IslandPathversion 1.0

IslandPath Analysis: Streptococcus pneumoniae CGSP14



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.55 STD DEV: 4.71
Streptococcus pneumoniae CGSP14, complete genome - 1..2209198
2206 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1452	 39.74	0	1426599..1427051	+	150	182684422	-	SPCG_1452	-	hypothetical protein
1453	 40.59	0	1427048..1427695	+	215	182684423	-	SPCG_1453	-	hemolysin
1454	 28.47	-2	1428047..1429363	-	438	182684424	-	SPCG_1454	-	hypothetical protein
1455	 33.21	-1	1429381..1430181	-	266	182684425	-	SPCG_1455	-	ABC transporter, ATP-binding protein
1456	 42.22	0	1430669..1431253	-	194	182684426	-	SPCG_1456	-	hypothetical protein
1457	 44.41	+1	1431254..1432147	-	297	182684427	pdx1	SPCG_1457	-	pyridoxine biosynthesis protein
1458	 40.80	0	1432281..1433660	-	459	182684428	nox	SPCG_1458	-	NADH oxidase
1459	 43.72	0	1433954..1434877	+	307	182684429	apbE	SPCG_1459	-	thiamine biosynthesis protein ApbE, putative
1460	 38.61	0	1434937..1435542	+	201	182684430	-	SPCG_1460	-	oxidoreductase, putative
1461	 42.33	0	1435561..1436805	+	414	182684431	-	SPCG_1461	-	oxidoreductase, putative
1462	 39.92	0	1437028..1437285	-	85	182684432	-	SPCG_1462	-	hypothetical protein
1463	 41.73	0	1437327..1439363	-	678	182684433	glyS	SPCG_1463	-	glycyl-tRNA synthetase beta subunit
1464	 44.23	0	1439649..1440566	-	305	182684434	glyQ	SPCG_1464	-	glycyl-tRNA synthetase alpha subunit
1465	 34.23	-1	1440758..1441537	-	259	182684435	-	SPCG_1465	-	hypothetical protein
1466	 42.59	0	1441792..1442634	-	280	182684436	-	SPCG_1466	-	aldo/keto reductase family oxidoreductase
1467	 38.32	0	1442748..1444190	-	480	182684437	pgdA	SPCG_1467	-	peptidoglycan N-acetylglucosamine deacetylase A
1468	 39.95	0	1444374..1444751	-	125	182684438	-	SPCG_1468	-	hypothetical protein
1469	 41.00	0	1444771..1445853	+	360	182684439	mocA	SPCG_1469	-	Gfo/Idh/MocA family oxidoreductase
1470	 40.90	0	1445850..1446932	+	360	182684440	-	SPCG_1470	-	DEAD-box ATP dependent DNA helicase
1471	 36.70	0	1446996..1447262	-	88	182684441	-	SPCG_1471	-	hypothetical protein
1472	 37.96	0	1447527..1447634	-	35	182684442	-	SPCG_1472	-	hypothetical protein
1473	 31.82	-1	1447886..1448017	-	43	182684443	-	SPCG_1473	-	hypothetical protein
1474	 44.12	0	1448401..1449615	-	404	182684444	tuf	SPCG_1474	-	elongation factor Tu
1475	 43.91	0	1450530..1451399	-	289	182684445	glpF	SPCG_1475	-	glycerol uptake facilitator protein, putative
1476	 41.36	0	1451622..1451783	-	53	182684446	-	SPCG_1476	-	cell wall surface anchor family protein
1477	 37.83	0	1452100..1453212	-	370	182684447	-	SPCG_1477	-	hypothetical protein
1478	 32.29	-1	1453850..1453945	-	31	182684448	-	SPCG_1478	-	hypothetical protein
1479	 37.33	0	1453911..1454210	-	99	182684449	-	SPCG_1479	-	transposase, IS630-Spn1 related, Orf2
1480	 39.81	0	1454430..1454645	-	71	182684450	-	SPCG_1480	-	hypothetical protein
1481	 43.34	0	1454989..1456707	+	572	182684451	pgm	SPCG_1481	-	phosphoglucomutase
1482	 37.50	0	1456757..1457284	-	175	182684452	-	SPCG_1482	-	degenerate transposase
1483	 38.34	0	1457565..1458083	-	172	182684453	-	SPCG_1483	-	degenerate transposase
1484	 40.23	0	1458310..1458657	+	115	182684454	bta	SPCG_1484	-	bacterocin transport accessory protein
1485	 37.28	0	1458937..1459773	-	278	182684455	-	SPCG_1485	-	amino acid ABC transporter, amino acid-binding protein
1486	 42.22	0	1459786..1460415	-	209	182684456	-	SPCG_1486	-	amino acid ABC transporter, ATP-binding protein
1487	 40.49	0	1460425..1461123	-	232	182684457	-	SPCG_1487	-	amino acid ABC transporter, permease protein
1488	 40.96	0	1461212..1462456	-	414	182684458	-	SPCG_1488	-	TPR domain-containing protein
1489	 38.22	0	1462431..1463597	-	388	182684459	-	SPCG_1489	-	membrane protein
1490	 42.60	0	1463741..1464754	+	337	182684460	-	SPCG_1490	-	hypothetical protein
1491	 43.10	0	1464799..1465218	-	139	182684461	atpC	SPCG_1491	-	ATP synthase subunit epsilon
1492	 44.78	+1	1465229..1466635	-	468	182684462	atpD	SPCG_1492	-	ATP synthase subunit B
1493	 41.64	0	1466721..1467599	-	292	182684463	atpG	SPCG_1493	-	ATP synthase subunit C
1494	 44.42	+1	1467615..1469120	-	501	182684464	atpA	SPCG_1494	-	ATP synthase subunit A
1495	 35.01	0	1469135..1469671	-	178	182684465	atpH	SPCG_1495	-	ATP synthase subunit D
1496	 36.77	0	1469671..1470165	-	164	182684466	atpF	SPCG_1496	-	ATP synthase subunit B
1497	 35.98	0	1470179..1470895	-	238	182684467	atpB	SPCG_1497	-	ATP synthase subunit A
1498	 34.33	-1	1470930..1471130	-	66	182684468	atpE	SPCG_1498	-	ATP synthase F0, C subunit
1499	 39.79	0	1471205..1472257	-	350	182684469	-	SPCG_1499	-	IS1239 transposase
1500	 34.99	0	1472670..1473152	-	160	182684470	-	SPCG_1500	-	acetyltransferase
1501	 39.23	0	1473186..1473728	-	180	182684471	-	SPCG_1501	-	hypothetical protein
1502	 41.67	0	1473756..1474247	-	163	182684472	greA	SPCG_1502	-	transcription elongation factor GreA
1503	 41.12	0	1474309..1475964	-	551	182684473	-	SPCG_1503	-	hypothetical protein
1504	 41.21	0	1476045..1476539	-	164	182684474	-	SPCG_1504	-	acetyltransferase
1505	 41.08	0	1476536..1477000	-	154	182684475	-	SPCG_1505	-	acetyltransferase
1506	 41.65	0	1477010..1478344	-	444	182684476	murC	SPCG_1506	-	UDP-N-acetylmuramate--L-alanine ligase
1507	 40.29	0	1478355..1478972	-	205	182684477	-	SPCG_1507	-	hypothetical protein
1508	 44.08	0	1479020..1482118	-	1032	182684478	snf	SPCG_1508	-	snf2 family protein
1509	 41.82	0	1482211..1483377	-	388	182684479	patB	SPCG_1509	-	aminotransferase, class II
1510	 44.57	+1	1483385..1484479	-	364	182684480	metB	SPCG_1510	-	cystathionine gamma-synthase
1511	 38.89	0	1484636..1485229	-	197	182684481	-	SPCG_1511	-	hypothetical protein
1512	 36.11	0	1485217..1485756	-	179	182684482	-	SPCG_1512	-	hypothetical protein
1513	 33.15	-1	1485765..1486310	-	181	182684483	-	SPCG_1513	-	ABC-type multidrug transport system, ATPase and permease components
1514	 38.59	0	1486482..1488440	-	652	182684484	aliB	SPCG_1514	-	oligopeptide ABC transporter, oligopeptide-binding protein AliB
1515	 26.04	-2	1488427..1488522	-	31	182684485	-	SPCG_1515	-	hypothetical protein
1516	 44.02	0	1488643..1490280	-	545	182684486	-	SPCG_1516	-	polysaccharide biosynthesis protein, putative
1517	 42.95	0	1490371..1491816	+	481	182684487	murE	SPCG_1517	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
1518	 38.74	0	1492110..1492682	-	190	182684488	-	SPCG_1518	-	hypothetical protein
1519	 41.91	0	1492719..1493231	-	170	182684489	-	SPCG_1519	-	hypothetical protein
1520	 42.74	0	1493318..1494253	-	311	182684490	ppaC	SPCG_1520	-	putative manganese-dependent inorganic pyrophosphatase
1521	 42.67	0	1494324..1494623	-	99	182684491	-	SPCG_1521	-	hypothetical protein
1522	 42.00	0	1494613..1495362	-	249	182684492	-	SPCG_1522	-	hypothetical protein
1523	 42.64	0	1495416..1495802	-	128	182684493	-	SPCG_1523	-	hypothetical protein
1524	 41.54	0	1495777..1497177	-	466	182684494	-	SPCG_1524	-	cof family protein/peptidyl-prolyl cis-trans isomerase, cyclophilin type
1525	 41.67	0	1497472..1497711	-	79	182684495	rpsR	SPCG_1525	-	30S ribosomal protein S18
1526	 43.52	0	1497743..1498213	-	156	182684496	ssbA	SPCG_1526	-	single-strand DNA-binding protein
1527	 38.49	0	1498225..1498515	-	96	182684497	rpsF	SPCG_1527	-	30S ribosomal protein S6
1528	 43.97	0	1498669..1500012	-	447	182684498	asnS	SPCG_1528	-	asparaginyl-tRNA synthetase
1529	 39.78	0	1500031..1500402	-	123	182684499	-	SPCG_1529	-	hypothetical protein
1530	 46.72	+1	1500389..1501576	-	395	182684500	aspB	SPCG_1530	-	aspartate aminotransferase
1531	 39.26	0	1501573..1502061	-	162	182684501	-	SPCG_1531	-	hypothetical protein
1532	 42.86	0	1502301..1502930	+	209	182684502	-	SPCG_1532	-	hypothetical protein
1533	 42.39	0	1503208..1503936	-	242	182684503	-	SPCG_1533	-	hypothetical protein
1534	 38.79	0	1504030..1504194	-	54	182684504	-	SPCG_1534	-	hypothetical protein
1535	 42.48	0	1504347..1505942	-	531	182684505	-	SPCG_1535	-	hypothetical protein
1536	 45.26	+1	1505954..1506364	-	136	182684506	def	SPCG_1536	-	peptide deformylase
1537	 40.03	0	1506480..1507271	-	263	182684507	-	SPCG_1537	-	glutathione S-transferase family protein
1538	 44.30	+1	1507284..1510028	-	914	182684508	pacL	SPCG_1538	-	cation transporter E1-E2 family ATPase
1539	 42.36	0	1510284..1511468	+	394	182684509	-	SPCG_1539	-	cation efflux family protein
1540	 43.70	0	1511611..1513482	-	623	182684510	-	SPCG_1540	-	ABC transporter, ATP-binding protein
1541	 43.92	0	1513479..1514678	-	399	182684511	-	SPCG_1541	-	polyA polymerase family protein
1542	 45.44	+1	1514675..1515442	-	255	182684512	dapB	SPCG_1542	-	dihydrodipicolinate reductase
1543	 41.46	0	1515708..1516556	-	282	182684513	-	SPCG_1543	-	degV family protein
1544	 36.95	0	1516558..1516944	-	128	182684514	-	SPCG_1544	-	hypothetical protein
1545	 44.20	0	1517006..1518358	-	450	182684515	glmM	SPCG_1545	-	phosphoglucomutase/phosphomannomutase family protein
1546	 39.23	0	1518382..1519161	-	259	182684516	-	SPCG_1546	-	hypothetical protein
1547	 39.48	0	1519148..1520026	-	292	182684517	-	SPCG_1547	-	hypothetical protein
1548	 44.62	+1	1520141..1521106	+	321	182684518	-	SPCG_1548	-	pyridine nucleotide-disulphide oxidoreductase family protein
1549	 45.50	+1	1521140..1522051	-	303	182684519	-	SPCG_1549	-	hypothetical protein
1550	 45.30	+1	1522048..1523025	-	325	182684520	-	SPCG_1550	-	hypothetical protein
1551	 44.00	0	1523022..1523912	-	296	182684521	-	SPCG_1551	-	hypothetical protein
39.55	MEAN

4.71	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.