IslandPathversion 1.0

IslandPath Analysis: Streptococcus pneumoniae CGSP14



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.55 STD DEV: 4.71
Streptococcus pneumoniae CGSP14, complete genome - 1..2209198
2206 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1681	 43.10	0	1655753..1657063	-	436	182684651	serA	SPCG_1681	-	GTP-binding protein EngA
1682	 45.66	+1	1657077..1657790	-	237	182684652	-	SPCG_1682	-	nitroreductase family protein
1683	 43.48	0	1657787..1658683	-	298	182684653	dnaI	SPCG_1683	-	primosomal protein DnaI
1684	 41.20	0	1658684..1659853	-	389	182684654	-	SPCG_1684	-	hypothetical protein
1685	 41.20	0	1659854..1660387	-	177	182684655	-	SPCG_1685	-	hypothetical protein
1686	 41.80	0	1660467..1660832	+	121	182684656	-	SPCG_1686	-	GntR family transcriptional regulator
1687	 41.91	0	1660810..1661532	+	240	182684657	-	SPCG_1687	-	ABC transporter, ATP-binding protein
1688	 38.75	0	1661468..1662316	+	282	182684658	-	SPCG_1688	-	ABC transporter, ATP-binding protein
1689	 39.83	0	1662669..1663868	-	399	182684659	-	SPCG_1689	-	hypothetical protein
1690	 41.39	0	1663865..1664758	-	297	182684660	-	SPCG_1690	-	ABC transporter, ATP-binding protein
1691	 29.41	-2	1665149..1665250	-	33	182684661	-	SPCG_1691	-	hypothetical protein
1692	 46.12	+1	1666068..1666685	+	205	182684662	-	SPCG_1692	-	hypothetical protein
1693	 44.26	0	1666728..1667615	-	295	182684663	scrK	SPCG_1693	-	fructokinase
1694	 41.49	0	1667764..1669725	-	653	182684664	scrA	SPCG_1694	-	PTS system IIABC components
1695	 26.26	-2	1669827..1670024	-	65	182684665	-	SPCG_1695	-	hypothetical protein
1696	 42.34	0	1670077..1671531	+	484	182684666	scrB	SPCG_1696	-	sucrose-6-phosphate hydrolase
1697	 42.86	0	1671512..1672477	+	321	182684667	scrR	SPCG_1697	-	sucrose operon repressor
1698	 49.33	+2	1672512..1673786	-	424	182684668	mvaA	SPCG_1698	-	3-hydroxy-3-methylglutaryl-CoA reductase
1699	 42.02	0	1673786..1674982	-	398	182684669	mvaS	SPCG_1699	-	hydroxymethylglutaryl-CoA synthase
1700	 39.24	0	1675089..1675376	-	95	182684670	-	SPCG_1700	-	hypothetical protein
1701	 38.72	0	1675405..1675794	-	129	182684671	-	SPCG_1701	-	IS1381 transposase protein B
1702	 38.81	0	1675828..1676028	-	66	182684672	-	SPCG_1702	-	IS1381 transposase protein A, truncation
1703	 41.78	0	1676093..1676542	-	149	182684673	-	SPCG_1703	-	hypothetical protein
1704	 44.93	+1	1676544..1677302	-	252	182684674	-	SPCG_1704	-	hypothetical protein
1705	 44.04	0	1677417..1679396	-	659	182684675	pkn2	SPCG_1705	-	serine/threonine protein kinase
1706	 41.97	0	1679393..1680133	-	246	182684676	pppL	SPCG_1706	-	phosphatase, putative
1707	 44.12	0	1680148..1681464	-	438	182684677	sunL	SPCG_1707	-	rRNA methyltransferase RsmB
1708	 45.94	+1	1681454..1682389	-	311	182684678	fmt	SPCG_1708	-	methionyl-tRNA formyltransferase
1709	 46.56	+1	1682402..1683376	-	324	182684679	-	SPCG_1709	-	primosome assembly protein PriA
1710	 46.57	+1	1683370..1684797	-	475	182684680	-	SPCG_1710	-	primosome assembly protein PriA
1711	 39.37	0	1684863..1685177	-	104	182684681	-	SPCG_1711	-	DNA-directed RNA polymerase omega subunit
1712	 44.34	+1	1685202..1685828	-	208	182684682	gmk	SPCG_1712	-	guanylate kinase
1713	 44.49	+1	1685958..1687571	-	537	182684683	-	SPCG_1713	-	hypothetical protein
1714	 38.04	0	1687762..1688016	-	84	182684684	-	SPCG_1714	-	hypothetical protein
1715	 39.12	0	1688020..1688313	-	97	182684685	-	SPCG_1715	-	hypothetical protein
1716	 45.26	+1	1688512..1689609	-	365	182684686	-	SPCG_1716	-	hypothetical protein
1717	 44.71	+1	1689619..1690374	-	251	182684687	-	SPCG_1717	-	hypothetical protein
1718	 45.20	+1	1690679..1691032	-	117	182684688	-	SPCG_1718	-	iojap-related protein
1719	 35.13	0	1691045..1691545	-	166	182684689	-	SPCG_1719	-	isochorismatase family protein
1720	 45.45	+1	1691546..1692139	-	197	182684690	-	SPCG_1720	-	hypothetical protein
1721	 47.14	+1	1692139..1692768	-	209	182684691	nadD	SPCG_1721	-	nicotinic acid mononucleotide adenyltransferase
1722	 38.46	0	1692820..1693131	-	103	182684692	-	SPCG_1722	-	hypothetical protein
1723	 44.53	+1	1693331..1694437	-	368	182684693	-	SPCG_1723	-	GTP-binding protein
1724	 43.32	0	1694440..1695030	-	196	182684694	-	SPCG_1724	-	hypothetical protein
1725	 41.80	0	1694982..1695890	-	302	182684695	corA	SPCG_1725	-	CorA family protein
1726	 38.78	0	1695947..1696552	-	201	182684696	-	SPCG_1726	-	mechanosensitive ion channel, putative
1727	 43.96	0	1696896..1697855	+	319	182684697	dctA	SPCG_1727	-	dicarboxylate/amino acid:cation (Na+ or H+) symporter
1728	 44.86	+1	1697923..1698876	+	317	182684698	-	SPCG_1728	-	hypothetical protein
1729	 41.25	0	1698893..1699132	-	79	182684699	-	SPCG_1729	-	hypothetical protein
1730	 36.66	0	1699243..1700535	+	430	182684700	-	SPCG_1730	-	IS1167, transposase
1731	 33.33	-1	1700578..1700802	-	74	182684701	-	SPCG_1731	-	hypothetical protein
1732	 37.78	0	1700807..1700986	-	59	182684702	-	SPCG_1732	-	hypothetical protein
1733	 41.55	0	1700988..1702325	-	445	182684703	-	SPCG_1733	-	hypothetical protein
1734	 38.56	0	1702318..1703829	-	503	182684704	-	SPCG_1734	-	glycosyl transferase, group 1
1735	 41.13	0	1703841..1706213	-	790	182684705	-	SPCG_1735	-	translocase
1736	 34.92	0	1706206..1706646	-	146	182684706	-	SPCG_1736	-	hypothetical protein
1737	 36.72	0	1706643..1708178	-	511	182684707	-	SPCG_1737	-	hypothetical protein
1738	 36.05	0	1708162..1709742	-	526	182684708	-	SPCG_1738	-	hypothetical protein
1739	 35.71	0	1709752..1710969	-	405	182684709	-	SPCG_1739	-	preprotein translocase SecY family protein
1740	 33.33	-1	1711026..1711703	-	225	182684710	-	SPCG_1740	-	glycosyl transferase family protein
1741	 33.83	-1	1711930..1713126	-	398	182684711	-	SPCG_1741	-	glycosyl transferase family protein
1742	 34.15	-1	1713135..1714355	-	406	182684712	-	SPCG_1742	-	glycosyl transferase family protein
1743	 34.64	-1	1714386..1716830	-	814	182684713	-	SPCG_1743	-	glycosyl transferase family protein
1744	 35.91	0	1716840..1717850	-	336	182684714	-	SPCG_1744	-	hypothetical protein
1745	 33.67	-1	1717890..1719095	-	401	182684715	-	SPCG_1745	-	glycosyl transferase family protein
1746	 33.68	-1	1719104..1719979	-	291	182684716	-	SPCG_1746	-	glycosyl transferase
1747	 29.78	-2	1720434..1721192	-	252	182684717	-	SPCG_1747	-	hypothetical protein
1748	 36.97	0	1721202..1722080	-	292	182684718	-	SPCG_1748	-	exopolysaccharide biosynthesis protein, acetyltransferase
1749	 35.29	0	1722077..1724167	-	696	182684719	-	SPCG_1749	-	glycosyl transferase family protein
1750	 53.91	+2	1724222..1738309	-	4695	182684720	-	SPCG_1750	-	cell wall surface anchor family protein
1751	 40.91	0	1738670..1739131	-	153	182684721	-	SPCG_1751	-	degenerate transposase
1752	 43.43	0	1739464..1739889	+	141	182684722	-	SPCG_1752	-	transcriptional regulator, putative
1753	 35.31	0	1739907..1740209	+	100	182684723	-	SPCG_1753	-	hypothetical protein
1754	 40.00	0	1740226..1740540	+	104	182684724	trxA	SPCG_1754	-	thioredoxin
1755	 45.90	+1	1740807..1741379	+	190	182684725	-	SPCG_1755	-	hypothetical protein
1756	 45.14	+1	1741634..1742302	-	222	182684726	aqpZ	SPCG_1756	-	aquaporin
1757	 37.34	0	1742413..1743210	-	265	182684727	-	SPCG_1757	-	hypothetical protein
1758	 45.69	+1	1743450..1745246	-	598	182684728	pepF	SPCG_1758	-	oligoendopeptidase F, putative
1759	 44.71	+1	1745257..1746012	-	251	182684729	-	SPCG_1759	-	hypothetical protein
1760	 47.95	+1	1746002..1746952	-	316	182684730	prmA	SPCG_1760	-	ribosomal protein L11 methyltransferase
1761	 29.12	-2	1746965..1747984	-	339	182684731	-	SPCG_1761	-	hypothetical protein
1762	 33.24	-1	1748035..1750278	-	747	182684732	-	SPCG_1762	-	subtilisin-like serine protease
1763	 32.37	-1	1750280..1751314	-	344	182684733	-	SPCG_1763	-	putative AAA+ ATPase
1764	 44.65	+1	1751424..1751582	-	52	182684734	-	SPCG_1764	-	mutT/nudix family protein
1765	 40.22	0	1751563..1752666	-	367	182684735	-	SPCG_1765	-	hypothetical protein
1766	 40.76	0	1752670..1753140	-	156	182684736	-	SPCG_1766	-	hypothetical protein
1767	 38.63	0	1753431..1753883	-	150	182684737	-	SPCG_1767	-	hypothetical protein
1768	 32.78	-1	1754236..1754415	-	59	182684738	-	SPCG_1768	-	hypothetical protein
1769	 29.52	-2	1754486..1754590	-	34	182684739	-	SPCG_1769	-	hypothetical protein
1770	 29.63	-2	1754580..1754822	-	80	182684740	-	SPCG_1770	-	hypothetical protein
1771	 47.80	+1	1755092..1756363	+	423	182684741	-	SPCG_1771	-	AAA family ATPase
1772	 40.35	0	1756908..1758233	-	441	182684742	sacA	SPCG_1772	-	sucrose-6-phosphate hydrolase, putative
1773	 36.89	0	1758237..1759949	-	570	182684743	-	SPCG_1773	-	ABC transporter, substrate-binding protein
1774	 36.06	0	1759882..1760799	-	305	182684744	-	SPCG_1774	-	ABC transporter, permease protein
1775	 36.30	0	1760783..1761727	-	314	182684745	-	SPCG_1775	-	ABC transporter, permease protein
1776	 33.24	-1	1761850..1762869	-	339	182684746	-	SPCG_1776	-	LacI family sugar-binding transcriptional regulator
1777	 29.69	-2	1763212..1764750	-	512	182684747	-	SPCG_1777	-	transcriptional activator, putative
1778	 43.64	0	1765136..1765300	+	54	182684748	-	SPCG_1778	-	hypothetical protein
1779	 31.41	-1	1765378..1765950	+	190	182684749	-	SPCG_1779	-	hypothetical protein
1780	 33.92	-1	1765962..1766132	+	56	182684750	-	SPCG_1780	-	hypothetical protein
39.55	MEAN

4.71	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.