IslandPathversion 1.0

IslandPath Analysis: Streptococcus pneumoniae CGSP14



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.55 STD DEV: 4.71
Streptococcus pneumoniae CGSP14, complete genome - 1..2209198
2206 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1950	 39.68	0	1932993..1933307	-	104	182684920	-	SPCG_1949	-	hypothetical protein
1951	 38.94	0	1933294..1933935	-	213	182684921	-	SPCG_1950	-	ABC transporter, ATP-binding protein
1952	 43.32	0	1933937..1935979	-	680	182684922	-	SPCG_1951	-	immunity protein, putative
1953	 43.10	0	1936044..1936340	-	98	182684923	-	SPCG_1952	-	hypothetical protein
1954	 33.11	-1	1936660..1937559	-	299	182684924	plcR	SPCG_1953	-	transcriptional regulator PlcR, putative
1955	 46.70	+1	1937631..1938191	-	186	182684925	-	SPCG_1954	-	primase-related protein
1956	 45.48	+1	1938191..1938964	-	257	182684926	-	SPCG_1955	-	hydrolase, putative
1957	 36.56	0	1939161..1939253	+	30	182684927	-	SPCG_1956	-	hypothetical protein
1958	 42.11	0	1939269..1940168	-	299	182684928	-	SPCG_1957	-	cell wall surface anchor family protein
1959	 46.67	+1	1940452..1940586	-	44	182684929	rpmH	SPCG_1958	-	50S ribosomal protein L34
1960	 44.86	+1	1940731..1941945	-	404	182684930	aspC	SPCG_1959	-	aspartate aminotransferase
1961	 34.95	0	1942101..1942409	-	102	182684931	-	SPCG_1960	-	hypothetical protein
1962	 44.19	0	1942493..1943008	+	171	182684932	-	SPCG_1961	-	universal stress protein
1963	 43.34	0	1943043..1944461	-	472	182684933	-	SPCG_1962	-	cof family protein
1964	 45.69	+1	1944497..1945459	+	320	182684934	ansB	SPCG_1963	-	L-asparaginase, putative
1965	 40.73	0	1945755..1946795	-	346	182684935	ccpA	SPCG_1964	-	catabolite control protein A
1966	 45.00	+1	1947189..1947788	-	199	182684936	-	SPCG_1966	-	DNA-binding response regulator
1967	 39.71	0	1947789..1948886	-	365	182684937	-	SPCG_1967	-	sensor histidine kinase, putative
1968	 40.17	0	1948886..1949689	-	267	182684938	-	SPCG_1968	-	hypothetical protein
1969	 39.89	0	1949625..1950509	-	294	182684939	-	SPCG_1969	-	ABC transporter, ATP-binding protein
1970	 40.51	0	1950496..1950690	-	64	182684940	-	SPCG_1970	-	hypothetical protein
1971	 37.61	0	1950777..1950893	-	38	182684941	-	SPCG_1971	-	hypothetical protein
1972	 37.29	0	1957572..1958051	-	159	182684942	comX2	SPCG_1972	-	competence-specific global transcription modulator
1973	 33.88	-1	1958173..1958724	-	183	182684943	nusG	SPCG_1973	-	transcription antitermination protein NusG
1974	 32.77	-1	1958764..1958940	-	58	182684944	secE	SPCG_1974	-	translocase
1975	 40.02	0	1959245..1960516	+	423	182684945	-	SPCG_1975	-	putative IS1202 transposase
1976	 41.48	0	1960934..1963129	-	731	182684946	pbp2A	SPCG_1976	-	penicillin-binding protein 2A
1977	 39.38	0	1963216..1964091	+	291	182684947	rluD	SPCG_1977	-	ribosomal large subunit pseudouridine synthase D
1978	 36.66	0	1964197..1965489	+	430	182684948	-	SPCG_1978	-	IS1167, transposase
1979	 41.39	0	1965579..1966658	-	359	182684949	gapA	SPCG_1979	-	glyceraldehyde-3-phosphate dehydrogenase
1980	 38.33	0	1966806..1967765	-	319	182684950	-	SPCG_1980	-	hypothetical protein
1981	 38.05	0	1967851..1968189	-	112	182684951	-	SPCG_1981	-	IS630-Spn1, transposase Orf2
1982	 36.31	0	1968347..1968715	-	122	182684952	-	SPCG_1982	-	IS630-Spn1, transposase Orf1
1983	 41.89	0	1968828..1969727	-	299	182684953	nadC	SPCG_1983	-	nicotinate-nucleotide pyrophosphorylase
1984	 43.17	0	1969937..1971247	+	436	182684954	-	SPCG_1984	-	membrane protein
1985	 31.28	-1	1971629..1971823	-	64	182684955	-	SPCG_1985	-	hypothetical protein
1986	 35.12	0	1972283..1973011	-	242	182684956	-	SPCG_1986	-	GntR family transcriptional regulator
1987	 38.29	0	1973127..1974578	+	483	182684957	-	SPCG_1987	-	glycosy hydrolase family protein
1988	 35.03	0	1974596..1975891	+	431	182684958	-	SPCG_1988	-	PTS system, IIC component
1989	 35.92	0	1975857..1976204	+	115	182684959	-	SPCG_1989	-	PTS system, IIB component
1990	 35.78	0	1976183..1976509	+	108	182684960	-	SPCG_1990	-	PTS system, IIA component
1991	 42.54	0	1977495..1980167	-	890	182684961	adhE	SPCG_1991	-	alcohol dehydrogenase, iron-containing
1992	 38.44	0	1980446..1980856	-	136	182684962	-	SPCG_1992	-	hypothetical protein
1993	 38.69	0	1980858..1981286	-	142	182684963	-	SPCG_1993	-	phosphotyrosine protein phosphatase
1994	 36.00	0	1981333..1981632	-	99	182684964	yajC	SPCG_1994	-	preprotein translocase subunit YajC
1995	 44.16	0	1981749..1983725	-	658	182684965	tktA	SPCG_1995	-	transketolase
1996	 40.75	0	1983839..1984930	-	363	182684966	-	SPCG_1996	-	hypothetical protein
1997	 33.09	-1	1985042..1986715	-	557	182684967	-	SPCG_1997	-	BglG family transcriptional regulator
1998	 42.98	0	1986894..1987598	-	234	182684968	araD	SPCG_1998	-	L-ribulose-5-phosphate 4-epimerase
1999	 39.83	0	1987600..1988061	-	153	182684969	-	SPCG_1999	-	hexulose-6-phosphate isomerase, putative
2000	 40.34	0	1988102..1988458	-	118	182684970	-	SPCG_2000	-	hexulose-6-phosphate isomerase, putative
2001	 43.54	0	1988462..1989127	-	221	182684971	sgh	SPCG_2001	-	hexulose-6-phosphate synthase, putative
2002	 39.92	0	1989144..1989629	-	161	182684972	-	SPCG_2002	-	PTS system, IIA component
2003	 37.94	0	1989706..1989987	-	93	182684973	-	SPCG_2003	-	PTS system, IIB component
2004	 39.49	0	1990010..1991536	-	508	182684974	ulaA	SPCG_2004	-	ascorbate-specific PTS system enzyme IIC
2005	 41.83	0	1991598..1992221	-	207	182684975	-	SPCG_2005	-	hypothetical protein
2006	 39.01	0	1992272..1993258	-	328	182684976	-	SPCG_2006	-	jag protein, putative
2007	 41.52	0	1993277..1994107	-	276	182684977	-	SPCG_2007	-	spoIIIJ family protein
2008	 37.63	0	1994076..1994447	-	123	182684978	rnpA	SPCG_2008	-	ribonuclease P
2009	 27.27	-2	1994464..1994595	-	43	182684979	-	SPCG_2009	-	hypothetical protein
2010	 40.38	0	1994596..1995816	-	406	182684980	-	SPCG_2010	-	acetate kinase
2011	 40.88	0	1995837..1996790	-	317	182684981	-	SPCG_2011	-	hypothetical protein
2012	 39.90	0	1996851..1997231	-	126	182684982	-	SPCG_2012	-	hypothetical protein
2013	 42.08	0	1997263..1997445	-	60	182684983	-	SPCG_2013	-	hypothetical protein
2014	 38.70	0	1997548..1997994	-	148	182684984	-	SPCG_2014	-	hypothetical protein
2015	 43.87	0	1997972..1998379	-	135	182684985	-	SPCG_2015	-	hypothetical protein
2016	 43.30	0	1998396..1998656	-	86	182684986	-	SPCG_2016	-	hypothetical protein
2017	 42.66	0	1998661..1999089	-	142	182684987	cglD	SPCG_2017	-	competence protein CglD
2018	 37.31	0	1999058..1999384	-	108	182684988	cglC	SPCG_2018	-	competence protein CglC
2019	 40.90	0	1999386..2000429	-	347	182684989	cglB	SPCG_2019	-	competence protein CglB
2020	 44.90	+1	2000350..2001291	-	313	182684990	cglA	SPCG_2020	-	competence protein CglA
2021	 38.44	0	2001367..2001738	-	123	182684991	-	SPCG_2021	-	hypothetical protein
2022	 40.98	0	2001883..2002941	-	352	182684992	adh	SPCG_2022	-	alcohol dehydrogenase, zinc-containing
2023	 44.36	+1	2003104..2004255	-	383	182684993	nagA	SPCG_2023	-	N-acetylglucosamine-6-phosphate deacetylase
2024	 40.98	0	2004408..2006225	-	605	182684994	-	SPCG_2024	-	hypothetical protein
2025	 44.71	+1	2006326..2007468	-	380	182684995	tgt	SPCG_2025	-	queuine tRNA-ribosyltransferase
2026	 40.09	0	2007598..2008455	+	285	182684996	-	SPCG_2026	-	hypothetical protein
2027	 44.34	+1	2008483..2009127	-	214	182684997	-	SPCG_2027	-	pyrrolidone-carboxylate peptidase
2028	 33.06	-1	2009234..2009593	-	119	182684998	-	SPCG_2028	-	hypothetical protein
2029	 40.38	0	2009604..2010029	-	141	182684999	marR	SPCG_2029	-	MarR family transcriptional regulator
2030	 42.86	0	2010349..2011461	-	370	182685000	-	SPCG_2030	-	lysM domain-containing protein
2031	 42.19	0	2011627..2012247	-	206	182685001	-	SPCG_2031	-	HAD superfamily hydrolase
2032	 43.95	0	2012251..2013531	-	426	182685002	-	SPCG_2032	-	MATE efflux family protein
2033	 41.35	0	2013592..2015076	-	494	182685003	thrC	SPCG_2033	-	threonine synthase
2034	 36.23	0	2015152..2016429	-	425	182685004	-	SPCG_2034	-	hypothetical protein
2035	 40.00	0	2022891..2023325	-	144	182685005	-	SPCG_2035	-	cytidine/deoxycytidylate deaminase family protein
2036	 40.59	0	2023339..2024799	-	486	182685006	gltX	SPCG_2036	-	glutamyl-tRNA synthetase
2037	 41.48	0	2024923..2026272	-	449	182685007	gpi	SPCG_2037	-	glucose-6-phosphate isomerase
2038	 28.89	-2	2026259..2026438	-	59	182685008	-	SPCG_2038	-	hypothetical protein
2039	 42.01	0	2026442..2027179	-	245	182685009	guaA	SPCG_2039	-	glutamine amidotransferase, class-I
2040	 42.00	0	2027270..2029081	-	603	182685010	-	SPCG_2040	-	ABC transporter, ATP-binding/permease protein
2041	 42.22	0	2029183..2029497	+	104	182685011	-	SPCG_2041	-	degenerate transposase
2042	 44.48	+1	2029828..2031522	-	564	182685012	-	SPCG_2042	-	ABC transporter, ATP-binding/permease protein
2043	 45.80	+1	2031669..2034242	-	857	182685013	hexA	SPCG_2043	-	DNA mismatch repair protein HexA
2044	 37.14	0	2034254..2034700	-	148	182685014	argR	SPCG_2044	-	transcriptional repressor, putative
2045	 42.32	0	2034836..2036527	+	563	182685015	argS	SPCG_2045	-	arginyl-tRNA synthetase
2046	 39.49	0	2036842..2037231	-	129	182685016	-	SPCG_2046	-	IS1381 transposase protein B
2047	 40.98	0	2037362..2037871	+	169	182685017	-	SPCG_2047	-	hypothetical protein
2048	 41.49	0	2037955..2038665	+	236	182685018	-	SPCG_2048	-	response regulator
2049	 42.19	0	2038662..2039993	+	443	182685019	-	SPCG_2049	-	sensor histidine kinase PnpS
39.55	MEAN

4.71	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.