	492	182685164	imdH	SPCG_2194	-	inositol-5-monophosphate dehydrogenase
2195	 38.89	0	2195957..2196982	-	341	182685165	trpS	SPCG_2195	-	tryptophanyl-tRNA synthetase
2196	 38.63	0	2197188..2198810	+	540	182685166	-	SPCG_2196	-	ABC transporter, ATP-binding protein
2197	 32.67	-1	2198872..2201424	+	850	182685167	-	SPCG_2197	-	ABC transporter, permease protein, putative
2198	 38.05	0	2201867..2202205	-	112	182685168	-	SPCG_2198	-	hypothetical protein
2199	 34.90	0	2202290..2203057	-	255	182685169	-	SPCG_2199	-	hypothetical protein
2200	 32.78	-1	2203236..2203778	+	180	182685170	-	SPCG_2200	-	TetR family transcriptional regulator
2201	 30.94	-1	2204021..2204773	-	250	182685171	comE	SPCG_2201	-	response regulator ComE
39.55	MEAN

4.71	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.