IslandPathversion 1.0

IslandPath Analysis: Streptococcus pneumoniae CGSP14



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.55 STD DEV: 4.71
Streptococcus pneumoniae CGSP14, complete genome - 1..2209198
2206 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1539	 42.36	0	1510284..1511468	+	394	182684509	-	SPCG_1539	-	cation efflux family protein
1540	 43.70	0	1511611..1513482	-	623	182684510	-	SPCG_1540	-	ABC transporter, ATP-binding protein
1541	 43.92	0	1513479..1514678	-	399	182684511	-	SPCG_1541	-	polyA polymerase family protein
1542	 45.44	+1	1514675..1515442	-	255	182684512	dapB	SPCG_1542	-	dihydrodipicolinate reductase
1543	 41.46	0	1515708..1516556	-	282	182684513	-	SPCG_1543	-	degV family protein
1544	 36.95	0	1516558..1516944	-	128	182684514	-	SPCG_1544	-	hypothetical protein
1545	 44.20	0	1517006..1518358	-	450	182684515	glmM	SPCG_1545	-	phosphoglucomutase/phosphomannomutase family protein
1546	 39.23	0	1518382..1519161	-	259	182684516	-	SPCG_1546	-	hypothetical protein
1547	 39.48	0	1519148..1520026	-	292	182684517	-	SPCG_1547	-	hypothetical protein
1548	 44.62	+1	1520141..1521106	+	321	182684518	-	SPCG_1548	-	pyridine nucleotide-disulphide oxidoreductase family protein
1549	 45.50	+1	1521140..1522051	-	303	182684519	-	SPCG_1549	-	hypothetical protein
1550	 45.30	+1	1522048..1523025	-	325	182684520	-	SPCG_1550	-	hypothetical protein
1551	 44.00	0	1523022..1523912	-	296	182684521	-	SPCG_1551	-	hypothetical protein
1552	 43.57	0	1523964..1524344	-	126	182684522	-	SPCG_1552	-	endoribonuclease L-PSP
1553	 45.29	+1	1524355..1524948	-	197	182684523	-	SPCG_1553	-	GTP-binding protein
1554	 43.07	0	1524951..1526183	-	410	182684524	clpX	SPCG_1554	-	ATP-dependent protease ATP-binding subunit
1555	 39.18	0	1526215..1526385	-	56	182684525	-	SPCG_1555	-	hypothetical protein
1556	 42.01	0	1526385..1526891	-	168	182684526	dfr	SPCG_1556	-	dihydrofolate reductase
1557	 41.62	0	1527021..1527539	-	172	182684527	-	SPCG_1557	-	non-heme iron-containing ferritin
1558	 37.63	0	1527752..1527844	+	30	182684528	-	SPCG_1558	-	hypothetical protein
1559	 39.31	0	1528037..1529542	-	501	182684529	lytC	SPCG_1559	-	lysozyme
1560	 42.31	0	1529580..1530359	-	259	182684530	tpiA	SPCG_1560	-	triosephosphate isomerase
1561	 43.22	0	1530436..1531113	-	225	182684531	-	SPCG_1561	-	hypothetical protein
1562	 41.38	0	1531122..1532066	-	314	182684532	metA	SPCG_1562	-	homoserine O-succinyltransferase
1563	 41.43	0	1532248..1532778	-	176	182684533	apt	SPCG_1563	-	adenine phosphoribosyltransferase
1564	 36.50	0	1532848..1533606	-	252	182684534	-	SPCG_1564	-	methyltransferase, putative
1565	 41.20	0	1534107..1535237	-	376	182684535	-	SPCG_1565	-	sugar ABC transporter, ATP-binding protein
1566	 39.93	0	1535687..1536262	-	191	182684536	entB	SPCG_1566	-	isochorismatase family protein
1567	 40.18	0	1536262..1537050	-	262	182684537	codY	SPCG_1567	-	transcriptional repressor CodY
1568	 43.37	0	1537315..1538889	-	524	182684538	-	SPCG_1568	-	ATP-dependent RNA helicase, putative
1569	 40.42	0	1539088..1540314	-	408	182684539	oxlT	SPCG_1569	-	oxalate:formate antiporter
1570	 41.76	0	1540507..1541823	+	438	182684540	merA	SPCG_1570	-	pyridine nucleotide-disulfide oxidoreductase
1571	 44.35	+1	1541922..1543265	+	447	182684541	-	SPCG_1571	-	mur ligase family protein
1572	 44.06	0	1543265..1544047	+	260	182684542	-	SPCG_1572	-	hypothetical protein
1573	 43.95	0	1544173..1545255	+	360	182684543	-	SPCG_1573	-	proline dipeptidase
1574	 36.21	0	1545579..1546412	-	277	182684544	-	SPCG_1574	-	IS3-Spn1, transposase
1575	 38.69	0	1546405..1546572	-	55	182684545	-	SPCG_1575	-	degenerate transposase
1576	 41.56	0	1547147..1547608	-	153	182684546	-	SPCG_1576	-	hypothetical protein
1577	 42.25	0	1547586..1548359	-	257	182684547	pdxK	SPCG_1577	-	phosphomethylpyrimidine kinase
1578	 43.73	0	1548349..1549098	-	249	182684548	truA	SPCG_1578	-	tRNA pseudouridine synthase A
1579	 30.25	-1	1549278..1549439	+	53	182684549	-	SPCG_1579	-	cytidylate kinase
1580	 43.06	0	1549411..1550562	-	383	182684550	-	SPCG_1580	-	hypothetical protein
1581	 38.25	0	1550802..1551431	-	209	182684551	-	SPCG_1581	-	hypothetical protein
1582	 41.59	0	1551434..1551772	-	112	182684552	phnA	SPCG_1582	-	phnA protein
1583	 42.26	0	1551903..1552574	-	223	182684553	cmk	SPCG_1583	-	cytidylate kinase
1584	 44.44	+1	1552583..1553059	-	158	182684554	-	SPCG_1584	-	hypothetical protein
1585	 41.06	0	1553111..1553317	+	68	182684555	-	SPCG_1585	-	ferredoxin
1586	 28.99	-2	1553507..1554151	-	214	182684556	-	SPCG_1586	-	hypothetical protein
1587	 42.22	0	1554326..1555315	-	329	182684557	gtrB	SPCG_1587	-	glycosyl transferase family protein
1588	 43.63	0	1555263..1556282	-	339	182684558	galE	SPCG_1588	-	UDP-glucose 4-epimerase
1589	 29.33	-2	1556261..1556410	-	49	182684559	-	SPCG_1589	-	hypothetical protein
1590	 46.00	+1	1556583..1557695	-	370	182684560	-	SPCG_1590	-	oxidoreductase, DadA family protein
1591	 44.61	+1	1557703..1558500	-	265	182684561	-	SPCG_1591	-	hypothetical protein
1592	 44.54	+1	1558487..1559164	-	225	182684562	-	SPCG_1592	-	bcl-2 family protein
1593	 35.24	0	1559522..1559626	+	34	182684563	-	SPCG_1593	-	hypothetical protein
1594	 29.76	-2	1559713..1560663	+	316	182684564	-	SPCG_1594	-	hypothetical protein
1595	 30.01	-2	1560771..1562216	+	481	182684565	-	SPCG_1595	-	hypothetical protein
1596	 36.72	0	1562218..1563456	+	412	182684566	-	SPCG_1596	-	hypothetical protein
1597	 39.47	0	1563645..1566791	+	1048	182684567	-	SPCG_1597	-	snf2 family protein
1598	 46.64	+1	1567228..1569564	-	778	182684568	ctpE	SPCG_1598	-	cation transporter E1-E2 family ATPase
1599	 42.26	0	1569652..1570446	+	264	182684569	-	SPCG_1599	-	acyltransferase family protein
1600	 37.56	0	1570738..1571352	-	204	182684570	cadD	SPCG_1600	-	cadmium resistance transporter, putative
1601	 41.85	0	1572168..1572437	-	89	182684571	-	SPCG_1601	-	30S ribosomal protein S15
1602	 36.19	0	1572452..1572556	-	34	182684572	-	SPCG_1602	-	hypothetical protein
1603	 36.35	0	1572578..1573207	-	209	182684573	-	SPCG_1603	-	hypothetical protein
1604	 33.33	-1	1573716..1573820	+	34	182684574	-	SPCG_1604	-	hypothetical protein
1605	 40.51	0	1574011..1574400	+	129	182684575	-	SPCG_1605	-	hypothetical protein
1606	 45.03	+1	1574419..1576401	+	660	182684576	thrS	SPCG_1606	-	threonyl-tRNA synthetase
1607	 41.03	0	1576450..1577424	-	324	182684577	-	SPCG_1607	-	sensor histidine kinase
1608	 41.93	0	1577417..1578184	-	255	182684578	-	SPCG_1608	-	DNA-binding response regulator
1609	 42.46	0	1578250..1579323	+	357	182684579	-	SPCG_1609	-	hypothetical protein
1610	 43.38	0	1579786..1580223	-	145	182684580	-	SPCG_1610	-	rrf2 family protein
1611	 46.53	+1	1580299..1581147	-	282	182684581	-	SPCG_1611	-	hypothetical protein
1612	 44.09	0	1581253..1581903	+	216	182684582	-	SPCG_1612	-	iron-dependent transcriptional regulator
1613	 36.67	0	1581975..1583231	-	418	182684583	-	SPCG_1613	-	IS1167, transposase
1614	 41.67	0	1583502..1584149	+	215	182684584	-	SPCG_1614	-	hypothetical protein
1615	 35.51	0	1584280..1584693	+	137	182684585	-	SPCG_1615	-	hypothetical protein
1616	 36.02	0	1584712..1584897	+	61	182684586	-	SPCG_1616	-	hypothetical protein
1617	 41.67	0	1585164..1585607	-	147	182684587	-	SPCG_1617	-	D-tyrosyl-tRNA deacylase
1618	 45.61	+1	1585637..1587859	-	740	182684588	relA	SPCG_1618	-	GTP pyrophosphokinase
1619	 46.99	+1	1588767..1589447	+	226	182684589	-	SPCG_1619	-	metallo-beta-lactamase superfamily protein
1620	 44.29	+1	1589570..1591522	-	650	182684590	pepO	SPCG_1620	-	endopeptidase O
1621	 42.46	0	1591720..1592475	+	251	182684591	-	SPCG_1621	-	manganese ABC transporter, ATP-binding protein
1622	 41.81	0	1592472..1593320	+	282	182684592	-	SPCG_1622	-	putative manganese ABC transporter permease
1623	 37.15	0	1593340..1594281	+	313	182684593	-	SPCG_1623	-	manganese ABC transporter, manganese-binding adhesion liprotein
1624	 42.77	0	1594377..1594895	+	172	182684594	tpx	SPCG_1624	-	thiol peroxidase
1625	 43.78	0	1594991..1597765	-	924	182684595	-	SPCG_1625	-	hypothetical protein
1626	 45.15	+1	1597701..1598411	-	236	182684596	-	SPCG_1626	-	ABC transporter, ATP-binding protein
1627	 42.99	0	1598652..1601063	-	803	182684597	-	SPCG_1627	-	hypothetical protein
1628	 41.85	0	1601116..1601808	-	230	182684598	gpmA	SPCG_1628	-	phosphoglyceromutase
1629	 28.87	-2	1601859..1602149	-	96	182684599	-	SPCG_1629	-	hypothetical protein
1630	 38.58	0	1602343..1602723	-	126	182684600	-	SPCG_1630	-	integral membrane protein
1631	 43.11	0	1603126..1605918	-	930	182684601	ileS	SPCG_1631	-	isoleucyl-tRNA synthetase
1632	 43.59	0	1606171..1606287	-	38	182684602	-	SPCG_1632	-	hypothetical protein
1633	 39.83	0	1606266..1607066	-	266	182684603	-	SPCG_1633	-	cell division protein DivIVA
1634	 35.24	0	1607063..1607848	-	261	182684604	divIVA	SPCG_1634	-	ylmH protein
1635	 42.42	0	1607845..1608108	-	87	182684605	-	SPCG_1635	-	ylmG protein
1636	 37.78	0	1608108..1608647	-	179	182684606	-	SPCG_1636	-	ylmF protein
1637	 38.69	0	1608657..1609328	-	223	182684607	-	SPCG_1637	-	ylmE protein
1638	 44.37	+1	1609333..1610592	-	419	182684608	-	SPCG_1638	-	cell division protein FtsZ
39.55	MEAN

4.71	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.