IslandPathversion 1.0

IslandPath Analysis: Streptococcus pneumoniae CGSP14



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.55 STD DEV: 4.71
Streptococcus pneumoniae CGSP14, complete genome - 1..2209198
2206 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2072	 40.50	0	2065614..2066966	+	450	182685042	-	SPCG_2072	-	maltose/maltodextrin ABC transporter, maltose/maltodextrin-binding protein
2073	 41.28	0	2067062..2068369	+	435	182685043	-	SPCG_2073	-	maltodextrin ABC transporter, permease protein
2074	 43.06	0	2068350..2069213	+	287	182685044	-	SPCG_2074	-	maltodextrin ABC transporter, permease protein
2075	 39.33	0	2069466..2070266	+	266	182685045	malA	SPCG_2075	-	malA protein
2076	 42.65	0	2070276..2071262	+	328	182685046	malR	SPCG_2076	-	maltose operon transcriptional repressor
2077	 38.39	0	2071311..2071646	+	111	182685047	-	SPCG_2077	-	hypothetical protein
2078	 40.76	0	2071688..2072629	-	313	182685048	-	SPCG_2078	-	hypothetical protein
2079	 45.63	+1	2072607..2074370	-	587	182685049	aspS	SPCG_2079	-	aspartyl-tRNA synthetase
2080	 42.19	0	2074489..2074680	-	63	182685050	-	SPCG_2080	-	hypothetical protein
2081	 40.69	0	2074722..2074952	-	76	182685051	-	SPCG_2081	-	hypothetical protein
2082	 39.56	0	2074970..2075611	-	213	182685052	-	SPCG_2082	-	hypothetical protein
2083	 32.92	-1	2075623..2076351	-	242	182685053	-	SPCG_2083	-	hypothetical protein
2084	 36.32	0	2076348..2076548	-	66	182685054	-	SPCG_2084	-	hypothetical protein
2085	 44.91	+1	2076545..2076760	-	71	182685055	-	SPCG_2085	-	transcriptional regulator, putative
2086	 31.62	-1	2076761..2077228	-	155	182685056	-	SPCG_2086	-	hypothetical protein
2087	 41.38	0	2077228..2077401	-	57	182685057	-	SPCG_2087	-	hypothetical protein
2088	 46.12	+1	2077461..2078750	-	429	182685058	hisS	SPCG_2088	-	histidyl-tRNA synthetase
2089	 38.46	0	2078828..2080075	-	415	182685059	-	SPCG_2089	-	hypothetical protein
2090	 41.50	0	2080292..2081638	+	448	182685060	-	SPCG_2090	-	IS1380-Spn1 transposase
2091	 37.79	0	2081974..2082825	-	283	182685061	-	SPCG_2091	-	transcriptional regulator MutR, putative
2092	 30.37	-1	2082800..2082934	-	44	182685062	-	SPCG_2092	-	hypothetical protein
2093	 43.86	0	2082949..2083290	+	113	182685063	-	SPCG_2093	-	hypothetical protein
2094	 42.42	0	2083354..2083518	+	54	182685064	-	SPCG_2094	-	histidyl-tRNA synthetase
2095	 47.59	+1	2083544..2085247	-	567	182685065	ilvD	SPCG_2095	-	dihydroxy-acid dehydratase
2096	 35.80	0	2085480..2086412	-	310	182685066	tktC	SPCG_2096	-	transketolase, C-terminal subunit
2097	 34.73	-1	2086409..2087266	-	285	182685067	tktN	SPCG_2097	-	transketolase, N-terminal subunit
2098	 36.30	0	2087270..2088616	-	448	182685068	ulaA	SPCG_2098	-	ascorbate-specific PTS system enzyme IIC
2099	 33.33	-1	2088629..2088913	-	94	182685069	-	SPCG_2099	-	PTS system, IIB component, putative
2100	 32.94	-1	2088917..2090947	-	676	182685070	-	SPCG_2100	-	BglG family transcriptional regulator
2101	 41.67	0	2091138..2092145	+	335	182685071	-	SPCG_2101	-	hypothetical protein
2102	 42.29	0	2092148..2092348	+	66	182685072	-	SPCG_2102	-	hypothetical protein
2103	 41.53	0	2092500..2092682	+	60	182685073	rpmF	SPCG_2103	-	50S ribosomal protein L32
2104	 37.33	0	2092698..2092847	+	49	182685074	rpmG	SPCG_2104	-	50S ribosomal protein L33
2105	 32.43	-1	2093339..2095324	-	661	182685075	pcpA	SPCG_2105	-	choline binding protein PcpA
2106	 34.97	0	2095659..2095841	+	60	182685076	-	SPCG_2106	-	degenerate transposase
2107	 39.62	0	2095912..2096229	+	105	182685077	-	SPCG_2107	-	degenerate transposase
2108	 38.64	0	2096234..2096497	+	87	182685078	-	SPCG_2108	-	degenerate transposase
2109	 37.92	0	2096567..2096893	-	108	182685079	-	SPCG_2109	-	hypothetical protein
2110	 38.54	0	2097128..2097223	+	31	182685080	-	SPCG_2110	-	hypothetical protein
2111	 45.99	+1	2097307..2099187	-	626	182685081	-	SPCG_2111	-	glycosyl hydrolase-related protein
2112	 47.05	+1	2099181..2100062	-	293	182685082	-	SPCG_2112	-	ROK family protein
2113	 44.72	+1	2100134..2102794	-	886	182685083	-	SPCG_2113	-	hypothetical protein
2114	 45.75	+1	2102870..2104174	-	434	182685085	-	SPCG_2114	-	hypothetical protein
2115	 30.21	-1	2104152..2104247	+	31	182685084	-	SPCG_2115	-	hypothetical protein
2116	 46.76	+1	2104321..2106405	+	694	182685086	-	SPCG_2116	-	cell wall antigen
2117	 45.95	+1	2106445..2108196	-	583	182685087	-	SPCG_2117	-	hypothetical protein
2118	 42.11	0	2108880..2110109	+	409	182685088	-	SPCG_2118	-	arginine deiminase
2119	 42.18	0	2110167..2111183	+	338	182685089	arcB	SPCG_2119	-	ornithine carbamoyltransferase
2120	 41.67	0	2111348..2112295	+	315	182685090	arcC	SPCG_2120	-	carbamate kinase
2121	 42.59	0	2112506..2114017	+	503	182685091	-	SPCG_2121	-	hypothetical protein
2122	 44.52	+1	2114039..2115370	+	443	182685092	-	SPCG_2122	-	hypothetical protein
2123	 38.20	0	2115978..2116244	-	88	182685093	-	SPCG_2123	-	hypothetical protein
2124	 42.44	0	2116583..2117482	-	299	182685094	-	SPCG_2124	-	SPFH domain-containing protein/band 7 family protein
2125	 41.41	0	2117612..2118763	-	383	182685095	adh2	SPCG_2125	-	alcohol dehydrogenase, iron-containing
2126	 41.77	0	2118909..2120675	-	588	182685096	fucI	SPCG_2126	-	L-fucose isomerase
2127	 40.74	0	2120688..2121416	-	242	182685097	fucA	SPCG_2127	-	L-fuculose phosphate aldolase
2128	 32.52	-1	2121431..2124517	-	1028	182685098	-	SPCG_2128	-	hypothetical protein
2129	 32.93	-1	2124459..2126675	-	738	182685099	-	SPCG_2129	-	alpha-galactosidase
2130	 33.71	-1	2126697..2128568	-	623	182685100	-	SPCG_2130	-	hypothetical protein
2131	 34.77	-1	2128574..2129893	-	439	182685101	-	SPCG_2131	-	glycosyl hydrolase
2132	 31.56	-1	2129890..2130735	-	281	182685102	-	SPCG_2132	-	sugar ABC transporter permease
2133	 31.61	-1	2130732..2131718	-	328	182685103	-	SPCG_2133	-	putative ABC-type sugar transport system, permease component
2134	 35.34	0	2131748..2133040	-	430	182685104	-	SPCG_2134	-	sugar ABC transporter, sugar-binding protein
2135	 35.40	0	2133069..2134517	-	482	182685105	fucK	SPCG_2135	-	L-fuculose kinase fucK, putative
2136	 34.50	-1	2134648..2135421	+	257	182685106	fcsR	SPCG_2136	-	fucose operon repressor, putative
2137	 42.56	0	2136592..2138097	-	501	182685107	-	SPCG_2137	-	zinc ABC transporter, zinc-binding lipoprotein
2138	 43.56	0	2138107..2138937	-	276	182685108	-	SPCG_2138	-	zinc ABC transporter, permease protein
2139	 45.39	+1	2138906..2139610	-	234	182685109	-	SPCG_2139	-	zinc ABC transporter, ATP-binding protein
2140	 40.72	0	2139610..2140110	-	166	182685110	adcR	SPCG_2140	-	adc operon repressor AdcR
2141	 40.58	0	2140205..2141488	-	427	182685111	dltD	SPCG_2141	-	dltD protein
2142	 37.50	0	2141466..2141705	-	79	182685112	dltC	SPCG_2142	-	D-alanine--poly(phosphoribitol) ligase subunit 2
2143	 41.20	0	2141719..2142963	-	414	182685113	dltB	SPCG_2143	-	dltB protein
2144	 44.48	+1	2142960..2144690	-	576	182685114	dltA	SPCG_2144	-	D-alanine--D-alanyl carrier protein ligase
2145	 35.56	0	2144711..2144845	-	44	182685115	-	SPCG_2145	-	hypothetical protein
2146	 33.50	-1	2145156..2146334	-	392	182685116	-	SPCG_2146	-	hypothetical protein
2147	 39.38	0	2146794..2147786	-	330	182685117	-	SPCG_2147	-	transposase, uncharacterized, truncation
2148	 37.94	0	2147790..2148071	-	93	182685118	-	SPCG_2148	-	hypothetical protein
2149	 37.73	0	2149111..2149770	+	219	182685119	-	SPCG_2149	-	hypothetical protein
2150	 42.16	0	2149857..2150060	-	67	182685120	-	SPCG_2150	-	hypothetical protein
2151	 33.33	-1	2150153..2150254	+	33	182685121	-	SPCG_2151	-	hypothetical protein
2152	 44.53	+1	2150251..2151009	-	252	182685122	glpF	SPCG_2152	-	glycerol uptake facilitator protein
2153	 44.72	+1	2151025..2152851	-	608	182685123	-	SPCG_2153	-	hypothetical protein
2154	 44.40	+1	2152893..2154401	-	502	182685124	glpK	SPCG_2154	-	glycerol kinase
2155	 41.39	0	2154560..2155987	-	475	182685125	-	SPCG_2155	-	hypothetical protein
2156	 45.36	+1	2156152..2157024	+	290	182685126	hslO	SPCG_2156	-	hsp33-like chaperonin
2157	 48.37	+1	2156981..2157991	+	336	182685127	-	SPCG_2157	-	NifR3 family TIM-barrel protein
2158	 41.01	0	2158221..2160383	-	720	182685128	pspC	SPCG_2158	-	choline binding protein A
2159	 33.90	-1	2160462..2160989	-	175	182685129	-	SPCG_2159	-	hypothetical protein
2160	 34.53	-1	2161084..2162415	-	443	182685130	-	SPCG_2160	-	sensor histidine kinase
2161	 36.39	0	2162412..2163065	-	217	182685131	-	SPCG_2161	-	DNA-binding response regulator
2162	 45.38	+1	2163707..2166139	-	810	182685132	-	SPCG_2162	-	ATP-dependent Clp protease, ATP-binding subunit
2163	 41.95	0	2166141..2166662	-	173	182685133	ctsR	SPCG_2163	-	transcriptional regulator CtsR
2164	 45.27	+1	2166718..2167446	-	242	182685134	-	SPCG_2164	-	ABC transporter, ATP-binding protein
2165	 39.98	0	2167446..2168453	-	335	182685135	-	SPCG_2165	-	ABC transporter, substrate-binding protein, putative
2166	 43.33	0	2168492..2169241	-	249	182685136	-	SPCG_2166	-	ABC transporter, permease protein
2167	 42.27	0	2169213..2169503	-	96	182685137	-	SPCG_2167	-	hypothetical protein
2168	 39.05	0	2169759..2171105	-	448	182685138	cbpD	SPCG_2168	-	choline binding protein D
2169	 34.08	-1	2171194..2171460	-	88	182685139	-	SPCG_2169	-	hypothetical protein
2170	 41.61	0	2171462..2172814	-	450	182685140	dnaC	SPCG_2170	-	replicative DNA helicase
2171	 36.42	0	2172858..2173310	-	150	182685141	rplI	SPCG_2171	-	50S ribosomal protein L9
39.55	MEAN

4.71	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.