IslandPathversion 1.0

IslandPath Analysis: Streptococcus pneumoniae CGSP14



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.55 STD DEV: 4.71
Streptococcus pneumoniae CGSP14, complete genome - 1..2209198
2206 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1600	 37.56	0	1570738..1571352	-	204	182684570	cadD	SPCG_1600	-	cadmium resistance transporter, putative
1601	 41.85	0	1572168..1572437	-	89	182684571	-	SPCG_1601	-	30S ribosomal protein S15
1602	 36.19	0	1572452..1572556	-	34	182684572	-	SPCG_1602	-	hypothetical protein
1603	 36.35	0	1572578..1573207	-	209	182684573	-	SPCG_1603	-	hypothetical protein
1604	 33.33	-1	1573716..1573820	+	34	182684574	-	SPCG_1604	-	hypothetical protein
1605	 40.51	0	1574011..1574400	+	129	182684575	-	SPCG_1605	-	hypothetical protein
1606	 45.03	+1	1574419..1576401	+	660	182684576	thrS	SPCG_1606	-	threonyl-tRNA synthetase
1607	 41.03	0	1576450..1577424	-	324	182684577	-	SPCG_1607	-	sensor histidine kinase
1608	 41.93	0	1577417..1578184	-	255	182684578	-	SPCG_1608	-	DNA-binding response regulator
1609	 42.46	0	1578250..1579323	+	357	182684579	-	SPCG_1609	-	hypothetical protein
1610	 43.38	0	1579786..1580223	-	145	182684580	-	SPCG_1610	-	rrf2 family protein
1611	 46.53	+1	1580299..1581147	-	282	182684581	-	SPCG_1611	-	hypothetical protein
1612	 44.09	0	1581253..1581903	+	216	182684582	-	SPCG_1612	-	iron-dependent transcriptional regulator
1613	 36.67	0	1581975..1583231	-	418	182684583	-	SPCG_1613	-	IS1167, transposase
1614	 41.67	0	1583502..1584149	+	215	182684584	-	SPCG_1614	-	hypothetical protein
1615	 35.51	0	1584280..1584693	+	137	182684585	-	SPCG_1615	-	hypothetical protein
1616	 36.02	0	1584712..1584897	+	61	182684586	-	SPCG_1616	-	hypothetical protein
1617	 41.67	0	1585164..1585607	-	147	182684587	-	SPCG_1617	-	D-tyrosyl-tRNA deacylase
1618	 45.61	+1	1585637..1587859	-	740	182684588	relA	SPCG_1618	-	GTP pyrophosphokinase
1619	 46.99	+1	1588767..1589447	+	226	182684589	-	SPCG_1619	-	metallo-beta-lactamase superfamily protein
1620	 44.29	+1	1589570..1591522	-	650	182684590	pepO	SPCG_1620	-	endopeptidase O
1621	 42.46	0	1591720..1592475	+	251	182684591	-	SPCG_1621	-	manganese ABC transporter, ATP-binding protein
1622	 41.81	0	1592472..1593320	+	282	182684592	-	SPCG_1622	-	putative manganese ABC transporter permease
1623	 37.15	0	1593340..1594281	+	313	182684593	-	SPCG_1623	-	manganese ABC transporter, manganese-binding adhesion liprotein
1624	 42.77	0	1594377..1594895	+	172	182684594	tpx	SPCG_1624	-	thiol peroxidase
1625	 43.78	0	1594991..1597765	-	924	182684595	-	SPCG_1625	-	hypothetical protein
1626	 45.15	+1	1597701..1598411	-	236	182684596	-	SPCG_1626	-	ABC transporter, ATP-binding protein
1627	 42.99	0	1598652..1601063	-	803	182684597	-	SPCG_1627	-	hypothetical protein
1628	 41.85	0	1601116..1601808	-	230	182684598	gpmA	SPCG_1628	-	phosphoglyceromutase
1629	 28.87	-2	1601859..1602149	-	96	182684599	-	SPCG_1629	-	hypothetical protein
1630	 38.58	0	1602343..1602723	-	126	182684600	-	SPCG_1630	-	integral membrane protein
1631	 43.11	0	1603126..1605918	-	930	182684601	ileS	SPCG_1631	-	isoleucyl-tRNA synthetase
1632	 43.59	0	1606171..1606287	-	38	182684602	-	SPCG_1632	-	hypothetical protein
1633	 39.83	0	1606266..1607066	-	266	182684603	-	SPCG_1633	-	cell division protein DivIVA
1634	 35.24	0	1607063..1607848	-	261	182684604	divIVA	SPCG_1634	-	ylmH protein
1635	 42.42	0	1607845..1608108	-	87	182684605	-	SPCG_1635	-	ylmG protein
1636	 37.78	0	1608108..1608647	-	179	182684606	-	SPCG_1636	-	ylmF protein
1637	 38.69	0	1608657..1609328	-	223	182684607	-	SPCG_1637	-	ylmE protein
1638	 44.37	+1	1609333..1610592	-	419	182684608	-	SPCG_1638	-	cell division protein FtsZ
1639	 43.09	0	1610609..1611982	-	457	182684609	ftsZ	SPCG_1639	-	cell division protein FtsA
1640	 38.87	0	1612201..1612905	-	234	182684610	ftsA	SPCG_1640	-	hypothetical protein
1641	 40.85	0	1612996..1613607	-	203	182684611	-	SPCG_1641	-	mutT/nudix family protein
1642	 41.92	0	1613594..1614967	-	457	182684612	mutT	SPCG_1642	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase
1643	 44.73	+1	1615051..1616094	-	347	182684613	murF	SPCG_1643	-	D-alanylalanine synthetase
1644	 44.05	0	1616270..1616866	-	198	182684614	recR	SPCG_1644	-	recombination protein RecR
1645	 41.45	0	1616877..1618934	-	685	182684615	pbp2B	SPCG_1645	-	penicillin-binding protein 2B
1646	 42.25	0	1619128..1619979	+	283	182684616	-	SPCG_1646	-	phosphosugar-binding transcriptional regulator, putative
1647	 44.29	+1	1619995..1620879	-	294	182684617	-	SPCG_1647	-	ROK family protein
1648	 43.03	0	1620897..1621814	-	305	182684618	-	SPCG_1648	-	N-acetylneuraminate lyase, putative
1649	 40.93	0	1621983..1622627	-	214	182684619	-	SPCG_1649	-	hypothetical protein
1650	 34.34	-1	1622609..1622707	-	32	182684620	-	SPCG_1650	-	hypothetical protein
1651	 38.84	0	1622904..1623248	-	114	182684621	-	SPCG_1651	-	hypothetical protein
1652	 37.31	0	1623345..1623797	-	150	182684622	-	SPCG_1652	-	hypothetical protein
1653	 27.45	-2	1623821..1623973	-	50	182684623	-	SPCG_1653	-	hypothetical protein
1654	 42.02	0	1624069..1624908	-	279	182684624	-	SPCG_1654	-	sugar ABC transporter, permease protein
1655	 39.91	0	1624924..1625820	-	298	182684625	-	SPCG_1655	-	sugar ABC transporter, permease protein
1656	 40.56	0	1626042..1627370	-	442	182684626	-	SPCG_1656	-	sugar ABC transporter, sugar-binding protein
1657	 36.53	0	1627495..1629027	-	510	182684627	-	SPCG_1657	-	PTS system, IIBC components
1658	 43.49	0	1629031..1629729	-	232	182684628	nanE	SPCG_1658	-	N-acetylmannosamine-6-phosphate 2-epimerase
1659	 39.31	0	1629903..1631006	-	367	182684629	-	SPCG_1659	-	Gfo/Idh/MocA family oxidoreductase
1660	 33.19	-1	1631018..1633111	-	697	182684630	nanB	SPCG_1660	-	neuraminidase B
1661	 36.09	0	1633129..1633962	-	277	182684631	-	SPCG_1661	-	ABC transporter, permease protein
1662	 37.06	0	1633962..1634846	-	294	182684632	-	SPCG_1662	-	ABC transporter, permease protein
1663	 35.72	0	1634925..1636262	-	445	182684633	-	SPCG_1663	-	ABC transporter, substrate-binding protein
1664	 35.54	0	1636281..1636733	-	150	182684634	-	SPCG_1664	-	hypothetical protein
1665	 41.11	0	1637747..1640689	-	980	182684635	nanA	SPCG_1665	-	sialidase A precursor (neuraminidase A)
1666	 30.26	-1	1640932..1641159	-	75	182684636	-	SPCG_1666	-	hypothetical protein
1667	 43.89	0	1641433..1642095	-	220	182684637	-	SPCG_1667	-	hypothetical protein
1668	 45.06	+1	1642414..1643394	-	326	182684638	axe1	SPCG_1668	-	acetyl xylan esterase, putative
1669	 46.63	+1	1643951..1645966	-	671	182684639	recG	SPCG_1669	-	ATP-dependent DNA helicase RecG
1670	 46.13	+1	1645985..1647109	-	374	182684640	alr	SPCG_1670	-	alanine racemase
1671	 46.51	+1	1647078..1647449	-	123	182684641	acpS	SPCG_1671	-	4'-phosphopantetheinyl transferase
1672	 44.57	+1	1647485..1648516	-	343	182684642	aroF	SPCG_1672	-	3-deoxy-7-phosphoheptulonate synthase
1673	 41.28	0	1648518..1649549	-	343	182684643	aroG	SPCG_1673	-	3-deoxy-7-phosphoheptulonate synthase
1674	 43.24	0	1649630..1652143	-	837	182684644	secA	SPCG_1674	-	translocase
1675	 37.15	0	1652289..1652576	-	95	182684645	-	SPCG_1675	-	hypothetical protein
1676	 33.49	-1	1652587..1653237	-	216	182684646	-	SPCG_1676	-	ABC transporter, ATP-binding protein
1677	 32.31	-1	1653241..1653921	-	226	182684647	-	SPCG_1677	-	hypothetical protein
1678	 32.73	-1	1653875..1654705	-	276	182684648	-	SPCG_1678	-	hypothetical protein
1679	 33.92	-1	1654851..1655189	-	112	182684649	-	SPCG_1679	-	hypothetical protein
1680	 34.77	-1	1655327..1655674	-	115	182684650	-	SPCG_1680	-	hypothetical protein
1681	 43.10	0	1655753..1657063	-	436	182684651	serA	SPCG_1681	-	GTP-binding protein EngA
1682	 45.66	+1	1657077..1657790	-	237	182684652	-	SPCG_1682	-	nitroreductase family protein
1683	 43.48	0	1657787..1658683	-	298	182684653	dnaI	SPCG_1683	-	primosomal protein DnaI
1684	 41.20	0	1658684..1659853	-	389	182684654	-	SPCG_1684	-	hypothetical protein
1685	 41.20	0	1659854..1660387	-	177	182684655	-	SPCG_1685	-	hypothetical protein
1686	 41.80	0	1660467..1660832	+	121	182684656	-	SPCG_1686	-	GntR family transcriptional regulator
1687	 41.91	0	1660810..1661532	+	240	182684657	-	SPCG_1687	-	ABC transporter, ATP-binding protein
1688	 38.75	0	1661468..1662316	+	282	182684658	-	SPCG_1688	-	ABC transporter, ATP-binding protein
1689	 39.83	0	1662669..1663868	-	399	182684659	-	SPCG_1689	-	hypothetical protein
1690	 41.39	0	1663865..1664758	-	297	182684660	-	SPCG_1690	-	ABC transporter, ATP-binding protein
1691	 29.41	-2	1665149..1665250	-	33	182684661	-	SPCG_1691	-	hypothetical protein
1692	 46.12	+1	1666068..1666685	+	205	182684662	-	SPCG_1692	-	hypothetical protein
1693	 44.26	0	1666728..1667615	-	295	182684663	scrK	SPCG_1693	-	fructokinase
1694	 41.49	0	1667764..1669725	-	653	182684664	scrA	SPCG_1694	-	PTS system IIABC components
1695	 26.26	-2	1669827..1670024	-	65	182684665	-	SPCG_1695	-	hypothetical protein
1696	 42.34	0	1670077..1671531	+	484	182684666	scrB	SPCG_1696	-	sucrose-6-phosphate hydrolase
1697	 42.86	0	1671512..1672477	+	321	182684667	scrR	SPCG_1697	-	sucrose operon repressor
1698	 49.33	+2	1672512..1673786	-	424	182684668	mvaA	SPCG_1698	-	3-hydroxy-3-methylglutaryl-CoA reductase
1699	 42.02	0	1673786..1674982	-	398	182684669	mvaS	SPCG_1699	-	hydroxymethylglutaryl-CoA synthase
39.55	MEAN

4.71	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.