IslandPathversion 1.0

IslandPath Analysis: Streptococcus pneumoniae CGSP14



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.55 STD DEV: 4.71
Streptococcus pneumoniae CGSP14, complete genome - 1..2209198
2206 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1132	 27.03	-2	1103008..1103118	-	36	182684102	-	SPCG_1132	-	hypothetical protein
1133	 43.65	0	1103165..1104133	+	322	182684103	acoA	SPCG_1133	-	acetoin dehydrogenase, E1 component, alpha subunit, putative
1134	 44.21	0	1104149..1105141	+	330	182684104	acoB	SPCG_1134	-	acetoin dehydrogenase, E1 component, beta subunit, putative
1135	 42.29	0	1105275..1106402	+	375	182684105	acoC	SPCG_1135	-	dihydrolipoamide acetyltransferase
1136	 42.49	0	1106448..1108151	+	567	182684106	acoL	SPCG_1136	-	acetoin dehydrogenase complex, E3 component, dihydrolipoamide dehydrogenase, putative
1137	 39.90	0	1108215..1109204	+	329	182684107	-	SPCG_1137	-	lipoate-protein ligase, putative
1138	 38.19	0	1109269..1110339	-	356	182684108	xerC	SPCG_1138	-	tyrosine recombinase
1139	 41.63	0	1110923..1112488	-	521	182684109	-	SPCG_1139	-	voltage-gated chloride channel family protein
1140	 41.41	0	1112489..1113268	-	259	182684110	-	SPCG_1140	-	ribonuclease HII
1141	 41.67	0	1113255..1114106	-	283	182684111	-	SPCG_1141	-	GTP-binding protein
1142	 35.87	0	1114351..1119834	-	1827	182684112	zmpD	SPCG_1142	-	zinc metalloprotease ZmpD, putative
1143	 33.04	-1	1119878..1125604	-	1908	182684113	iga	SPCG_1143	-	immunoglobulin A1 protease
1144	 41.73	0	1125813..1126991	-	392	182684114	-	SPCG_1144	-	hypothetical protein
1145	 43.36	0	1127161..1130811	-	1216	182684115	rexA	SPCG_1145	-	exonuclease RexA
1146	 43.17	0	1130808..1134110	-	1100	182684116	rexB	SPCG_1146	-	exonuclease RexB
1147	 36.49	0	1134591..1134938	+	115	182684117	-	SPCG_1147	-	IS630-Spn1, transposase Orf1
1148	 39.31	0	1135487..1136005	+	172	182684118	-	SPCG_1148	-	degenerate transposase
1149	 37.69	0	1136286..1136813	+	175	182684119	-	SPCG_1149	-	degenerate transposase
1150	 43.07	0	1136988..1138292	-	434	182684120	eno	SPCG_1150	-	phosphopyruvate hydratase
1151	 35.12	0	1138456..1138902	+	148	182684121	-	SPCG_1151	-	hypothetical protein
1152	 39.70	0	1138899..1139228	-	109	182684122	-	SPCG_1152	-	hypothetical protein
1153	 41.03	0	1139197..1140027	-	276	182684123	-	SPCG_1153	-	hypothetical protein
1154	 37.74	0	1140024..1140182	-	52	182684124	-	SPCG_1154	-	phosphoserine phosphatase, truncation
1155	 41.67	0	1140297..1140668	-	123	182684125	-	SPCG_1155	-	phosphoserine phosphatase
1156	 40.79	0	1140727..1142160	-	477	182684126	glgA	SPCG_1156	-	glycogen synthase
1157	 38.25	0	1142157..1143296	-	379	182684127	glgD	SPCG_1157	-	glycogen biosynthesis protein GlgD
1158	 41.12	0	1143286..1144428	-	380	182684128	glgC	SPCG_1158	-	glucose-1-phosphate adenylyltransferase
1159	 40.69	0	1144418..1146346	-	642	182684129	glgB	SPCG_1159	-	glycogen branching enzyme
1160	 41.68	0	1146795..1148219	-	474	182684130	gapN	SPCG_1160	-	glyceraldehyde-3-phosphate dehydrogenase, NADP-dependent
1161	 29.63	-2	1148551..1148712	-	53	182684131	-	SPCG_1161	-	hypothetical protein
1162	 40.92	0	1148763..1151042	-	759	182684132	pulI	SPCG_1162	-	pullulanase, putative
1163	 43.90	0	1151154..1153112	-	652	182684133	ligA	SPCG_1163	-	DNA ligase
1164	 37.57	0	1153205..1154383	-	392	182684134	-	SPCG_1164	-	transporter, putative
1165	 36.56	0	1154463..1154555	-	30	182684135	-	SPCG_1165	-	hypothetical protein
1166	 38.10	0	1154689..1155339	-	216	182684136	-	SPCG_1166	-	hypothetical protein
1167	 41.75	0	1155312..1157213	-	633	182684137	-	SPCG_1167	-	ABC transporter, ATP-binding protein
1168	 40.94	0	1157643..1157918	-	91	182684138	hlpA	SPCG_1168	-	DNA-binding protein HU
1169	 38.57	0	1158025..1158864	-	279	182684139	-	SPCG_1169	-	degV family protein
1170	 37.10	0	1159006..1159854	+	282	182684140	-	SPCG_1170	-	hypothetical protein
1171	 37.58	0	1159947..1160864	-	305	182684141	mreA	SPCG_1171	-	riboflavin kinase/flavin adenine dinucleotide synthase
1172	 37.98	0	1161202..1161330	+	42	182684142	-	SPCG_1172	-	hypothetical protein
1173	 42.69	0	1161302..1161472	+	56	182684143	-	SPCG_1173	-	hypothetical protein
1174	 42.18	0	1161818..1162111	-	97	182684144	rpmA	SPCG_1174	-	50S ribosomal protein L27
1175	 42.03	0	1162128..1162472	-	114	182684145	-	SPCG_1175	-	hypothetical protein
1176	 40.00	0	1162488..1162877	-	129	182684146	rplU	SPCG_1176	-	50S ribosomal protein L21
1177	 37.91	0	1162990..1163688	-	232	182684147	-	SPCG_1177	-	hypothetical protein
1178	 41.33	0	1164090..1164389	+	99	182684148	-	SPCG_1178	-	hypothetical protein
1179	 43.18	0	1164730..1165704	-	324	182684149	pta	SPCG_1179	-	phosphate acetyltransferase
1180	 41.03	0	1165748..1166644	-	298	182684150	rluD	SPCG_1180	-	ribosomal large subunit pseudouridine synthase D
1181	 41.52	0	1166641..1167471	-	276	182684151	ppnK	SPCG_1181	-	inorganic polyphosphate/ATP-NAD kinase
1182	 40.03	0	1167443..1168114	-	223	182684152	-	SPCG_1182	-	hypothetical protein
1183	 38.60	0	1168242..1168811	+	189	182684153	-	SPCG_1183	-	hypothetical protein
1184	 40.52	0	1168924..1169883	+	319	182684154	-	SPCG_1184	-	ribose-phosphate pyrophosphokinase
1185	 43.10	0	1169893..1171008	+	371	182684155	-	SPCG_1185	-	aminotransferase, class-V
1186	 36.49	0	1171013..1171360	+	115	182684156	-	SPCG_1186	-	hypothetical protein
1187	 40.08	0	1171332..1171583	+	83	182684157	-	SPCG_1187	-	hypothetical protein
1188	 42.21	0	1171666..1172307	+	213	182684158	-	SPCG_1188	-	redox-sensing transcriptional repressor Rex
1189	 42.17	0	1172325..1173014	+	229	182684159	-	SPCG_1189	-	glutamine amidotransferase, class I
1190	 40.66	0	1173011..1173706	-	231	182684160	radC	SPCG_1190	-	DNA repair protein RadC
1191	 43.24	0	1173734..1176025	-	763	182684161	pcrA	SPCG_1191	-	ATP-dependent DNA helicase PcrA
1192	 38.72	0	1176216..1176605	-	129	182684162	-	SPCG_1192	-	IS1381 transposase protein B
1193	 39.81	0	1176631..1176939	-	102	182684163	-	SPCG_1193	-	IS1381 transposase protein A
1194	 41.70	0	1177401..1178261	-	286	182684164	map	SPCG_1194	-	methionine aminopeptidase
1195	 40.77	0	1178277..1179554	-	425	182684165	-	SPCG_1195	-	hypothetical protein
1196	 35.84	0	1179547..1180104	-	185	182684166	-	SPCG_1196	-	acetyltransferase
1197	 40.48	0	1180114..1181373	-	419	182684167	murZ	SPCG_1197	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
1198	 38.15	0	1182575..1183093	+	172	182684168	-	SPCG_1198	-	degenerate transposase
1199	 38.07	0	1183374..1183901	+	175	182684169	-	SPCG_1199	-	degenerate transposase
1200	 39.62	0	1183952..1184110	-	52	182684170	-	SPCG_1200	-	hypothetical protein
1201	 44.01	0	1184120..1185430	-	436	182684171	obg	SPCG_1201	-	GTP1/Obg family GTP-binding protein
1202	 32.59	-1	1185494..1185628	-	44	182684172	-	SPCG_1202	-	hypothetical protein
1203	 43.50	0	1185687..1185863	-	58	182684173	-	SPCG_1203	-	hypothetical protein
1204	 41.40	0	1185894..1187219	-	441	182684174	-	SPCG_1204	-	glycosyl transferase, group 1
1205	 39.70	0	1187235..1188317	-	360	182684175	cpoA	SPCG_1205	-	glycosyl transferase CpoA
1206	 40.50	0	1188393..1188755	-	120	182684176	-	SPCG_1206	-	hypothetical protein
1207	 43.33	0	1188736..1189845	-	369	182684177	rpoD	SPCG_1207	-	RNA polymerase sigma factor
1208	 41.78	0	1189848..1191623	-	591	182684178	dnaG	SPCG_1208	-	DNA primase
1209	 39.26	0	1191698..1192456	-	252	182684179	-	SPCG_1209	-	ABC transporter, ATP-binding protein
1210	 42.56	0	1192453..1193319	-	288	182684180	-	SPCG_1210	-	hypothetical protein
1211	 39.03	0	1193388..1194422	-	344	182684181	-	SPCG_1211	-	hypothetical protein
1212	 38.30	0	1194805..1197501	-	898	182684182	ppc	SPCG_1212	-	phosphoenolpyruvate carboxylase
1213	 39.35	0	1197521..1198750	-	409	182684183	ftsW	SPCG_1213	-	cell division protein FtsW, putative
1214	 40.00	0	1199013..1199207	-	64	182684184	-	SPCG_1214	-	IS1381 transposase protein A, truncation
1215	 33.03	-1	1199312..1199644	-	110	182684185	-	SPCG_1215	-	hypothetical protein
1216	 31.53	-1	1199830..1200438	-	202	182684186	-	SPCG_1216	-	hypothetical protein
1217	 34.17	-1	1200522..1202315	-	597	182684187	-	SPCG_1217	-	resolvase family site-specific recombinase
1218	 29.41	-2	1202765..1202968	-	67	182684188	-	SPCG_1218	-	hypothetical protein
1219	 40.74	0	1203392..1203607	+	71	182684189	-	SPCG_1219	-	degenerate transposase
1220	 41.07	0	1203732..1204106	+	124	182684190	-	SPCG_1220	-	degenerate transposase
1221	 43.61	0	1204091..1204411	+	106	182684191	-	SPCG_1221	-	degenerate transposase
1222	 32.82	-1	1205044..1205829	-	261	182684192	-	SPCG_1222	-	hypothetical protein
1223	 34.31	-1	1206088..1206699	-	203	182684193	-	SPCG_1223	-	daunorubicin resistance transmembrane protein
1224	 37.78	0	1206650..1207234	-	194	182684194	-	SPCG_1224	-	hypothetical protein
1225	 41.90	0	1207295..1207504	-	69	182684195	-	SPCG_1225	-	hypothetical protein
1226	 27.65	-2	1208658..1209449	-	263	182684196	-	SPCG_1226	-	hypothetical protein
1227	 31.87	-1	1209526..1211163	-	545	182684197	-	SPCG_1227	-	drug-resistant methionyl-tRNA synthetase
1228	 30.81	-1	1211231..1211905	-	224	182684198	-	SPCG_1228	-	chloramphenicol acetyltransferase
1229	 38.94	0	1212706..1213704	+	332	182684199	-	SPCG_1229	-	IS1239 transposase
1230	 41.11	0	1214276..1215136	-	286	182684200	-	SPCG_1230	-	DNA processing protein DprA, putative
1231	 35.80	0	1215220..1215909	-	229	182684201	-	SPCG_1231	-	licC protein
39.55	MEAN

4.71	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.