IslandPathversion 1.0

IslandPath Analysis: Streptococcus pneumoniae CGSP14



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.55 STD DEV: 4.71
Streptococcus pneumoniae CGSP14, complete genome - 1..2209198
2206 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1513	 33.15	-1	1485765..1486310	-	181	182684483	-	SPCG_1513	-	ABC-type multidrug transport system, ATPase and permease components
1514	 38.59	0	1486482..1488440	-	652	182684484	aliB	SPCG_1514	-	oligopeptide ABC transporter, oligopeptide-binding protein AliB
1515	 26.04	-2	1488427..1488522	-	31	182684485	-	SPCG_1515	-	hypothetical protein
1516	 44.02	0	1488643..1490280	-	545	182684486	-	SPCG_1516	-	polysaccharide biosynthesis protein, putative
1517	 42.95	0	1490371..1491816	+	481	182684487	murE	SPCG_1517	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
1518	 38.74	0	1492110..1492682	-	190	182684488	-	SPCG_1518	-	hypothetical protein
1519	 41.91	0	1492719..1493231	-	170	182684489	-	SPCG_1519	-	hypothetical protein
1520	 42.74	0	1493318..1494253	-	311	182684490	ppaC	SPCG_1520	-	putative manganese-dependent inorganic pyrophosphatase
1521	 42.67	0	1494324..1494623	-	99	182684491	-	SPCG_1521	-	hypothetical protein
1522	 42.00	0	1494613..1495362	-	249	182684492	-	SPCG_1522	-	hypothetical protein
1523	 42.64	0	1495416..1495802	-	128	182684493	-	SPCG_1523	-	hypothetical protein
1524	 41.54	0	1495777..1497177	-	466	182684494	-	SPCG_1524	-	cof family protein/peptidyl-prolyl cis-trans isomerase, cyclophilin type
1525	 41.67	0	1497472..1497711	-	79	182684495	rpsR	SPCG_1525	-	30S ribosomal protein S18
1526	 43.52	0	1497743..1498213	-	156	182684496	ssbA	SPCG_1526	-	single-strand DNA-binding protein
1527	 38.49	0	1498225..1498515	-	96	182684497	rpsF	SPCG_1527	-	30S ribosomal protein S6
1528	 43.97	0	1498669..1500012	-	447	182684498	asnS	SPCG_1528	-	asparaginyl-tRNA synthetase
1529	 39.78	0	1500031..1500402	-	123	182684499	-	SPCG_1529	-	hypothetical protein
1530	 46.72	+1	1500389..1501576	-	395	182684500	aspB	SPCG_1530	-	aspartate aminotransferase
1531	 39.26	0	1501573..1502061	-	162	182684501	-	SPCG_1531	-	hypothetical protein
1532	 42.86	0	1502301..1502930	+	209	182684502	-	SPCG_1532	-	hypothetical protein
1533	 42.39	0	1503208..1503936	-	242	182684503	-	SPCG_1533	-	hypothetical protein
1534	 38.79	0	1504030..1504194	-	54	182684504	-	SPCG_1534	-	hypothetical protein
1535	 42.48	0	1504347..1505942	-	531	182684505	-	SPCG_1535	-	hypothetical protein
1536	 45.26	+1	1505954..1506364	-	136	182684506	def	SPCG_1536	-	peptide deformylase
1537	 40.03	0	1506480..1507271	-	263	182684507	-	SPCG_1537	-	glutathione S-transferase family protein
1538	 44.30	+1	1507284..1510028	-	914	182684508	pacL	SPCG_1538	-	cation transporter E1-E2 family ATPase
1539	 42.36	0	1510284..1511468	+	394	182684509	-	SPCG_1539	-	cation efflux family protein
1540	 43.70	0	1511611..1513482	-	623	182684510	-	SPCG_1540	-	ABC transporter, ATP-binding protein
1541	 43.92	0	1513479..1514678	-	399	182684511	-	SPCG_1541	-	polyA polymerase family protein
1542	 45.44	+1	1514675..1515442	-	255	182684512	dapB	SPCG_1542	-	dihydrodipicolinate reductase
1543	 41.46	0	1515708..1516556	-	282	182684513	-	SPCG_1543	-	degV family protein
1544	 36.95	0	1516558..1516944	-	128	182684514	-	SPCG_1544	-	hypothetical protein
1545	 44.20	0	1517006..1518358	-	450	182684515	glmM	SPCG_1545	-	phosphoglucomutase/phosphomannomutase family protein
1546	 39.23	0	1518382..1519161	-	259	182684516	-	SPCG_1546	-	hypothetical protein
1547	 39.48	0	1519148..1520026	-	292	182684517	-	SPCG_1547	-	hypothetical protein
1548	 44.62	+1	1520141..1521106	+	321	182684518	-	SPCG_1548	-	pyridine nucleotide-disulphide oxidoreductase family protein
1549	 45.50	+1	1521140..1522051	-	303	182684519	-	SPCG_1549	-	hypothetical protein
1550	 45.30	+1	1522048..1523025	-	325	182684520	-	SPCG_1550	-	hypothetical protein
1551	 44.00	0	1523022..1523912	-	296	182684521	-	SPCG_1551	-	hypothetical protein
1552	 43.57	0	1523964..1524344	-	126	182684522	-	SPCG_1552	-	endoribonuclease L-PSP
1553	 45.29	+1	1524355..1524948	-	197	182684523	-	SPCG_1553	-	GTP-binding protein
1554	 43.07	0	1524951..1526183	-	410	182684524	clpX	SPCG_1554	-	ATP-dependent protease ATP-binding subunit
1555	 39.18	0	1526215..1526385	-	56	182684525	-	SPCG_1555	-	hypothetical protein
1556	 42.01	0	1526385..1526891	-	168	182684526	dfr	SPCG_1556	-	dihydrofolate reductase
1557	 41.62	0	1527021..1527539	-	172	182684527	-	SPCG_1557	-	non-heme iron-containing ferritin
1558	 37.63	0	1527752..1527844	+	30	182684528	-	SPCG_1558	-	hypothetical protein
1559	 39.31	0	1528037..1529542	-	501	182684529	lytC	SPCG_1559	-	lysozyme
1560	 42.31	0	1529580..1530359	-	259	182684530	tpiA	SPCG_1560	-	triosephosphate isomerase
1561	 43.22	0	1530436..1531113	-	225	182684531	-	SPCG_1561	-	hypothetical protein
1562	 41.38	0	1531122..1532066	-	314	182684532	metA	SPCG_1562	-	homoserine O-succinyltransferase
1563	 41.43	0	1532248..1532778	-	176	182684533	apt	SPCG_1563	-	adenine phosphoribosyltransferase
1564	 36.50	0	1532848..1533606	-	252	182684534	-	SPCG_1564	-	methyltransferase, putative
1565	 41.20	0	1534107..1535237	-	376	182684535	-	SPCG_1565	-	sugar ABC transporter, ATP-binding protein
1566	 39.93	0	1535687..1536262	-	191	182684536	entB	SPCG_1566	-	isochorismatase family protein
1567	 40.18	0	1536262..1537050	-	262	182684537	codY	SPCG_1567	-	transcriptional repressor CodY
1568	 43.37	0	1537315..1538889	-	524	182684538	-	SPCG_1568	-	ATP-dependent RNA helicase, putative
1569	 40.42	0	1539088..1540314	-	408	182684539	oxlT	SPCG_1569	-	oxalate:formate antiporter
1570	 41.76	0	1540507..1541823	+	438	182684540	merA	SPCG_1570	-	pyridine nucleotide-disulfide oxidoreductase
1571	 44.35	+1	1541922..1543265	+	447	182684541	-	SPCG_1571	-	mur ligase family protein
1572	 44.06	0	1543265..1544047	+	260	182684542	-	SPCG_1572	-	hypothetical protein
1573	 43.95	0	1544173..1545255	+	360	182684543	-	SPCG_1573	-	proline dipeptidase
1574	 36.21	0	1545579..1546412	-	277	182684544	-	SPCG_1574	-	IS3-Spn1, transposase
1575	 38.69	0	1546405..1546572	-	55	182684545	-	SPCG_1575	-	degenerate transposase
1576	 41.56	0	1547147..1547608	-	153	182684546	-	SPCG_1576	-	hypothetical protein
1577	 42.25	0	1547586..1548359	-	257	182684547	pdxK	SPCG_1577	-	phosphomethylpyrimidine kinase
1578	 43.73	0	1548349..1549098	-	249	182684548	truA	SPCG_1578	-	tRNA pseudouridine synthase A
1579	 30.25	-1	1549278..1549439	+	53	182684549	-	SPCG_1579	-	cytidylate kinase
1580	 43.06	0	1549411..1550562	-	383	182684550	-	SPCG_1580	-	hypothetical protein
1581	 38.25	0	1550802..1551431	-	209	182684551	-	SPCG_1581	-	hypothetical protein
1582	 41.59	0	1551434..1551772	-	112	182684552	phnA	SPCG_1582	-	phnA protein
1583	 42.26	0	1551903..1552574	-	223	182684553	cmk	SPCG_1583	-	cytidylate kinase
1584	 44.44	+1	1552583..1553059	-	158	182684554	-	SPCG_1584	-	hypothetical protein
1585	 41.06	0	1553111..1553317	+	68	182684555	-	SPCG_1585	-	ferredoxin
1586	 28.99	-2	1553507..1554151	-	214	182684556	-	SPCG_1586	-	hypothetical protein
1587	 42.22	0	1554326..1555315	-	329	182684557	gtrB	SPCG_1587	-	glycosyl transferase family protein
1588	 43.63	0	1555263..1556282	-	339	182684558	galE	SPCG_1588	-	UDP-glucose 4-epimerase
1589	 29.33	-2	1556261..1556410	-	49	182684559	-	SPCG_1589	-	hypothetical protein
1590	 46.00	+1	1556583..1557695	-	370	182684560	-	SPCG_1590	-	oxidoreductase, DadA family protein
1591	 44.61	+1	1557703..1558500	-	265	182684561	-	SPCG_1591	-	hypothetical protein
1592	 44.54	+1	1558487..1559164	-	225	182684562	-	SPCG_1592	-	bcl-2 family protein
1593	 35.24	0	1559522..1559626	+	34	182684563	-	SPCG_1593	-	hypothetical protein
1594	 29.76	-2	1559713..1560663	+	316	182684564	-	SPCG_1594	-	hypothetical protein
1595	 30.01	-2	1560771..1562216	+	481	182684565	-	SPCG_1595	-	hypothetical protein
1596	 36.72	0	1562218..1563456	+	412	182684566	-	SPCG_1596	-	hypothetical protein
1597	 39.47	0	1563645..1566791	+	1048	182684567	-	SPCG_1597	-	snf2 family protein
1598	 46.64	+1	1567228..1569564	-	778	182684568	ctpE	SPCG_1598	-	cation transporter E1-E2 family ATPase
1599	 42.26	0	1569652..1570446	+	264	182684569	-	SPCG_1599	-	acyltransferase family protein
1600	 37.56	0	1570738..1571352	-	204	182684570	cadD	SPCG_1600	-	cadmium resistance transporter, putative
1601	 41.85	0	1572168..1572437	-	89	182684571	-	SPCG_1601	-	30S ribosomal protein S15
1602	 36.19	0	1572452..1572556	-	34	182684572	-	SPCG_1602	-	hypothetical protein
1603	 36.35	0	1572578..1573207	-	209	182684573	-	SPCG_1603	-	hypothetical protein
1604	 33.33	-1	1573716..1573820	+	34	182684574	-	SPCG_1604	-	hypothetical protein
1605	 40.51	0	1574011..1574400	+	129	182684575	-	SPCG_1605	-	hypothetical protein
1606	 45.03	+1	1574419..1576401	+	660	182684576	thrS	SPCG_1606	-	threonyl-tRNA synthetase
1607	 41.03	0	1576450..1577424	-	324	182684577	-	SPCG_1607	-	sensor histidine kinase
1608	 41.93	0	1577417..1578184	-	255	182684578	-	SPCG_1608	-	DNA-binding response regulator
1609	 42.46	0	1578250..1579323	+	357	182684579	-	SPCG_1609	-	hypothetical protein
1610	 43.38	0	1579786..1580223	-	145	182684580	-	SPCG_1610	-	rrf2 family protein
1611	 46.53	+1	1580299..1581147	-	282	182684581	-	SPCG_1611	-	hypothetical protein
1612	 44.09	0	1581253..1581903	+	216	182684582	-	SPCG_1612	-	iron-dependent transcriptional regulator
39.55	MEAN

4.71	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.