IslandPathversion 1.0

IslandPath Analysis: Streptococcus pneumoniae CGSP14



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.55 STD DEV: 4.71
Streptococcus pneumoniae CGSP14, complete genome - 1..2209198
2206 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
139	 27.18	-2	138129..139070	+	313	182683109	-	SPCG_0139	-	hypothetical protein
140	 26.32	-2	139099..140637	+	512	182683110	-	SPCG_0140	-	hypothetical protein
141	 30.95	-1	140643..141398	+	251	182683111	-	SPCG_0141	-	hypothetical protein
142	 29.24	-2	141411..142583	+	390	182683112	ugd	SPCG_0142	-	UDP-glucose dehydrogenase
143	 39.86	0	142954..143841	+	295	182683113	mutR	SPCG_0143	-	transcriptional regulator
144	 33.33	-1	144111..144236	+	41	182683114	-	SPCG_0144	-	putative bacteriocin
145	 27.98	-2	144296..147211	+	971	182683115	-	SPCG_0145	-	lantibiotic biosynthesis protein
146	 30.91	-1	147195..148472	+	425	182683116	-	SPCG_0146	-	lantibiotic biosynthesis protein
147	 29.04	-2	148501..149757	+	418	182683117	-	SPCG_0147	-	lantibiotic efflux protein
148	 35.99	0	149836..150513	+	225	182683118	-	SPCG_0148	-	hypothetical protein
149	 38.29	0	150525..151190	+	221	182683119	-	SPCG_0149	-	hypothetical protein
150	 37.97	0	151259..152488	+	409	182683120	-	SPCG_0150	-	hypothetical protein
151	 46.18	+1	152943..153557	+	204	182683121	-	SPCG_0151	-	hypothetical protein
152	 40.67	0	153661..154491	+	276	182683122	-	SPCG_0152	-	ABC transporter, substrate-binding protein
153	 40.70	0	154645..155499	+	284	182683123	-	SPCG_0153	-	lipoprotein
154	 46.51	+1	155596..156969	+	457	182683124	-	SPCG_0154	-	hypothetical protein
155	 43.31	0	156962..158023	+	353	182683125	-	SPCG_0155	-	ABC transporter, ATP-binding protein
156	 45.74	+1	158025..158717	+	230	182683126	-	SPCG_0156	-	ABC transporter, permease protein, putative
157	 33.33	-1	158833..159606	+	257	182683127	-	SPCG_0157	-	transcriptional activator Rgg/GadR/MutR family protein
158	 33.33	-1	159788..159907	+	39	182683128	-	SPCG_0158	-	hypothetical protein
159	 40.32	0	159930..160244	+	104	182683129	-	SPCG_0159	-	hypothetical protein
160	 41.60	0	160260..160646	+	128	182683130	-	SPCG_0160	-	hypothetical protein
161	 40.04	0	160675..162060	+	461	182683131	-	SPCG_0161	-	hypothetical protein
162	 41.13	0	162238..163443	+	401	182683132	-	SPCG_0162	-	Tn916, transcriptional regulator, putative
163	 36.94	0	163486..163707	+	73	182683133	-	SPCG_0163	-	hypothetical protein
164	 40.36	0	163824..164321	+	165	182683134	-	SPCG_0164	-	hypothetical protein
165	 38.86	0	164296..164802	+	168	182683135	-	SPCG_0165	-	hypothetical protein
166	 40.78	0	164735..167233	+	832	182683136	-	SPCG_0166	-	hypothetical protein
167	 41.74	0	167236..169413	+	725	182683137	-	SPCG_0167	-	hypothetical protein
168	 42.71	0	169410..170411	+	333	182683138	-	SPCG_0168	-	hypothetical protein
169	 37.39	0	170408..171343	+	311	182683139	-	SPCG_0169	-	hypothetical protein
170	 33.33	-1	171618..171704	+	28	182683140	-	SPCG_0170	-	tet(M) leader peptide
171	 37.00	0	171705..173639	+	644	182683141	-	SPCG_0171	-	tetracycline resistance protein TetM
172	 32.93	-1	174564..175301	+	245	182683142	-	SPCG_0172	-	rRNA methylase
173	 34.41	-1	175656..176210	+	184	182683143	-	SPCG_0173	-	resolvase
174	 34.91	0	176214..179132	+	972	182683144	-	SPCG_0174	-	transposase
175	 38.33	0	179188..179427	-	79	182683145	-	SPCG_0175	-	hypothetical protein
176	 37.73	0	179923..180354	+	143	182683146	-	SPCG_0176	-	hypothetical protein
177	 37.23	0	180351..180581	+	76	182683147	-	SPCG_0177	-	hypothetical protein
178	 35.29	0	181042..181245	+	67	182683148	-	SPCG_0178	-	hypothetical protein
179	 37.19	0	181327..182544	+	405	182683149	-	SPCG_0179	-	hypothetical protein
180	 34.32	-1	182961..184277	+	438	182683150	-	SPCG_0180	-	hypothetical protein
181	 40.69	0	184315..184518	+	67	182683151	-	SPCG_0181	-	hypothetical protein
182	 44.34	+1	184713..185375	-	220	182683152	-	SPCG_0182	-	hypothetical protein
183	 38.66	0	185632..186213	+	193	182683153	-	SPCG_0183	-	hypothetical protein
184	 39.47	0	186159..186761	+	200	182683154	-	SPCG_0184	-	hypothetical protein
185	 43.81	0	187054..188361	-	435	182683155	-	SPCG_0185	-	hypothetical protein
186	 46.41	+1	188626..189084	-	152	182683156	-	SPCG_0186	-	hypothetical protein
187	 37.93	0	189081..189602	-	173	182683157	-	SPCG_0187	-	hypothetical protein
188	 46.10	+1	189877..191826	+	649	182683158	hexB	SPCG_0188	-	DNA mismatch repair protein
189	 35.68	0	192151..192618	-	155	182683159	ribE	SPCG_0189	-	riboflavin synthase, beta subunit
190	 35.36	0	192619..193854	-	411	182683160	ribA	SPCG_0190	-	3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II
191	 33.65	-1	193844..194479	-	211	182683161	ribC	SPCG_0191	-	riboflavin synthase subunit alpha
192	 36.24	0	194464..195564	-	366	182683162	ribD	SPCG_0192	-	riboflavin biosynthesis protein RibD
193	 43.94	0	195970..196563	+	197	182683163	ruvA	SPCG_0193	-	holliday junction DNA helicase motor protein
194	 46.95	+1	196219..196776	-	185	182683165	-	SPCG_0194	-	hypothetical protein
195	 46.63	+1	196573..197136	+	187	182683164	tag	SPCG_0195	-	DNA-3-methyladenine glycosylase I
196	 36.73	0	197133..197810	+	225	182683166	-	SPCG_0196	-	hypothetical protein
197	 41.96	0	197965..198996	-	343	182683167	-	SPCG_0197	-	mccC family protein
198	 38.54	0	199184..199279	-	31	182683168	-	SPCG_0198	-	hypothetical protein
199	 42.98	0	199251..199955	-	234	182683169	-	SPCG_0199	-	hypothetical protein
200	 41.90	0	199946..200890	-	314	182683170	-	SPCG_0200	-	magnesium transporter CorA family protein
201	 47.33	+1	200989..203853	+	954	182683171	uvrA	SPCG_0201	-	excinuclease ABC subunit A
202	 43.60	0	203846..204907	+	353	182683172	pepP	SPCG_0202	-	peptidase M24 family protein
203	 39.10	0	205039..205437	+	132	182683173	spxA	SPCG_0203	-	transcriptional regulator Spx
204	 38.07	0	205503..206072	+	189	182683174	-	SPCG_0204	-	hypothetical protein
205	 38.20	0	206159..206425	+	88	182683175	-	SPCG_0205	-	hypothetical protein
206	 41.67	0	206429..206848	+	139	182683176	-	SPCG_0206	-	hypothetical protein
207	 38.56	0	206864..207169	+	101	182683177	-	SPCG_0207	-	hypothetical protein
208	 43.75	0	207471..208727	+	418	182683178	folC	SPCG_0208	-	dihydrofolate synthetase, putative
209	 41.21	0	208724..209269	+	181	182683179	-	SPCG_0209	-	hypothetical protein
210	 38.42	0	209415..210947	+	510	182683180	cls	SPCG_0210	-	cardiolipin synthetase
211	 40.08	0	211187..212743	+	518	182683181	-	SPCG_0211	-	competence-induced protein Ccs4
212	 42.77	0	212857..215070	+	737	182683182	-	SPCG_0212	-	anaerobic ribonucleoside triphosphate reductase
213	 39.72	0	215082..215222	+	46	182683183	-	SPCG_0213	-	hypothetical protein
214	 43.79	0	215266..215772	+	168	182683184	-	SPCG_0214	-	acetyltransferase
215	 43.82	0	215765..216355	+	196	182683185	nrdD	SPCG_0215	-	anaerobic ribonucleoside-triphosphate reductase activating protein
216	 44.50	+1	216352..216969	+	205	182683186	-	SPCG_0216	-	hypothetical protein
217	 42.07	0	217236..217544	+	102	182683187	rpsJ	SPCG_0217	-	30S ribosomal protein S10
218	 43.06	0	217760..218386	+	208	182683188	rplC	SPCG_0218	-	50S ribosomal protein L3
219	 43.43	0	218411..219034	+	207	182683189	rplD	SPCG_0219	-	50S ribosomal protein L4
220	 36.36	0	219034..219330	+	98	182683190	rplW	SPCG_0220	-	50S ribosomal protein L23
221	 44.96	+1	219348..220181	+	277	182683191	rplB	SPCG_0221	-	50S ribosomal protein L2
222	 40.07	0	220273..220554	+	93	182683192	rpsS	SPCG_0222	-	30S ribosomal protein S19
223	 41.45	0	220566..220910	+	114	182683193	rplV	SPCG_0223	-	50S ribosomal protein L22
224	 42.97	0	220923..221576	+	217	182683194	rpsC	SPCG_0224	-	30S ribosomal protein S3
225	 44.20	0	221580..221993	+	137	182683195	rplP	SPCG_0225	-	50S ribosomal protein L16
226	 35.27	0	222003..222209	+	68	182683196	rpmC	SPCG_0226	-	50S ribosomal protein L29
227	 38.70	0	222234..222494	+	86	182683197	rpsQ	SPCG_0227	-	30S ribosomal protein S17
228	 43.90	0	222520..222888	+	122	182683198	rplN	SPCG_0228	-	50S ribosomal protein L14
229	 39.22	0	222966..223271	+	101	182683199	rplX	SPCG_0229	-	50S ribosomal protein L24
230	 40.88	0	223295..223837	+	180	182683200	rplE	SPCG_0230	-	50S ribosomal protein L5
231	 44.07	0	223855..224124	+	89	182683201	rpsN	SPCG_0231	-	ribosomal protein S14
232	 39.10	0	224338..224736	+	132	182683202	rpsH	SPCG_0232	-	30S ribosomal protein S8
233	 40.60	0	224928..225464	+	178	182683203	rplF	SPCG_0233	-	50S ribosomal protein L6
234	 44.70	+1	225509..225904	+	131	182683204	rplR	SPCG_0234	-	50S ribosomal protein L18
235	 43.03	0	225922..226416	+	164	182683205	rpsE	SPCG_0235	-	30S ribosomal protein S5
236	 36.89	0	226388..226612	+	74	182683206	rpmD	SPCG_0236	-	50S ribosomal protein L30
237	 41.50	0	226757..227197	+	146	182683207	rplO	SPCG_0237	-	50S ribosomal protein L15
238	 38.83	0	227210..228520	+	436	182683208	secY	SPCG_0238	-	preprotein translocase SecY
39.55	MEAN

4.71	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.