IslandPathversion 1.0

IslandPath Analysis: Streptococcus pneumoniae CGSP14



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.55 STD DEV: 4.71
Streptococcus pneumoniae CGSP14, complete genome - 1..2209198
2206 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1271	 32.29	-1	1253749..1253844	-	31	182684241	-	SPCG_1271	-	hypothetical protein
1272	 43.06	0	1254186..1255532	+	448	182684242	gdhA	SPCG_1272	-	glutamate dehydrogenase
1273	 27.24	-2	1255821..1259432	-	1203	182684243	-	SPCG_1273	-	glutamate dehydrogenase
1274	 30.64	-1	1259712..1260899	-	395	182684244	-	SPCG_1274	-	site-specific recombinase
1275	 29.13	-2	1260871..1261179	-	102	182684245	-	SPCG_1275	-	hypothetical protein
1276	 28.31	-2	1261741..1263570	-	609	182684246	-	SPCG_1276	-	Tn5252, relaxase
1277	 28.14	-2	1263557..1263922	-	121	182684247	-	SPCG_1277	-	Tn5252, ORF 9 protein
1278	 30.25	-1	1263927..1264283	-	118	182684248	-	SPCG_1278	-	Tn5252, ORF 10 protein
1279	 27.06	-2	1264667..1264921	-	84	182684249	-	SPCG_1279	-	hypothetical protein
1280	 31.66	-1	1264987..1268991	-	1334	182684250	-	SPCG_1280	-	DNA-dependent ATPase I and helicase II
1281	 31.01	-1	1269113..1269499	-	128	182684251	-	SPCG_1281	-	hypothetical protein
1282	 32.60	-1	1269571..1270521	-	316	182684252	-	SPCG_1282	-	hypothetical protein
1283	 27.52	-2	1270606..1271724	-	372	182684253	-	SPCG_1283	-	hypothetical protein
1284	 28.16	-2	1271986..1273821	-	611	182684254	-	SPCG_1284	-	hypothetical protein
1285	 28.32	-2	1274199..1274477	-	92	182684255	-	SPCG_1285	-	hypothetical protein
1286	 31.35	-1	1274452..1275156	-	234	182684256	-	SPCG_1286	-	phosphoserine phosphatase
1287	 28.22	-2	1275209..1275775	-	188	182684257	-	SPCG_1287	-	hypothetical protein
1288	 27.56	-2	1275868..1276092	-	74	182684258	-	SPCG_1288	-	hypothetical protein
1289	 28.64	-2	1276181..1276798	-	205	182684259	-	SPCG_1289	-	hypothetical protein
1290	 30.98	-1	1277120..1277842	-	240	182684260	-	SPCG_1290	-	hypothetical protein
1291	 26.07	-2	1278159..1279094	+	311	182684261	-	SPCG_1291	-	putative replication initiation protein Rep(RC)
1292	 30.41	-1	1279959..1280609	-	216	182684262	-	SPCG_1292	-	chloramphenicol acetyltransferase
1293	 28.51	-2	1280780..1281028	-	82	182684263	-	SPCG_1293	-	hypothetical protein
1294	 30.29	-1	1281267..1282055	-	262	182684264	-	SPCG_1294	-	hypothetical protein
1295	 36.89	0	1282531..1283289	-	252	182684265	-	SPCG_1295	-	hypothetical protein
1296	 32.70	-1	1283289..1283765	-	158	182684266	-	SPCG_1296	-	transcriptional regulator, putative
1297	 31.50	-1	1283835..1284107	-	90	182684267	-	SPCG_1297	-	hypothetical protein
1298	 33.07	-1	1284145..1284528	-	127	182684268	-	SPCG_1298	-	hypothetical protein
1299	 39.32	0	1284525..1284758	-	77	182684269	-	SPCG_1299	-	hypothetical protein
1300	 34.44	-1	1284809..1285894	-	361	182684270	-	SPCG_1300	-	hypothetical protein
1301	 35.36	0	1285904..1286545	-	213	182684271	-	SPCG_1301	-	parvulin-like peptidyl-prolyl isomerase
1302	 27.27	-2	1286705..1286902	+	65	182684272	-	SPCG_1302	-	hypothetical protein
1303	 33.33	-1	1286916..1287233	-	105	182684273	-	SPCG_1303	-	hypothetical protein
1304	 38.25	0	1287226..1287510	-	94	182684274	-	SPCG_1304	-	hypothetical protein
1305	 36.75	0	1287585..1293818	-	2077	182684275	-	SPCG_1305	-	SNF2 family protein
1306	 38.44	0	1293851..1294261	-	136	182684276	-	SPCG_1306	-	hypothetical protein
1307	 35.34	0	1294413..1295108	-	231	182684277	-	SPCG_1307	-	hypothetical protein
1308	 39.05	0	1295217..1298030	-	937	182684278	-	SPCG_1308	-	hypothetical protein
1309	 37.13	0	1298042..1300357	-	771	182684279	-	SPCG_1309	-	hypothetical protein
1310	 34.16	-1	1300347..1300709	-	120	182684280	-	SPCG_1310	-	hypothetical protein
1311	 39.18	0	1300763..1301617	-	284	182684281	-	SPCG_1311	-	hypothetical protein
1312	 41.56	0	1301634..1301876	-	80	182684282	-	SPCG_1312	-	hypothetical protein
1313	 36.74	0	1301897..1303777	-	626	182684283	-	SPCG_1313	-	hypothetical protein
1314	 36.67	0	1303774..1304283	-	169	182684284	-	SPCG_1314	-	hypothetical protein
1315	 37.67	0	1304252..1304551	-	99	182684285	-	SPCG_1315	-	hypothetical protein
1316	 31.42	-1	1304834..1305670	-	278	182684286	-	SPCG_1316	-	hypothetical protein
1317	 30.70	-1	1305670..1306314	-	214	182684287	-	SPCG_1317	-	hypothetical protein
1318	 33.33	-1	1306549..1306668	+	39	182684288	-	SPCG_1318	-	hypothetical protein
1319	 40.32	0	1306691..1307005	+	104	182684289	-	SPCG_1319	-	hypothetical protein
1320	 41.60	0	1307021..1307407	+	128	182684290	-	SPCG_1320	-	hypothetical protein
1321	 40.04	0	1307436..1308821	+	461	182684291	-	SPCG_1321	-	hypothetical protein
1322	 40.31	0	1308999..1310417	+	472	182684292	-	SPCG_1322	-	hypothetical protein
1323	 33.33	-1	1310674..1311459	+	261	182684293	-	SPCG_1323	-	erythromycin ribosome methylase
1324	 37.75	0	1311797..1312339	+	180	182684294	-	SPCG_1324	-	streptothricin acetyltransferase
1325	 44.91	+1	1312432..1313226	+	264	182684295	-	SPCG_1325	-	aminoglycoside phosphotransferase type III
1326	 34.17	-1	1314404..1314643	+	79	182684296	-	SPCG_1326	-	omega2 protein
1327	 33.06	-1	1314900..1315637	+	245	182684297	-	SPCG_1327	-	rRNA methylase
1328	 34.41	-1	1315992..1316546	+	184	182684298	-	SPCG_1328	-	resolvase
1329	 34.91	0	1316550..1319468	+	972	182684299	-	SPCG_1329	-	transposase
1330	 38.33	0	1319524..1319763	-	79	182684300	-	SPCG_1330	-	hypothetical protein
1331	 37.73	0	1320259..1320690	+	143	182684301	-	SPCG_1331	-	hypothetical protein
1332	 37.23	0	1320687..1320917	+	76	182684302	-	SPCG_1332	-	hypothetical protein
1333	 35.29	0	1321378..1321581	+	67	182684303	-	SPCG_1333	-	hypothetical protein
1334	 36.76	0	1321663..1322625	+	320	182684304	-	SPCG_1334	-	hypothetical protein
1335	 38.76	0	1322622..1322879	+	85	182684305	-	SPCG_1335	-	hypothetical protein
1336	 34.35	-1	1323094..1323681	-	195	182684306	-	SPCG_1336	-	hypothetical protein
1337	 38.03	0	1323684..1323917	-	77	182684307	-	SPCG_1337	-	hypothetical protein
1338	 33.56	-1	1324303..1324752	-	149	182684308	-	SPCG_1338	-	hypothetical protein
1339	 38.78	0	1324736..1326094	-	452	182684309	-	SPCG_1339	-	type II DNA modification methyltransferase Spn5252IP
1340	 34.74	-1	1326193..1326972	-	259	182684310	-	SPCG_1340	-	replication initiator A, N-terminal
1341	 35.63	0	1326969..1327142	-	57	182684312	-	SPCG_1341	-	hypothetical protein
1342	 27.21	-2	1327118..1327264	+	48	182684311	-	SPCG_1342	-	hypothetical protein
1343	 39.55	0	1327330..1327731	+	133	182684313	rplL	SPCG_1343	-	50S ribosomal protein L7/L12
1344	 42.55	0	1327788..1328351	-	187	182684314	rplJ	SPCG_1344	-	50S ribosomal protein L10
1345	 43.08	0	1328538..1330004	-	488	182684315	trzA	SPCG_1345	-	chlorohydrolase
1346	 42.90	0	1330099..1331886	-	595	182684316	-	SPCG_1346	-	ABC transporter, ATP-binding/permease protein
1347	 42.96	0	1331849..1333573	-	574	182684317	-	SPCG_1347	-	ABC transporter, ATP-binding/permease protein
1348	 43.98	0	1333631..1334569	-	312	182684318	msrA	SPCG_1348	-	bifunctional methionine sulfoxide reductase A/B protein
1349	 45.75	+1	1334864..1335733	-	289	182684319	thrB	SPCG_1349	-	homoserine kinase
1350	 42.50	0	1335735..1337054	-	439	182684320	hom	SPCG_1350	-	homoserine dehydrogenase
1351	 39.97	0	1337172..1337924	-	250	182684321	mecA	SPCG_1351	-	adaptor protein
1352	 32.95	-1	1338051..1339085	-	344	182684322	-	SPCG_1352	-	hypothetical protein
1353	 35.84	0	1339114..1340547	-	477	182684323	-	SPCG_1353	-	hypothetical protein
1354	 36.78	0	1340563..1341549	-	328	182684324	-	SPCG_1354	-	glycosyl transferase family protein
1355	 38.95	0	1341551..1342654	-	367	182684325	-	SPCG_1355	-	glycosyl transferase, group 1
1356	 41.37	0	1342644..1343489	-	281	182684326	licD3	SPCG_1356	-	licD3 protein
1357	 36.04	0	1343540..1343650	-	36	182684327	-	SPCG_1357	-	hypothetical protein
1358	 41.33	0	1343768..1345042	-	424	182684328	-	SPCG_1358	-	psr protein
1359	 42.29	0	1345039..1345887	-	282	182684329	pheA	SPCG_1359	-	prephenate dehydratase
1360	 41.93	0	1345884..1346360	-	158	182684330	aroK	SPCG_1360	-	shikimate kinase
1361	 44.91	+1	1346353..1347648	-	431	182684331	aroA	SPCG_1361	-	3-phosphoshikimate 1-carboxyvinyltransferase
1362	 39.23	0	1347728..1348066	-	112	182684332	-	SPCG_1362	-	hypothetical protein
1363	 44.20	0	1348077..1349180	-	367	182684333	tyrA	SPCG_1363	-	prephenate dehydrogenase
1364	 46.87	+1	1349190..1350356	-	388	182684334	aroC	SPCG_1364	-	chorismate synthase
1365	 44.76	+1	1350366..1351433	-	355	182684335	aroB	SPCG_1365	-	3-dehydroquinate synthase
1366	 43.63	0	1351452..1352306	-	284	182684336	aroE	SPCG_1366	-	shikimate/quinate 5-dehydrogenase
1367	 44.10	0	1352296..1352973	-	225	182684337	aroD	SPCG_1367	-	3-dehydroquinate dehydratase
1368	 41.26	0	1352970..1354142	-	390	182684338	-	SPCG_1368	-	hypothetical protein
1369	 39.95	0	1354820..1356481	-	553	182684339	-	SPCG_1369	-	hypothetical protein
1370	 42.40	0	1356435..1357250	-	271	182684340	-	SPCG_1370	-	ABC transporter, ATP-binding protein
39.55	MEAN

4.71	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.