IslandPathversion 1.0

IslandPath Analysis: Streptococcus pneumoniae CGSP14



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.55 STD DEV: 4.71
Streptococcus pneumoniae CGSP14, complete genome - 1..2209198
2206 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1708	 45.94	+1	1681454..1682389	-	311	182684678	fmt	SPCG_1708	-	methionyl-tRNA formyltransferase
1709	 46.56	+1	1682402..1683376	-	324	182684679	-	SPCG_1709	-	primosome assembly protein PriA
1710	 46.57	+1	1683370..1684797	-	475	182684680	-	SPCG_1710	-	primosome assembly protein PriA
1711	 39.37	0	1684863..1685177	-	104	182684681	-	SPCG_1711	-	DNA-directed RNA polymerase omega subunit
1712	 44.34	+1	1685202..1685828	-	208	182684682	gmk	SPCG_1712	-	guanylate kinase
1713	 44.49	+1	1685958..1687571	-	537	182684683	-	SPCG_1713	-	hypothetical protein
1714	 38.04	0	1687762..1688016	-	84	182684684	-	SPCG_1714	-	hypothetical protein
1715	 39.12	0	1688020..1688313	-	97	182684685	-	SPCG_1715	-	hypothetical protein
1716	 45.26	+1	1688512..1689609	-	365	182684686	-	SPCG_1716	-	hypothetical protein
1717	 44.71	+1	1689619..1690374	-	251	182684687	-	SPCG_1717	-	hypothetical protein
1718	 45.20	+1	1690679..1691032	-	117	182684688	-	SPCG_1718	-	iojap-related protein
1719	 35.13	0	1691045..1691545	-	166	182684689	-	SPCG_1719	-	isochorismatase family protein
1720	 45.45	+1	1691546..1692139	-	197	182684690	-	SPCG_1720	-	hypothetical protein
1721	 47.14	+1	1692139..1692768	-	209	182684691	nadD	SPCG_1721	-	nicotinic acid mononucleotide adenyltransferase
1722	 38.46	0	1692820..1693131	-	103	182684692	-	SPCG_1722	-	hypothetical protein
1723	 44.53	+1	1693331..1694437	-	368	182684693	-	SPCG_1723	-	GTP-binding protein
1724	 43.32	0	1694440..1695030	-	196	182684694	-	SPCG_1724	-	hypothetical protein
1725	 41.80	0	1694982..1695890	-	302	182684695	corA	SPCG_1725	-	CorA family protein
1726	 38.78	0	1695947..1696552	-	201	182684696	-	SPCG_1726	-	mechanosensitive ion channel, putative
1727	 43.96	0	1696896..1697855	+	319	182684697	dctA	SPCG_1727	-	dicarboxylate/amino acid:cation (Na+ or H+) symporter
1728	 44.86	+1	1697923..1698876	+	317	182684698	-	SPCG_1728	-	hypothetical protein
1729	 41.25	0	1698893..1699132	-	79	182684699	-	SPCG_1729	-	hypothetical protein
1730	 36.66	0	1699243..1700535	+	430	182684700	-	SPCG_1730	-	IS1167, transposase
1731	 33.33	-1	1700578..1700802	-	74	182684701	-	SPCG_1731	-	hypothetical protein
1732	 37.78	0	1700807..1700986	-	59	182684702	-	SPCG_1732	-	hypothetical protein
1733	 41.55	0	1700988..1702325	-	445	182684703	-	SPCG_1733	-	hypothetical protein
1734	 38.56	0	1702318..1703829	-	503	182684704	-	SPCG_1734	-	glycosyl transferase, group 1
1735	 41.13	0	1703841..1706213	-	790	182684705	-	SPCG_1735	-	translocase
1736	 34.92	0	1706206..1706646	-	146	182684706	-	SPCG_1736	-	hypothetical protein
1737	 36.72	0	1706643..1708178	-	511	182684707	-	SPCG_1737	-	hypothetical protein
1738	 36.05	0	1708162..1709742	-	526	182684708	-	SPCG_1738	-	hypothetical protein
1739	 35.71	0	1709752..1710969	-	405	182684709	-	SPCG_1739	-	preprotein translocase SecY family protein
1740	 33.33	-1	1711026..1711703	-	225	182684710	-	SPCG_1740	-	glycosyl transferase family protein
1741	 33.83	-1	1711930..1713126	-	398	182684711	-	SPCG_1741	-	glycosyl transferase family protein
1742	 34.15	-1	1713135..1714355	-	406	182684712	-	SPCG_1742	-	glycosyl transferase family protein
1743	 34.64	-1	1714386..1716830	-	814	182684713	-	SPCG_1743	-	glycosyl transferase family protein
1744	 35.91	0	1716840..1717850	-	336	182684714	-	SPCG_1744	-	hypothetical protein
1745	 33.67	-1	1717890..1719095	-	401	182684715	-	SPCG_1745	-	glycosyl transferase family protein
1746	 33.68	-1	1719104..1719979	-	291	182684716	-	SPCG_1746	-	glycosyl transferase
1747	 29.78	-2	1720434..1721192	-	252	182684717	-	SPCG_1747	-	hypothetical protein
1748	 36.97	0	1721202..1722080	-	292	182684718	-	SPCG_1748	-	exopolysaccharide biosynthesis protein, acetyltransferase
1749	 35.29	0	1722077..1724167	-	696	182684719	-	SPCG_1749	-	glycosyl transferase family protein
1750	 53.91	+2	1724222..1738309	-	4695	182684720	-	SPCG_1750	-	cell wall surface anchor family protein
1751	 40.91	0	1738670..1739131	-	153	182684721	-	SPCG_1751	-	degenerate transposase
1752	 43.43	0	1739464..1739889	+	141	182684722	-	SPCG_1752	-	transcriptional regulator, putative
1753	 35.31	0	1739907..1740209	+	100	182684723	-	SPCG_1753	-	hypothetical protein
1754	 40.00	0	1740226..1740540	+	104	182684724	trxA	SPCG_1754	-	thioredoxin
1755	 45.90	+1	1740807..1741379	+	190	182684725	-	SPCG_1755	-	hypothetical protein
1756	 45.14	+1	1741634..1742302	-	222	182684726	aqpZ	SPCG_1756	-	aquaporin
1757	 37.34	0	1742413..1743210	-	265	182684727	-	SPCG_1757	-	hypothetical protein
1758	 45.69	+1	1743450..1745246	-	598	182684728	pepF	SPCG_1758	-	oligoendopeptidase F, putative
1759	 44.71	+1	1745257..1746012	-	251	182684729	-	SPCG_1759	-	hypothetical protein
1760	 47.95	+1	1746002..1746952	-	316	182684730	prmA	SPCG_1760	-	ribosomal protein L11 methyltransferase
1761	 29.12	-2	1746965..1747984	-	339	182684731	-	SPCG_1761	-	hypothetical protein
1762	 33.24	-1	1748035..1750278	-	747	182684732	-	SPCG_1762	-	subtilisin-like serine protease
1763	 32.37	-1	1750280..1751314	-	344	182684733	-	SPCG_1763	-	putative AAA+ ATPase
1764	 44.65	+1	1751424..1751582	-	52	182684734	-	SPCG_1764	-	mutT/nudix family protein
1765	 40.22	0	1751563..1752666	-	367	182684735	-	SPCG_1765	-	hypothetical protein
1766	 40.76	0	1752670..1753140	-	156	182684736	-	SPCG_1766	-	hypothetical protein
1767	 38.63	0	1753431..1753883	-	150	182684737	-	SPCG_1767	-	hypothetical protein
1768	 32.78	-1	1754236..1754415	-	59	182684738	-	SPCG_1768	-	hypothetical protein
1769	 29.52	-2	1754486..1754590	-	34	182684739	-	SPCG_1769	-	hypothetical protein
1770	 29.63	-2	1754580..1754822	-	80	182684740	-	SPCG_1770	-	hypothetical protein
1771	 47.80	+1	1755092..1756363	+	423	182684741	-	SPCG_1771	-	AAA family ATPase
1772	 40.35	0	1756908..1758233	-	441	182684742	sacA	SPCG_1772	-	sucrose-6-phosphate hydrolase, putative
1773	 36.89	0	1758237..1759949	-	570	182684743	-	SPCG_1773	-	ABC transporter, substrate-binding protein
1774	 36.06	0	1759882..1760799	-	305	182684744	-	SPCG_1774	-	ABC transporter, permease protein
1775	 36.30	0	1760783..1761727	-	314	182684745	-	SPCG_1775	-	ABC transporter, permease protein
1776	 33.24	-1	1761850..1762869	-	339	182684746	-	SPCG_1776	-	LacI family sugar-binding transcriptional regulator
1777	 29.69	-2	1763212..1764750	-	512	182684747	-	SPCG_1777	-	transcriptional activator, putative
1778	 43.64	0	1765136..1765300	+	54	182684748	-	SPCG_1778	-	hypothetical protein
1779	 31.41	-1	1765378..1765950	+	190	182684749	-	SPCG_1779	-	hypothetical protein
1780	 33.92	-1	1765962..1766132	+	56	182684750	-	SPCG_1780	-	hypothetical protein
1781	 36.45	0	1766171..1766779	+	202	182684751	-	SPCG_1781	-	general stress protein 24, putative
1782	 36.76	0	1766810..1767013	+	67	182684752	-	SPCG_1782	-	hypothetical protein
1783	 31.39	-1	1768163..1768933	-	256	182684753	-	SPCG_1783	-	hypothetical protein
1784	 39.34	0	1768948..1769796	-	282	182684754	-	SPCG_1784	-	hypothetical protein
1785	 35.84	0	1769793..1771268	-	491	182684755	-	SPCG_1785	-	phosphonate monoester hydrolase
1786	 36.36	0	1771591..1772946	-	451	182684756	-	SPCG_1786	-	phosphotransferase system (PTS) cellobiose-specific, IIC component, putative
1787	 39.94	0	1772956..1773273	-	105	182684757	-	SPCG_1787	-	phosphotransferase system (PTS) cellobiose-specific component IIA, putative
1788	 38.05	0	1773290..1773607	-	105	182684758	-	SPCG_1788	-	PTS system, IIB component
1789	 39.42	0	1773622..1774524	-	300	182684759	-	SPCG_1789	-	PEP phosphonomutase-like protein, putative
1790	 34.68	-1	1774521..1775783	-	420	182684760	-	SPCG_1790	-	phosphotransferase system cellobiose-specific component IIC
1791	 34.01	-1	1776063..1777241	+	392	182684761	-	SPCG_1791	-	ROK family protein, putative
1792	 37.58	0	1777469..1777915	-	148	182684762	-	SPCG_1792	-	acetyltransferase
1793	 34.07	-1	1777931..1778065	-	44	182684764	-	SPCG_1793	-	hypothetical protein
1794	 45.21	+1	1778039..1778644	+	201	182684763	pilD	SPCG_1794	-	type IV prepilin peptidase, putative
1795	 45.98	+1	1778616..1779461	-	281	182684765	trpA	SPCG_1795	-	tryptophan synthase subunit alpha
1796	 48.77	+1	1779385..1780608	-	407	182684766	trpB	SPCG_1796	-	tryptophan synthase subunit beta
1797	 44.44	+1	1780586..1781215	-	209	182684767	trpF	SPCG_1797	-	N-(5'-phosphoribosyl)anthranilate isomerase
1798	 46.61	+1	1781172..1781939	-	255	182684768	trpC	SPCG_1798	-	indole-3-glycerol-phosphate synthase
1799	 43.98	0	1781936..1782940	-	334	182684769	trpD	SPCG_1799	-	anthranilate phosphoribosyltransferase
1800	 42.68	0	1782951..1783517	-	188	182684770	trpG	SPCG_1800	-	anthranilate synthase component II
1801	 44.06	0	1783514..1784977	-	487	182684771	trpE	SPCG_1801	-	anthranilate synthase component I
1802	 45.16	+1	1785169..1785261	-	30	182684772	-	SPCG_1802	-	hypothetical protein
1803	 43.65	0	1785248..1785499	-	83	182684773	-	SPCG_1803	-	hypothetical protein
1804	 31.34	-1	1786107..1787108	-	333	182684774	-	SPCG_1804	-	LacI family sugar-binding transcriptional regulator
1805	 36.71	0	1787679..1788389	-	236	182684775	-	SPCG_1805	-	mgtC/SapB family protein
1806	 32.80	-1	1788392..1789903	-	503	182684776	-	SPCG_1806	-	ABC transporter, permease protein
1807	 33.14	-1	1790094..1791104	-	336	182684777	-	SPCG_1807	-	ABC transporter, ATP-binding protein
39.55	MEAN

4.71	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.