IslandPathversion 1.0

IslandPath Analysis: Streptococcus pneumoniae CGSP14



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.55 STD DEV: 4.71
Streptococcus pneumoniae CGSP14, complete genome - 1..2209198
2206 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1995	 44.16	0	1981749..1983725	-	658	182684965	tktA	SPCG_1995	-	transketolase
1996	 40.75	0	1983839..1984930	-	363	182684966	-	SPCG_1996	-	hypothetical protein
1997	 33.09	-1	1985042..1986715	-	557	182684967	-	SPCG_1997	-	BglG family transcriptional regulator
1998	 42.98	0	1986894..1987598	-	234	182684968	araD	SPCG_1998	-	L-ribulose-5-phosphate 4-epimerase
1999	 39.83	0	1987600..1988061	-	153	182684969	-	SPCG_1999	-	hexulose-6-phosphate isomerase, putative
2000	 40.34	0	1988102..1988458	-	118	182684970	-	SPCG_2000	-	hexulose-6-phosphate isomerase, putative
2001	 43.54	0	1988462..1989127	-	221	182684971	sgh	SPCG_2001	-	hexulose-6-phosphate synthase, putative
2002	 39.92	0	1989144..1989629	-	161	182684972	-	SPCG_2002	-	PTS system, IIA component
2003	 37.94	0	1989706..1989987	-	93	182684973	-	SPCG_2003	-	PTS system, IIB component
2004	 39.49	0	1990010..1991536	-	508	182684974	ulaA	SPCG_2004	-	ascorbate-specific PTS system enzyme IIC
2005	 41.83	0	1991598..1992221	-	207	182684975	-	SPCG_2005	-	hypothetical protein
2006	 39.01	0	1992272..1993258	-	328	182684976	-	SPCG_2006	-	jag protein, putative
2007	 41.52	0	1993277..1994107	-	276	182684977	-	SPCG_2007	-	spoIIIJ family protein
2008	 37.63	0	1994076..1994447	-	123	182684978	rnpA	SPCG_2008	-	ribonuclease P
2009	 27.27	-2	1994464..1994595	-	43	182684979	-	SPCG_2009	-	hypothetical protein
2010	 40.38	0	1994596..1995816	-	406	182684980	-	SPCG_2010	-	acetate kinase
2011	 40.88	0	1995837..1996790	-	317	182684981	-	SPCG_2011	-	hypothetical protein
2012	 39.90	0	1996851..1997231	-	126	182684982	-	SPCG_2012	-	hypothetical protein
2013	 42.08	0	1997263..1997445	-	60	182684983	-	SPCG_2013	-	hypothetical protein
2014	 38.70	0	1997548..1997994	-	148	182684984	-	SPCG_2014	-	hypothetical protein
2015	 43.87	0	1997972..1998379	-	135	182684985	-	SPCG_2015	-	hypothetical protein
2016	 43.30	0	1998396..1998656	-	86	182684986	-	SPCG_2016	-	hypothetical protein
2017	 42.66	0	1998661..1999089	-	142	182684987	cglD	SPCG_2017	-	competence protein CglD
2018	 37.31	0	1999058..1999384	-	108	182684988	cglC	SPCG_2018	-	competence protein CglC
2019	 40.90	0	1999386..2000429	-	347	182684989	cglB	SPCG_2019	-	competence protein CglB
2020	 44.90	+1	2000350..2001291	-	313	182684990	cglA	SPCG_2020	-	competence protein CglA
2021	 38.44	0	2001367..2001738	-	123	182684991	-	SPCG_2021	-	hypothetical protein
2022	 40.98	0	2001883..2002941	-	352	182684992	adh	SPCG_2022	-	alcohol dehydrogenase, zinc-containing
2023	 44.36	+1	2003104..2004255	-	383	182684993	nagA	SPCG_2023	-	N-acetylglucosamine-6-phosphate deacetylase
2024	 40.98	0	2004408..2006225	-	605	182684994	-	SPCG_2024	-	hypothetical protein
2025	 44.71	+1	2006326..2007468	-	380	182684995	tgt	SPCG_2025	-	queuine tRNA-ribosyltransferase
2026	 40.09	0	2007598..2008455	+	285	182684996	-	SPCG_2026	-	hypothetical protein
2027	 44.34	+1	2008483..2009127	-	214	182684997	-	SPCG_2027	-	pyrrolidone-carboxylate peptidase
2028	 33.06	-1	2009234..2009593	-	119	182684998	-	SPCG_2028	-	hypothetical protein
2029	 40.38	0	2009604..2010029	-	141	182684999	marR	SPCG_2029	-	MarR family transcriptional regulator
2030	 42.86	0	2010349..2011461	-	370	182685000	-	SPCG_2030	-	lysM domain-containing protein
2031	 42.19	0	2011627..2012247	-	206	182685001	-	SPCG_2031	-	HAD superfamily hydrolase
2032	 43.95	0	2012251..2013531	-	426	182685002	-	SPCG_2032	-	MATE efflux family protein
2033	 41.35	0	2013592..2015076	-	494	182685003	thrC	SPCG_2033	-	threonine synthase
2034	 36.23	0	2015152..2016429	-	425	182685004	-	SPCG_2034	-	hypothetical protein
2035	 40.00	0	2022891..2023325	-	144	182685005	-	SPCG_2035	-	cytidine/deoxycytidylate deaminase family protein
2036	 40.59	0	2023339..2024799	-	486	182685006	gltX	SPCG_2036	-	glutamyl-tRNA synthetase
2037	 41.48	0	2024923..2026272	-	449	182685007	gpi	SPCG_2037	-	glucose-6-phosphate isomerase
2038	 28.89	-2	2026259..2026438	-	59	182685008	-	SPCG_2038	-	hypothetical protein
2039	 42.01	0	2026442..2027179	-	245	182685009	guaA	SPCG_2039	-	glutamine amidotransferase, class-I
2040	 42.00	0	2027270..2029081	-	603	182685010	-	SPCG_2040	-	ABC transporter, ATP-binding/permease protein
2041	 42.22	0	2029183..2029497	+	104	182685011	-	SPCG_2041	-	degenerate transposase
2042	 44.48	+1	2029828..2031522	-	564	182685012	-	SPCG_2042	-	ABC transporter, ATP-binding/permease protein
2043	 45.80	+1	2031669..2034242	-	857	182685013	hexA	SPCG_2043	-	DNA mismatch repair protein HexA
2044	 37.14	0	2034254..2034700	-	148	182685014	argR	SPCG_2044	-	transcriptional repressor, putative
2045	 42.32	0	2034836..2036527	+	563	182685015	argS	SPCG_2045	-	arginyl-tRNA synthetase
2046	 39.49	0	2036842..2037231	-	129	182685016	-	SPCG_2046	-	IS1381 transposase protein B
2047	 40.98	0	2037362..2037871	+	169	182685017	-	SPCG_2047	-	hypothetical protein
2048	 41.49	0	2037955..2038665	+	236	182685018	-	SPCG_2048	-	response regulator
2049	 42.19	0	2038662..2039993	+	443	182685019	-	SPCG_2049	-	sensor histidine kinase PnpS
2050	 39.08	0	2040097..2041035	+	312	182685020	-	SPCG_2050	-	phosphate ABC transporter, phosphate-binding protein
2051	 40.62	0	2041153..2042016	+	287	182685021	-	SPCG_2051	-	phosphate ABC transporter, permease protein
2052	 39.46	0	2042009..2042824	+	271	182685022	-	SPCG_2052	-	phosphate ABC transporter, permease protein
2053	 39.71	0	2042826..2043578	+	250	182685023	-	SPCG_2053	-	phosphate ABC transporter, ATP-binding protein
2054	 39.94	0	2043593..2044243	+	216	182685024	phoU	SPCG_2054	-	phosphate transport system regulatory protein PhoU
2055	 39.20	0	2044311..2044736	+	141	182685025	-	SPCG_2055	-	degenerate transposase
2056	 34.20	-1	2044910..2045368	-	152	182685026	-	SPCG_2056	-	transcriptional regulator
2057	 42.67	0	2045502..2046518	+	338	182685027	gpsA	SPCG_2057	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
2058	 44.00	0	2046540..2047439	+	299	182685028	galU	SPCG_2058	-	UTP-glucose-1-phosphate uridylyltransferase
2059	 43.17	0	2047506..2048186	-	226	182685029	-	SPCG_2059	-	hypothetical protein
2060	 41.76	0	2048167..2048712	-	181	182685030	-	SPCG_2060	-	5-formyltetrahydrofolate cyclo-ligase family protein
2061	 47.04	+1	2048718..2049848	-	376	182685031	-	SPCG_2061	-	M20/M25/M40 family peptidase
2062	 46.64	+1	2049916..2050614	-	232	182685032	-	SPCG_2062	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase, putative
2063	 40.61	0	2050844..2051929	-	361	182685033	-	SPCG_2063	-	hypothetical protein
2064	 42.90	0	2051820..2054297	-	825	182685034	pbp1B	SPCG_2064	-	penicillin-binding protein 1B
2065	 43.68	0	2054427..2055683	+	418	182685035	tyrS	SPCG_2065	-	tyrosyl-tRNA synthetase
2066	 37.63	0	2055761..2057833	-	690	182685036	ctpC	SPCG_2066	-	cation transporter E1-E2 family ATPase
2067	 34.94	0	2057826..2058137	-	103	182685037	-	SPCG_2067	-	hypothetical protein
2068	 41.70	0	2058256..2059104	+	282	182685038	rrmA	SPCG_2068	-	rRNA (guanine-N1-)-methyltransferase
2069	 34.90	0	2059727..2060299	+	190	182685039	-	SPCG_2069	-	hypothetical protein
2070	 41.17	0	2061344..2063602	-	752	182685040	malP	SPCG_2070	-	glycogen phosphorylase family protein
2071	 43.48	0	2063628..2065145	-	505	182685041	malM	SPCG_2071	-	4-alpha-glucanotransferase
2072	 40.50	0	2065614..2066966	+	450	182685042	-	SPCG_2072	-	maltose/maltodextrin ABC transporter, maltose/maltodextrin-binding protein
2073	 41.28	0	2067062..2068369	+	435	182685043	-	SPCG_2073	-	maltodextrin ABC transporter, permease protein
2074	 43.06	0	2068350..2069213	+	287	182685044	-	SPCG_2074	-	maltodextrin ABC transporter, permease protein
2075	 39.33	0	2069466..2070266	+	266	182685045	malA	SPCG_2075	-	malA protein
2076	 42.65	0	2070276..2071262	+	328	182685046	malR	SPCG_2076	-	maltose operon transcriptional repressor
2077	 38.39	0	2071311..2071646	+	111	182685047	-	SPCG_2077	-	hypothetical protein
2078	 40.76	0	2071688..2072629	-	313	182685048	-	SPCG_2078	-	hypothetical protein
2079	 45.63	+1	2072607..2074370	-	587	182685049	aspS	SPCG_2079	-	aspartyl-tRNA synthetase
2080	 42.19	0	2074489..2074680	-	63	182685050	-	SPCG_2080	-	hypothetical protein
2081	 40.69	0	2074722..2074952	-	76	182685051	-	SPCG_2081	-	hypothetical protein
2082	 39.56	0	2074970..2075611	-	213	182685052	-	SPCG_2082	-	hypothetical protein
2083	 32.92	-1	2075623..2076351	-	242	182685053	-	SPCG_2083	-	hypothetical protein
2084	 36.32	0	2076348..2076548	-	66	182685054	-	SPCG_2084	-	hypothetical protein
2085	 44.91	+1	2076545..2076760	-	71	182685055	-	SPCG_2085	-	transcriptional regulator, putative
2086	 31.62	-1	2076761..2077228	-	155	182685056	-	SPCG_2086	-	hypothetical protein
2087	 41.38	0	2077228..2077401	-	57	182685057	-	SPCG_2087	-	hypothetical protein
2088	 46.12	+1	2077461..2078750	-	429	182685058	hisS	SPCG_2088	-	histidyl-tRNA synthetase
2089	 38.46	0	2078828..2080075	-	415	182685059	-	SPCG_2089	-	hypothetical protein
2090	 41.50	0	2080292..2081638	+	448	182685060	-	SPCG_2090	-	IS1380-Spn1 transposase
2091	 37.79	0	2081974..2082825	-	283	182685061	-	SPCG_2091	-	transcriptional regulator MutR, putative
2092	 30.37	-1	2082800..2082934	-	44	182685062	-	SPCG_2092	-	hypothetical protein
2093	 43.86	0	2082949..2083290	+	113	182685063	-	SPCG_2093	-	hypothetical protein
2094	 42.42	0	2083354..2083518	+	54	182685064	-	SPCG_2094	-	histidyl-tRNA synthetase
39.55	MEAN

4.71	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.