IslandPathversion 1.0

IslandPath Analysis: Streptococcus pneumoniae CGSP14



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.55 STD DEV: 4.71
Streptococcus pneumoniae CGSP14, complete genome - 1..2209198
2206 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
109	 40.55	0	109550..110020	+	156	182683079	-	SPCG_0109	-	argininosuccinate synthase, truncation
110	 38.00	0	110309..111208	-	299	182683080	-	SPCG_0110	-	hypothetical protein
111	 33.05	-1	111626..111976	+	116	182683081	-	SPCG_0111	-	transporter, truncation
112	 41.13	0	111954..112325	+	123	182683082	-	SPCG_0112	-	hypothetical protein
113	 38.89	0	112919..113044	+	41	182683083	-	SPCG_0113	-	hypothetical protein
114	 29.93	-2	113427..114485	+	352	182683084	-	SPCG_0114	-	hypothetical protein
115	 28.73	-2	114800..115777	+	325	182683085	-	SPCG_0115	-	hypothetical protein
116	 39.73	0	116135..116509	+	124	182683086	-	SPCG_0116	-	hypothetical protein
117	 29.68	-2	116717..117619	+	300	182683087	-	SPCG_0117	-	hypothetical protein
118	 36.89	0	117642..118007	+	121	182683088	-	SPCG_0118	-	hypothetical protein
119	 27.01	-2	117974..118732	+	252	182683089	-	SPCG_0119	-	hypothetical protein
120	 42.30	0	120255..122084	+	609	182683090	pspA	SPCG_0120	-	pneumococcal surface protein A
121	 47.70	+1	122431..123606	+	391	182683091	trmU	SPCG_0121	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
122	 43.89	0	123720..124202	+	160	182683092	-	SPCG_0122	-	mutT/nudix family protein
123	 47.13	+1	124212..126125	+	637	182683093	gidA	SPCG_0123	-	glucose-inhibited division protein A
124	 46.31	+1	126478..128157	-	559	182683094	-	SPCG_0124	-	metallo-beta-lactamase superfamily protein
125	 43.16	0	128159..128392	-	77	182683095	-	SPCG_0125	-	hypothetical protein
126	 35.19	0	128672..128779	+	35	182683096	-	SPCG_0126	-	hypothetical protein
127	 40.74	0	128802..128963	-	53	182683097	-	SPCG_0127	-	competence-induced protein Ccs1, truncated
128	 35.29	0	129210..129362	-	50	182683098	-	SPCG_0128	-	hypothetical protein
129	 37.63	0	129364..129549	-	61	182683099	-	SPCG_0129	-	hypothetical protein
130	 45.91	+1	129727..130410	+	227	182683100	-	SPCG_0130	-	hypothetical protein
131	 45.43	+1	130407..130844	+	145	182683101	rimI	SPCG_0131	-	ribosomal-protein-alanine acetyltransferase, putative
132	 49.26	+2	130834..131844	+	336	182683102	gcp	SPCG_0132	-	glycoprotease family protein
133	 38.76	0	131884..132270	-	128	182683103	-	SPCG_0133	-	degenerate transposase
134	 43.46	0	132477..133325	-	282	182683104	-	SPCG_0134	-	degenerate transposase
135	 27.48	-2	134450..135013	+	187	182683105	-	SPCG_0135	-	hypothetical protein
136	 32.90	-1	135141..135602	+	153	182683106	epsG	SPCG_0136	-	glycosyl transferase, putative
137	 27.46	-2	135626..136579	+	317	182683107	-	SPCG_0137	-	glycosyl transferase family protein
138	 30.24	-1	136589..138205	+	538	182683108	-	SPCG_0138	-	ABC transporter, ATP-binding protein
139	 27.18	-2	138129..139070	+	313	182683109	-	SPCG_0139	-	hypothetical protein
140	 26.32	-2	139099..140637	+	512	182683110	-	SPCG_0140	-	hypothetical protein
141	 30.95	-1	140643..141398	+	251	182683111	-	SPCG_0141	-	hypothetical protein
142	 29.24	-2	141411..142583	+	390	182683112	ugd	SPCG_0142	-	UDP-glucose dehydrogenase
143	 39.86	0	142954..143841	+	295	182683113	mutR	SPCG_0143	-	transcriptional regulator
144	 33.33	-1	144111..144236	+	41	182683114	-	SPCG_0144	-	putative bacteriocin
145	 27.98	-2	144296..147211	+	971	182683115	-	SPCG_0145	-	lantibiotic biosynthesis protein
146	 30.91	-1	147195..148472	+	425	182683116	-	SPCG_0146	-	lantibiotic biosynthesis protein
147	 29.04	-2	148501..149757	+	418	182683117	-	SPCG_0147	-	lantibiotic efflux protein
148	 35.99	0	149836..150513	+	225	182683118	-	SPCG_0148	-	hypothetical protein
149	 38.29	0	150525..151190	+	221	182683119	-	SPCG_0149	-	hypothetical protein
150	 37.97	0	151259..152488	+	409	182683120	-	SPCG_0150	-	hypothetical protein
151	 46.18	+1	152943..153557	+	204	182683121	-	SPCG_0151	-	hypothetical protein
152	 40.67	0	153661..154491	+	276	182683122	-	SPCG_0152	-	ABC transporter, substrate-binding protein
153	 40.70	0	154645..155499	+	284	182683123	-	SPCG_0153	-	lipoprotein
154	 46.51	+1	155596..156969	+	457	182683124	-	SPCG_0154	-	hypothetical protein
155	 43.31	0	156962..158023	+	353	182683125	-	SPCG_0155	-	ABC transporter, ATP-binding protein
156	 45.74	+1	158025..158717	+	230	182683126	-	SPCG_0156	-	ABC transporter, permease protein, putative
157	 33.33	-1	158833..159606	+	257	182683127	-	SPCG_0157	-	transcriptional activator Rgg/GadR/MutR family protein
158	 33.33	-1	159788..159907	+	39	182683128	-	SPCG_0158	-	hypothetical protein
159	 40.32	0	159930..160244	+	104	182683129	-	SPCG_0159	-	hypothetical protein
160	 41.60	0	160260..160646	+	128	182683130	-	SPCG_0160	-	hypothetical protein
161	 40.04	0	160675..162060	+	461	182683131	-	SPCG_0161	-	hypothetical protein
162	 41.13	0	162238..163443	+	401	182683132	-	SPCG_0162	-	Tn916, transcriptional regulator, putative
163	 36.94	0	163486..163707	+	73	182683133	-	SPCG_0163	-	hypothetical protein
164	 40.36	0	163824..164321	+	165	182683134	-	SPCG_0164	-	hypothetical protein
165	 38.86	0	164296..164802	+	168	182683135	-	SPCG_0165	-	hypothetical protein
166	 40.78	0	164735..167233	+	832	182683136	-	SPCG_0166	-	hypothetical protein
167	 41.74	0	167236..169413	+	725	182683137	-	SPCG_0167	-	hypothetical protein
168	 42.71	0	169410..170411	+	333	182683138	-	SPCG_0168	-	hypothetical protein
169	 37.39	0	170408..171343	+	311	182683139	-	SPCG_0169	-	hypothetical protein
170	 33.33	-1	171618..171704	+	28	182683140	-	SPCG_0170	-	tet(M) leader peptide
171	 37.00	0	171705..173639	+	644	182683141	-	SPCG_0171	-	tetracycline resistance protein TetM
172	 32.93	-1	174564..175301	+	245	182683142	-	SPCG_0172	-	rRNA methylase
173	 34.41	-1	175656..176210	+	184	182683143	-	SPCG_0173	-	resolvase
174	 34.91	0	176214..179132	+	972	182683144	-	SPCG_0174	-	transposase
175	 38.33	0	179188..179427	-	79	182683145	-	SPCG_0175	-	hypothetical protein
176	 37.73	0	179923..180354	+	143	182683146	-	SPCG_0176	-	hypothetical protein
177	 37.23	0	180351..180581	+	76	182683147	-	SPCG_0177	-	hypothetical protein
178	 35.29	0	181042..181245	+	67	182683148	-	SPCG_0178	-	hypothetical protein
179	 37.19	0	181327..182544	+	405	182683149	-	SPCG_0179	-	hypothetical protein
180	 34.32	-1	182961..184277	+	438	182683150	-	SPCG_0180	-	hypothetical protein
181	 40.69	0	184315..184518	+	67	182683151	-	SPCG_0181	-	hypothetical protein
182	 44.34	+1	184713..185375	-	220	182683152	-	SPCG_0182	-	hypothetical protein
183	 38.66	0	185632..186213	+	193	182683153	-	SPCG_0183	-	hypothetical protein
184	 39.47	0	186159..186761	+	200	182683154	-	SPCG_0184	-	hypothetical protein
185	 43.81	0	187054..188361	-	435	182683155	-	SPCG_0185	-	hypothetical protein
186	 46.41	+1	188626..189084	-	152	182683156	-	SPCG_0186	-	hypothetical protein
187	 37.93	0	189081..189602	-	173	182683157	-	SPCG_0187	-	hypothetical protein
188	 46.10	+1	189877..191826	+	649	182683158	hexB	SPCG_0188	-	DNA mismatch repair protein
189	 35.68	0	192151..192618	-	155	182683159	ribE	SPCG_0189	-	riboflavin synthase, beta subunit
190	 35.36	0	192619..193854	-	411	182683160	ribA	SPCG_0190	-	3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II
191	 33.65	-1	193844..194479	-	211	182683161	ribC	SPCG_0191	-	riboflavin synthase subunit alpha
192	 36.24	0	194464..195564	-	366	182683162	ribD	SPCG_0192	-	riboflavin biosynthesis protein RibD
193	 43.94	0	195970..196563	+	197	182683163	ruvA	SPCG_0193	-	holliday junction DNA helicase motor protein
194	 46.95	+1	196219..196776	-	185	182683165	-	SPCG_0194	-	hypothetical protein
195	 46.63	+1	196573..197136	+	187	182683164	tag	SPCG_0195	-	DNA-3-methyladenine glycosylase I
196	 36.73	0	197133..197810	+	225	182683166	-	SPCG_0196	-	hypothetical protein
197	 41.96	0	197965..198996	-	343	182683167	-	SPCG_0197	-	mccC family protein
198	 38.54	0	199184..199279	-	31	182683168	-	SPCG_0198	-	hypothetical protein
199	 42.98	0	199251..199955	-	234	182683169	-	SPCG_0199	-	hypothetical protein
200	 41.90	0	199946..200890	-	314	182683170	-	SPCG_0200	-	magnesium transporter CorA family protein
201	 47.33	+1	200989..203853	+	954	182683171	uvrA	SPCG_0201	-	excinuclease ABC subunit A
202	 43.60	0	203846..204907	+	353	182683172	pepP	SPCG_0202	-	peptidase M24 family protein
203	 39.10	0	205039..205437	+	132	182683173	spxA	SPCG_0203	-	transcriptional regulator Spx
204	 38.07	0	205503..206072	+	189	182683174	-	SPCG_0204	-	hypothetical protein
205	 38.20	0	206159..206425	+	88	182683175	-	SPCG_0205	-	hypothetical protein
206	 41.67	0	206429..206848	+	139	182683176	-	SPCG_0206	-	hypothetical protein
207	 38.56	0	206864..207169	+	101	182683177	-	SPCG_0207	-	hypothetical protein
208	 43.75	0	207471..208727	+	418	182683178	folC	SPCG_0208	-	dihydrofolate synthetase, putative
39.55	MEAN

4.71	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.