IslandPathversion 1.0

IslandPath Analysis: Streptococcus pneumoniae CGSP14



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.55 STD DEV: 4.71
Streptococcus pneumoniae CGSP14, complete genome - 1..2209198
2206 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1357	 36.04	0	1343540..1343650	-	36	182684327	-	SPCG_1357	-	hypothetical protein
1358	 41.33	0	1343768..1345042	-	424	182684328	-	SPCG_1358	-	psr protein
1359	 42.29	0	1345039..1345887	-	282	182684329	pheA	SPCG_1359	-	prephenate dehydratase
1360	 41.93	0	1345884..1346360	-	158	182684330	aroK	SPCG_1360	-	shikimate kinase
1361	 44.91	+1	1346353..1347648	-	431	182684331	aroA	SPCG_1361	-	3-phosphoshikimate 1-carboxyvinyltransferase
1362	 39.23	0	1347728..1348066	-	112	182684332	-	SPCG_1362	-	hypothetical protein
1363	 44.20	0	1348077..1349180	-	367	182684333	tyrA	SPCG_1363	-	prephenate dehydrogenase
1364	 46.87	+1	1349190..1350356	-	388	182684334	aroC	SPCG_1364	-	chorismate synthase
1365	 44.76	+1	1350366..1351433	-	355	182684335	aroB	SPCG_1365	-	3-dehydroquinate synthase
1366	 43.63	0	1351452..1352306	-	284	182684336	aroE	SPCG_1366	-	shikimate/quinate 5-dehydrogenase
1367	 44.10	0	1352296..1352973	-	225	182684337	aroD	SPCG_1367	-	3-dehydroquinate dehydratase
1368	 41.26	0	1352970..1354142	-	390	182684338	-	SPCG_1368	-	hypothetical protein
1369	 39.95	0	1354820..1356481	-	553	182684339	-	SPCG_1369	-	hypothetical protein
1370	 42.40	0	1356435..1357250	-	271	182684340	-	SPCG_1370	-	ABC transporter, ATP-binding protein
1371	 45.70	+1	1357363..1358817	+	484	182684341	amy	SPCG_1371	-	cytoplasmic alpha-amylase
1372	 44.33	+1	1358907..1361525	-	872	182684342	alaS	SPCG_1372	-	alanyl-tRNA synthetase
1373	 40.96	0	1361547..1362044	-	165	182684343	-	SPCG_1373	-	hypothetical protein
1374	 41.74	0	1362698..1363768	-	356	182684344	-	SPCG_1374	-	spermidine/putrescine ABC transporter, spermidine/putrescine-binding protein
1375	 43.07	0	1363765..1364565	-	266	182684345	-	SPCG_1375	-	spermidine/putrescine ABC transporter, permease protein
1376	 43.72	0	1364535..1365362	-	275	182684346	-	SPCG_1376	-	spermidine/putrescine ABC transporter, permease protein
1377	 44.73	+1	1365322..1366479	-	385	182684347	-	SPCG_1377	-	spermidine/putrescine ABC transporter, ATP-binding protein
1378	 45.03	+1	1366639..1367544	-	301	182684348	murB	SPCG_1378	-	UDP-N-acetylenolpyruvoylglucosamine reductase
1379	 33.33	-1	1367596..1367694	+	32	182684349	-	SPCG_1379	-	hypothetical protein
1380	 42.90	0	1367658..1368410	-	250	182684350	-	SPCG_1380	-	hypothetical protein
1381	 45.36	+1	1368420..1369151	-	243	182684351	aldB	SPCG_1381	-	alpha-acetolactate decarboxylase
1382	 43.71	0	1369293..1370564	+	423	182684352	-	SPCG_1382	-	hypothetical protein
1383	 39.34	0	1370584..1371399	-	271	182684353	-	SPCG_1383	-	amino acid ABC transporter, amino acid-binding protein
1384	 42.05	0	1371556..1372209	-	217	182684354	-	SPCG_1384	-	phosphate transport system regulatory protein PhoU, putative
1385	 43.21	0	1372221..1372979	-	252	182684355	-	SPCG_1385	-	phosphate ABC transporter, ATP-binding protein, putative
1386	 41.92	0	1372992..1373795	-	267	182684356	-	SPCG_1386	-	phosphate ABC transporter, ATP-binding protein, putative
1387	 44.75	+1	1373806..1374690	-	294	182684357	-	SPCG_1387	-	phosphate ABC transporter, permease protein, putative
1388	 43.68	0	1374680..1375597	-	305	182684358	-	SPCG_1388	-	phosphate ABC transporter, permease protein, putative
1389	 44.03	0	1375597..1376475	-	292	182684359	-	SPCG_1389	-	phosphate ABC transporter, phosphate-binding protein, putative
1390	 45.59	+1	1377049..1378353	-	434	182684360	-	SPCG_1390	-	NOL1/NOP2/sun family protein
1391	 44.32	+1	1378354..1379127	-	257	182684361	-	SPCG_1391	-	inositol monophosphatase family protein
1392	 41.58	0	1379117..1379395	-	92	182684362	-	SPCG_1392	-	hypothetical protein
1393	 36.32	0	1379395..1379796	-	133	182684363	spxA	SPCG_1393	-	transcriptional regulator Spx
1394	 39.94	0	1380006..1380656	-	216	182684364	-	SPCG_1394	-	hypothetical protein
1395	 46.12	+1	1380613..1381386	-	257	182684365	-	SPCG_1395	-	HAD superfamily hydrolase
1396	 41.73	0	1381397..1382134	-	245	182684366	-	SPCG_1396	-	acyl-ACP thioesterase, putative
1397	 42.53	0	1382139..1383269	-	376	182684367	hemN	SPCG_1397	-	coproporphyrinogen III oxidase
1398	 38.46	0	1383353..1383742	-	129	182684368	-	SPCG_1398	-	hypothetical protein
1399	 40.10	0	1383758..1384141	-	127	182684369	-	SPCG_1399	-	hypothetical protein
1400	 41.45	0	1384142..1384942	-	266	182684370	lgt	SPCG_1400	-	prolipoprotein diacylglyceryl transferase
1401	 43.74	0	1384923..1385873	-	316	182684371	hprK	SPCG_1401	-	HPr kinase/phosphorylase
1402	 36.82	0	1385988..1386188	-	66	182684372	rpsU	SPCG_1402	-	ribosomal protein S21
1403	 41.91	0	1386304..1387026	-	240	182684373	nagB	SPCG_1403	-	glucosamine-6-phosphate isomerase
1404	 47.45	+1	1387150..1388190	+	346	182684374	queA	SPCG_1404	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
1405	 39.74	0	1388851..1389240	-	129	182684375	-	SPCG_1405	-	choline binding protein
1406	 41.49	0	1390701..1391252	-	183	182684376	-	SPCG_1406	-	acetyltransferase
1407	 47.64	+1	1391602..1392426	-	274	182684377	nadE	SPCG_1407	-	NAD(+) synthetase
1408	 45.52	+1	1392423..1393883	-	486	182684378	-	SPCG_1408	-	nicotinate phosphoribosyltransferase
1409	 34.56	-1	1393999..1394487	-	162	182684379	-	SPCG_1409	-	hypothetical protein
1410	 27.11	-2	1395150..1395551	-	133	182684380	-	SPCG_1410	-	hypothetical protein
1411	 24.44	-2	1395567..1395701	-	44	182684381	-	SPCG_1411	-	hypothetical protein
1412	 30.22	-1	1395711..1396031	-	106	182684382	-	SPCG_1412	-	hypothetical protein
1413	 26.51	-2	1396041..1396289	-	82	182684383	-	SPCG_1413	-	hypothetical protein
1414	 42.98	0	1396792..1397517	-	241	182684384	-	SPCG_1414	-	U32 family peptidase
1415	 32.14	-1	1397670..1397837	+	55	182684385	-	SPCG_1415	-	hypothetical protein
1416	 43.91	0	1398092..1399396	-	434	182684386	-	SPCG_1416	-	U32 family peptidase
1417	 27.87	-2	1400002..1400184	+	60	182684387	-	SPCG_1417	-	type II restriction endonuclease, uncharacterized, truncation
1418	 31.22	-1	1400368..1400556	+	62	182684388	-	SPCG_1418	-	type II restriction endonuclease, uncharacterized, truncation
1419	 27.79	-2	1400553..1401743	+	396	182684389	-	SPCG_1419	-	type II DNA modification methyltransferase, putative
1420	 32.65	-1	1401990..1402136	+	48	182684390	-	SPCG_1420	-	hypothetical protein
1421	 29.10	-2	1402258..1403250	-	330	182684391	-	SPCG_1421	-	AraC family transcriptional regulator
1422	 32.08	-1	1403404..1405164	+	586	182684392	-	SPCG_1422	-	ABC transporter, ATP-binding/permease protein
1423	 31.73	-1	1405124..1406869	+	581	182684393	-	SPCG_1423	-	ABC transporter, ATP-binding protein
1424	 32.06	-1	1406880..1407509	+	209	182684394	-	SPCG_1424	-	hypothetical protein
1425	 33.53	-1	1407458..1407967	+	169	182684395	-	SPCG_1425	-	hypothetical protein
1426	 29.89	-2	1407955..1409319	+	454	182684396	-	SPCG_1426	-	ABC transporter, ATP-binding protein
1427	 46.80	+1	1410250..1410546	-	98	182684397	-	SPCG_1427	-	hypothetical protein
1428	 40.35	0	1410619..1410903	-	94	182684398	-	SPCG_1428	-	hypothetical protein
1429	 39.61	0	1410950..1411156	-	68	182684399	-	SPCG_1429	-	hypothetical protein
1430	 39.49	0	1411320..1411514	-	64	182684400	-	SPCG_1430	-	hypothetical protein
1431	 42.62	0	1411833..1412069	-	78	182684401	-	SPCG_1431	-	hypothetical protein
1432	 34.17	-1	1412050..1412289	-	79	182684402	-	SPCG_1432	-	IS66 family Orf1
1433	 42.16	0	1412539..1414101	-	520	182684403	-	SPCG_1433	-	bifunctional GMP synthase/glutamine amidotransferase protein
1434	 41.53	0	1414234..1414941	+	235	182684404	-	SPCG_1434	-	GntR family transcriptional regulator
1435	 42.53	0	1414984..1415940	-	318	182684405	-	SPCG_1435	-	membrane protein
1436	 40.71	0	1415889..1416824	-	311	182684406	-	SPCG_1436	-	hypothetical protein
1437	 35.90	0	1416821..1417561	-	246	182684407	cppA	SPCG_1437	-	cppA protein
1438	 39.15	0	1417630..1418265	-	211	182684408	-	SPCG_1438	-	platelet activating factor, putative
1439	 44.08	0	1418267..1419094	-	275	182684409	-	SPCG_1439	-	cof family protein
1440	 39.88	0	1419116..1419451	-	111	182684410	-	SPCG_1440	-	hypothetical protein
1441	 39.77	0	1419452..1419964	-	170	182684411	-	SPCG_1441	-	hypothetical protein
1442	 43.09	0	1420058..1420180	-	40	182684412	-	SPCG_1442	-	hypothetical protein
1443	 43.14	0	1420692..1421303	+	203	182684413	def	SPCG_1443	-	peptide deformylase
1444	 42.78	0	1421315..1422076	+	253	182684414	trmH	SPCG_1444	-	spoU rRNA methylase family protein
1445	 42.21	0	1422115..1423026	-	303	182684415	trxB	SPCG_1445	-	thioredoxin reductase
1446	 39.24	0	1423092..1423328	-	78	182684416	-	SPCG_1446	-	hypothetical protein
1447	 41.53	0	1423394..1424137	-	247	182684417	-	SPCG_1447	-	amino acid ABC transporter, ATP-binding protein
1448	 44.19	0	1424137..1424937	-	266	182684418	-	SPCG_1448	-	amino acid ABC transporter, permease protein
1449	 36.69	0	1425095..1425451	-	118	182684419	-	SPCG_1449	-	hypothetical protein
1450	 42.11	0	1425464..1425976	-	170	182684420	ogt	SPCG_1450	-	methylated-DNA--protein-cysteine S-methyltransferase
1451	 42.02	0	1425976..1426470	-	164	182684421	-	SPCG_1451	-	acetyltransferase
1452	 39.74	0	1426599..1427051	+	150	182684422	-	SPCG_1452	-	hypothetical protein
1453	 40.59	0	1427048..1427695	+	215	182684423	-	SPCG_1453	-	hemolysin
1454	 28.47	-2	1428047..1429363	-	438	182684424	-	SPCG_1454	-	hypothetical protein
1455	 33.21	-1	1429381..1430181	-	266	182684425	-	SPCG_1455	-	ABC transporter, ATP-binding protein
1456	 42.22	0	1430669..1431253	-	194	182684426	-	SPCG_1456	-	hypothetical protein
39.55	MEAN

4.71	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.