IslandPathversion 1.0

IslandPath Analysis: Streptococcus pneumoniae CGSP14



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.55 STD DEV: 4.71
Streptococcus pneumoniae CGSP14, complete genome - 1..2209198
2206 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1847	 45.78	+1	1829649..1830371	-	240	182684817	rluB	SPCG_1847	-	ribosomal large subunit pseudouridine synthase B
1848	 44.39	+1	1830358..1830927	-	189	182684818	scpB	SPCG_1848	-	segregation and condensation protein B
1849	 45.27	+1	1830946..1831674	-	242	182684819	scpA	SPCG_1849	-	segregation and condensation protein A
1850	 42.78	0	1831674..1832414	-	246	182684820	xerD	SPCG_1850	-	tyrosine recombinase
1851	 44.59	+1	1832405..1832866	-	153	182684821	-	SPCG_1851	-	CBS domain-containing protein
1852	 47.32	+1	1832863..1833384	-	173	182684822	-	SPCG_1852	-	hypothetical protein
1853	 42.43	0	1833360..1834370	-	336	182684823	-	SPCG_1853	-	HAM1 protein
1854	 48.55	+1	1834328..1835122	-	264	182684824	murI	SPCG_1854	-	glutamate racemase
1855	 38.28	0	1835329..1835631	-	100	182684825	-	SPCG_1855	-	hypothetical protein
1856	 41.64	0	1835833..1837458	-	541	182684826	dexS	SPCG_1856	-	dextran glucosidase DexS, putative
1857	 43.77	0	1837636..1839753	-	705	182684827	treP	SPCG_1857	-	trehalose PTS system, IIABC components
1858	 42.05	0	1839788..1840498	+	236	182684828	treR	SPCG_1858	-	trehalose operon transcriptional repressor
1859	 38.92	0	1840653..1841171	+	172	182684829	-	SPCG_1859	-	degenerate transposase
1860	 36.36	0	1841452..1841979	+	175	182684830	-	SPCG_1860	-	degenerate transposase
1861	 41.06	0	1842054..1843049	-	331	182684831	amiF	SPCG_1861	-	oligopeptide ABC transporter, ATP-binding protein AmiF
1862	 42.32	0	1842991..1844058	-	355	182684832	amiE	SPCG_1862	-	oligopeptide ABC transporter, ATP-binding protein AmiE
1863	 39.91	0	1844067..1844993	-	308	182684833	amiD	SPCG_1863	-	oligopeptide ABC transporter, permease protein AmiD
1864	 39.35	0	1844993..1846489	-	498	182684834	amiC	SPCG_1864	-	oligopeptide ABC transporter, permease protein AmiC
1865	 38.99	0	1846556..1848535	-	659	182684835	amiA	SPCG_1865	-	oligopeptide ABC transporter, oligopeptide-binding protein AmiA
1866	 37.94	0	1849221..1850414	-	397	182684836	-	SPCG_1866	-	hypothetical protein
1867	 37.81	0	1850552..1852024	-	490	182684837	-	SPCG_1867	-	sucrose phosphorylase
1868	 42.55	0	1852205..1852345	-	46	182684838	-	SPCG_1868	-	hypothetical protein
1869	 42.19	0	1852352..1853209	-	285	182684839	-	SPCG_1869	-	sugar ABC transporter, permease protein
1870	 42.20	0	1853199..1854089	-	296	182684840	-	SPCG_1870	-	sugar ABC transporter, permease protein
1871	 43.10	0	1854079..1855338	-	419	182684841	-	SPCG_1871	-	sugar ABC transporter, sugar-binding protein
1872	 37.36	0	1855373..1857535	-	720	182684842	aga	SPCG_1872	-	alpha-galactosidase
1873	 36.70	0	1857643..1858503	+	286	182684843	msmR	SPCG_1873	-	msm operon regulatory protein
1874	 36.11	0	1858500..1859435	+	311	182684844	birA	SPCG_1874	-	biotin--protein ligase
1875	 37.76	0	1866338..1867693	-	451	182684846	-	SPCG_1875	-	RNA methyltransferase
1876	 36.46	0	1867663..1868526	+	287	182684845	-	SPCG_1876	-	aminoglycoside phosphotransferase, putative
1877	 36.29	0	1868536..1869312	+	258	182684847	recX	SPCG_1877	-	recA regulator RecX
1878	 38.01	0	1869401..1869934	+	177	182684848	-	SPCG_1878	-	hypothetical protein
1879	 22.22	-2	1870291..1870497	-	68	182684849	-	SPCG_1879	-	hypothetical protein
1880	 37.07	0	1870657..1871886	+	409	182684850	-	SPCG_1880	-	IS1167, transposase
1881	 44.30	+1	1871986..1873608	-	540	182684851	groEL	SPCG_1881	-	chaperonin GroEL
1882	 44.56	+1	1873624..1873908	-	94	182684852	groES	SPCG_1882	-	co-chaperonin GroES
1883	 43.43	0	1874178..1874573	-	131	182684853	ssbB	SPCG_1883	-	single-strand DNA-binding protein
1884	 45.41	+1	1874650..1875411	-	253	182684854	ydfG	SPCG_1884	-	short chain dehydrogenase/reductase family oxidoreductase
1885	 44.66	+1	1875444..1876070	-	208	182684855	-	SPCG_1885	-	hypothetical protein
1886	 41.19	0	1876086..1876403	-	105	182684856	-	SPCG_1886	-	thioredoxin, putative
1887	 44.33	+1	1876400..1876699	-	99	182684857	-	SPCG_1887	-	hypothetical protein
1888	 36.57	0	1877036..1877251	-	71	182684858	-	SPCG_1888	-	hypothetical protein
1889	 40.44	0	1877388..1878062	-	224	182684859	-	SPCG_1889	-	hypothetical protein
1890	 42.89	0	1878068..1878517	-	149	182684860	-	SPCG_1890	-	hypothetical protein
1891	 44.64	+1	1878628..1879131	-	167	182684861	-	SPCG_1891	-	PAP2 family protein
1892	 41.87	0	1879128..1879490	-	120	182684862	-	SPCG_1892	-	hypothetical protein
1893	 44.09	0	1879556..1880587	-	343	182684863	-	SPCG_1893	-	ABC transporter, ATP-binding protein
1894	 42.09	0	1880594..1881415	-	273	182684864	-	SPCG_1894	-	ABC transporter, permease protein
1895	 34.19	-1	1881432..1881548	-	38	182684865	-	SPCG_1895	-	hypothetical protein
1896	 43.19	0	1881557..1881901	-	114	182684866	-	SPCG_1896	-	MarR family transcriptional regulator
1897	 42.82	0	1882025..1882741	-	238	182684867	-	SPCG_1897	-	hypothetical protein
1898	 41.95	0	1883622..1885037	-	471	182684868	ply	SPCG_1898	-	pneumolysin
1899	 38.69	0	1885048..1885458	-	136	182684869	-	SPCG_1899	-	hypothetical protein
1900	 40.39	0	1885451..1886059	-	202	182684870	-	SPCG_1900	-	hypothetical protein
1901	 41.09	0	1886072..1886548	-	158	182684871	-	SPCG_1901	-	hypothetical protein
1902	 34.85	0	1886655..1886786	+	43	182684872	-	SPCG_1902	-	degenerate transposase
1903	 37.88	0	1886791..1887054	+	87	182684873	-	SPCG_1903	-	degenerate transposase
1904	 37.16	0	1887819..1888079	-	86	182684874	-	SPCG_1904	-	hypothetical protein
1905	 34.77	-1	1888138..1888692	-	184	182684875	-	SPCG_1905	-	hypothetical protein
1906	 38.38	0	1888679..1888777	-	32	182684876	-	SPCG_1906	-	hypothetical protein
1907	 34.34	-1	1888839..1888937	-	32	182684877	-	SPCG_1907	-	hypothetical protein
1908	 35.04	0	1888880..1889464	-	194	182684878	-	SPCG_1908	-	hypothetical protein
1909	 33.57	-1	1889872..1890297	-	141	182684879	-	SPCG_1909	-	hypothetical protein
1910	 31.67	-1	1890426..1890785	-	119	182684880	-	SPCG_1910	-	hypothetical protein
1911	 28.40	-2	1891024..1891185	-	53	182684881	-	SPCG_1965	-	type II restriction-modification system regulatory protein, putative
1912	 46.39	+1	1891531..1892487	-	318	182684882	lytA	SPCG_1911	-	autolysin
1913	 41.72	0	1892863..1894233	-	456	182684883	dinF	SPCG_1912	-	MATE efflux family protein DinF
1914	 41.73	0	1894540..1895706	-	388	182684884	recA	SPCG_1913	-	recombinase A
1915	 44.95	+1	1895761..1897017	-	418	182684885	cinA	SPCG_1914	-	competence damage-inducible protein A
1916	 38.54	0	1897102..1898118	-	338	182684886	lytR	SPCG_1915	-	transcriptional regulator, putative
1917	 41.23	0	1898126..1898644	-	172	182684887	-	SPCG_1916	-	acetyltransferase
1918	 39.86	0	1898634..1899077	-	147	182684888	-	SPCG_1917	-	hypothetical protein
1919	 35.67	0	1899163..1899804	-	213	182684889	-	SPCG_1918	-	hypothetical protein
1920	 33.10	-1	1900165..1901028	-	287	182684890	plcR	SPCG_1919	-	transcriptional regulator PlcR, putative
1921	 32.75	-1	1901217..1901387	+	56	182684891	-	SPCG_1920	-	hypothetical protein
1922	 39.98	0	1901837..1903852	+	671	182684892	-	SPCG_1921	-	hypothetical protein
1923	 40.44	0	1903854..1904486	+	210	182684893	-	SPCG_1922	-	ABC transporter, ATP-binding protein
1924	 42.03	0	1905432..1905845	-	137	182684894	ndk	SPCG_1923	-	nucleoside diphosphate kinase
1925	 46.14	+1	1905956..1909633	-	1225	182684895	rpoC	SPCG_1924	-	DNA-directed RNA polymerase beta' subunit
1926	 45.74	+1	1909666..1912140	-	824	182684896	-	SPCG_1925	-	hypothetical protein
1927	 41.89	0	1912182..1913315	-	377	182684897	-	SPCG_1926	-	hypothetical protein
1928	 37.96	0	1913732..1913839	+	35	182684898	-	SPCG_1927	-	hypothetical protein
1929	 40.17	0	1913960..1915291	-	443	182684899	-	SPCG_1928	-	CBS domain-containing protein
1930	 43.15	0	1915582..1916406	-	274	182684900	endA	SPCG_1929	-	DNA-entry nuclease
1931	 46.96	+1	1916626..1917909	-	427	182684901	murA	SPCG_1930	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
1932	 41.81	0	1918221..1919258	-	345	182684902	-	SPCG_1931	-	hypothetical protein
1933	 40.49	0	1919242..1919730	-	162	182684903	kdtB	SPCG_1932	-	phosphopantetheine adenylyltransferase
1934	 44.07	0	1919720..1920259	-	179	182684904	-	SPCG_1933	-	type II DNA modification methyltransferase, putative
1935	 43.50	0	1920324..1921316	-	330	182684906	asnA	SPCG_1934	-	asparagine synthetase AsnA
1936	 29.09	-2	1921290..1921454	+	54	182684905	-	SPCG_1935	-	hypothetical protein
1937	 42.66	0	1921428..1922135	-	235	182684907	-	SPCG_1936	-	membrane protein
1938	 40.84	0	1922167..1922925	-	252	182684908	-	SPCG_1937	-	spoU rRNA methylase family protein
1939	 42.65	0	1922941..1923219	+	92	182684909	acyP	SPCG_1938	-	acylphosphatase
1940	 44.01	0	1923297..1924223	+	308	182684910	-	SPCG_1939	-	oxaA-like protein precursor
1941	 43.65	0	1924298..1925092	-	264	182684911	pflC	SPCG_1940	-	pyruvate formate-lyase-activating enzyme
1942	 45.32	+1	1925218..1926468	-	416	182684912	lysA	SPCG_1941	-	diaminopimelate decarboxylase
1943	 42.03	0	1926535..1927362	-	275	182684913	purR	SPCG_1942	-	purine operon repressor
1944	 43.98	0	1927629..1928633	-	334	182684914	cbf1	SPCG_1943	-	cmp-binding-factor 1
1945	 45.57	+1	1928560..1929858	-	432	182684915	-	SPCG_1944	-	competence-induced protein Ccs50
1946	 44.59	+1	1929818..1930501	-	227	182684916	-	SPCG_1945	-	hypothetical protein
39.55	MEAN

4.71	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.