IslandPathversion 1.0

IslandPath Analysis: Streptococcus pneumoniae CGSP14



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.55 STD DEV: 4.71
Streptococcus pneumoniae CGSP14, complete genome - 1..2209198
2206 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1073	 44.05	0	1043948..1045618	+	556	182684043	fhs	SPCG_1073	-	formate--tetrahydrofolate ligase
1074	 42.52	0	1045947..1047122	+	391	182684044	mutY	SPCG_1074	-	A/G-specific adenine glycosylase
1075	 40.87	0	1047126..1047881	+	251	182684045	-	SPCG_1075	-	DNA-binding response regulator
1076	 39.85	0	1047874..1049223	+	449	182684046	-	SPCG_1076	-	sensory box sensor histidine kinase
1077	 42.35	0	1049225..1050034	+	269	182684047	vicX	SPCG_1077	-	vicX protein
1078	 35.97	0	1050065..1050367	+	100	182684048	-	SPCG_1078	-	hypothetical protein
1079	 34.85	0	1050360..1050623	+	87	182684049	-	SPCG_1079	-	hypothetical protein
1080	 31.05	-1	1050598..1051254	+	218	182684050	-	SPCG_1080	-	ion transporter, putative
1081	 41.74	0	1051582..1052580	-	332	182684051	-	SPCG_1081	-	L-lactate dehydrogenase
1082	 42.56	0	1052705..1055230	+	841	182684052	-	SPCG_1082	-	DNA gyrase subunit A
1083	 32.66	-1	1055230..1055973	+	247	182684053	-	SPCG_1083	-	hypothetical protein
1084	 40.35	0	1056217..1057014	+	265	182684054	-	SPCG_1084	-	FNT family protein
1085	 37.40	0	1057162..1057284	+	40	182684055	-	SPCG_1085	-	O-acetylhomoserine sulfhydrylase, truncation
1086	 42.11	0	1057306..1058421	+	371	182684056	-	SPCG_1086	-	O-acetylhomoserine sulfhydrylase, truncation
1087	 41.10	0	1058517..1059791	+	424	182684057	-	SPCG_1087	-	hypothetical protein
1088	 26.30	-2	1059803..1062988	+	1061	182684058	-	SPCG_1088	-	hypothetical protein
1089	 45.05	+1	1063089..1063967	+	292	182684059	truB	SPCG_1089	-	tRNA pseudouridine synthase B
1090	 35.42	0	1064116..1064211	+	31	182684060	-	SPCG_1090	-	hypothetical protein
1091	 40.92	0	1064208..1064510	+	100	182684061	-	SPCG_1091	-	hypothetical protein
1092	 43.97	0	1064618..1065256	+	212	182684062	udK	SPCG_1092	-	uridine kinase
1093	 43.28	0	1065378..1066724	+	448	182684063	xseA	SPCG_1093	-	exodeoxyribonuclease VII large subunit
1094	 41.31	0	1066702..1066914	+	70	182684064	xseB	SPCG_1094	-	exodeoxyribonuclease VII small subunit
1095	 44.41	+1	1066911..1067786	+	291	182684065	-	SPCG_1095	-	geranyltranstransferase
1096	 44.98	+1	1067779..1068594	+	271	182684066	-	SPCG_1096	-	hemolysin A, putative
1097	 36.57	0	1068587..1069018	+	143	182684067	ahrC	SPCG_1097	-	transcriptional repressor, putative
1098	 41.79	0	1069025..1070692	+	555	182684068	recN	SPCG_1098	-	DNA repair protein RecN
1099	 43.76	0	1070694..1071422	+	242	182684069	pphA	SPCG_1099	-	serine/threonine protein phosphatase
1100	 43.40	0	1071438..1073324	+	628	182684070	-	SPCG_1100	-	GTP-binding protein LepA
1101	 35.63	0	1073737..1074258	+	173	182684071	-	SPCG_1101	-	PTS system IIA component, putative
1102	 39.93	0	1074296..1074598	+	100	182684072	-	SPCG_1102	-	hypothetical protein
1103	 38.72	0	1075036..1075425	+	129	182684073	-	SPCG_1103	-	IS1381 transposase protein B
1104	 36.81	0	1075594..1075938	+	114	182684074	-	SPCG_1104	-	galactose mutarotase-like protein
1105	 41.31	0	1076095..1076520	+	141	182684075	lacA	SPCG_1105	-	galactose-6-phosphate isomerase
1106	 39.53	0	1076551..1077066	+	171	182684076	lacB	SPCG_1106	-	galactose-6-phosphate isomerase
1107	 40.65	0	1077077..1078006	+	309	182684077	lacC	SPCG_1107	-	tagatose-6-phosphate kinase
1108	 40.98	0	1078008..1078988	+	326	182684078	lacD	SPCG_1108	-	tagatose 1,6-diphosphate aldolase
1109	 35.84	0	1079222..1080058	+	278	182684079	lacT	SPCG_1109	-	transcription antiterminator LacT
1110	 41.82	0	1080094..1080411	+	105	182684080	-	SPCG_1110	-	PTS system, lactose-specific IIA component
1111	 35.25	0	1080383..1082107	+	574	182684081	-	SPCG_1111	-	PTS system, lactose-specific IIBC components
1112	 39.83	0	1082313..1083728	+	471	182684082	lacG	SPCG_1112	-	6-phospho-beta-galactosidase
1113	 29.46	-2	1083771..1084028	+	85	182684083	-	SPCG_1113	-	hypothetical protein
1114	 34.78	-1	1084307..1085068	-	253	182684084	lacR	SPCG_1114	-	lactose phosphotransferase system repressor
1115	 38.54	0	1085378..1085896	+	172	182684085	-	SPCG_1115	-	degenerate transposase
1116	 37.69	0	1086177..1086704	+	175	182684086	-	SPCG_1116	-	degenerate transposase
1117	 41.12	0	1086742..1087704	-	320	182684087	nrdF	SPCG_1117	-	ribonucleotide-diphosphate reductase beta subunit
1118	 41.44	0	1087892..1090051	-	719	182684088	nrdE	SPCG_1118	-	ribonucleotide-diphosphate reductase alpha subunit
1119	 37.97	0	1090132..1090368	-	78	182684089	nrdH	SPCG_1119	-	nrdH-redoxin
1120	 41.67	0	1090701..1090964	+	87	182684090	-	SPCG_1120	-	phosphocarrier protein HPr
1121	 43.54	0	1090970..1092703	+	577	182684091	-	SPCG_1121	-	phosphoenolpyruvate-protein phosphotransferase
1122	 41.07	0	1092922..1095480	+	852	182684092	-	SPCG_1122	-	hypothetical protein
1123	 30.40	-1	1095622..1095996	+	124	182684093	-	SPCG_1123	-	hypothetical protein
1124	 31.92	-1	1096072..1096284	+	70	182684094	-	SPCG_1124	-	degenerate transposase
1125	 32.48	-1	1096449..1097387	+	312	182684095	-	SPCG_1125	-	hypothetical protein
1126	 41.57	0	1097409..1098161	+	250	182684096	-	SPCG_1126	-	HAD superfamily hydrolase
1127	 26.04	-2	1098219..1098821	+	200	182684097	-	SPCG_1127	-	hypothetical protein
1128	 44.10	0	1098942..1099610	+	222	182684098	ung	SPCG_1128	-	uracil-DNA glycosylase
1129	 44.73	+1	1099620..1100084	+	154	182684099	mutX	SPCG_1129	-	mutator MutT protein
1130	 43.50	0	1100097..1101365	+	422	182684100	-	SPCG_1130	-	dihydroorotase
1131	 42.14	0	1101650..1103011	+	453	182684101	-	SPCG_1131	-	MATE efflux family protein
1132	 27.03	-2	1103008..1103118	-	36	182684102	-	SPCG_1132	-	hypothetical protein
1133	 43.65	0	1103165..1104133	+	322	182684103	acoA	SPCG_1133	-	acetoin dehydrogenase, E1 component, alpha subunit, putative
1134	 44.21	0	1104149..1105141	+	330	182684104	acoB	SPCG_1134	-	acetoin dehydrogenase, E1 component, beta subunit, putative
1135	 42.29	0	1105275..1106402	+	375	182684105	acoC	SPCG_1135	-	dihydrolipoamide acetyltransferase
1136	 42.49	0	1106448..1108151	+	567	182684106	acoL	SPCG_1136	-	acetoin dehydrogenase complex, E3 component, dihydrolipoamide dehydrogenase, putative
1137	 39.90	0	1108215..1109204	+	329	182684107	-	SPCG_1137	-	lipoate-protein ligase, putative
1138	 38.19	0	1109269..1110339	-	356	182684108	xerC	SPCG_1138	-	tyrosine recombinase
1139	 41.63	0	1110923..1112488	-	521	182684109	-	SPCG_1139	-	voltage-gated chloride channel family protein
1140	 41.41	0	1112489..1113268	-	259	182684110	-	SPCG_1140	-	ribonuclease HII
1141	 41.67	0	1113255..1114106	-	283	182684111	-	SPCG_1141	-	GTP-binding protein
1142	 35.87	0	1114351..1119834	-	1827	182684112	zmpD	SPCG_1142	-	zinc metalloprotease ZmpD, putative
1143	 33.04	-1	1119878..1125604	-	1908	182684113	iga	SPCG_1143	-	immunoglobulin A1 protease
1144	 41.73	0	1125813..1126991	-	392	182684114	-	SPCG_1144	-	hypothetical protein
1145	 43.36	0	1127161..1130811	-	1216	182684115	rexA	SPCG_1145	-	exonuclease RexA
1146	 43.17	0	1130808..1134110	-	1100	182684116	rexB	SPCG_1146	-	exonuclease RexB
1147	 36.49	0	1134591..1134938	+	115	182684117	-	SPCG_1147	-	IS630-Spn1, transposase Orf1
1148	 39.31	0	1135487..1136005	+	172	182684118	-	SPCG_1148	-	degenerate transposase
1149	 37.69	0	1136286..1136813	+	175	182684119	-	SPCG_1149	-	degenerate transposase
1150	 43.07	0	1136988..1138292	-	434	182684120	eno	SPCG_1150	-	phosphopyruvate hydratase
1151	 35.12	0	1138456..1138902	+	148	182684121	-	SPCG_1151	-	hypothetical protein
1152	 39.70	0	1138899..1139228	-	109	182684122	-	SPCG_1152	-	hypothetical protein
1153	 41.03	0	1139197..1140027	-	276	182684123	-	SPCG_1153	-	hypothetical protein
1154	 37.74	0	1140024..1140182	-	52	182684124	-	SPCG_1154	-	phosphoserine phosphatase, truncation
1155	 41.67	0	1140297..1140668	-	123	182684125	-	SPCG_1155	-	phosphoserine phosphatase
1156	 40.79	0	1140727..1142160	-	477	182684126	glgA	SPCG_1156	-	glycogen synthase
1157	 38.25	0	1142157..1143296	-	379	182684127	glgD	SPCG_1157	-	glycogen biosynthesis protein GlgD
1158	 41.12	0	1143286..1144428	-	380	182684128	glgC	SPCG_1158	-	glucose-1-phosphate adenylyltransferase
1159	 40.69	0	1144418..1146346	-	642	182684129	glgB	SPCG_1159	-	glycogen branching enzyme
1160	 41.68	0	1146795..1148219	-	474	182684130	gapN	SPCG_1160	-	glyceraldehyde-3-phosphate dehydrogenase, NADP-dependent
1161	 29.63	-2	1148551..1148712	-	53	182684131	-	SPCG_1161	-	hypothetical protein
1162	 40.92	0	1148763..1151042	-	759	182684132	pulI	SPCG_1162	-	pullulanase, putative
1163	 43.90	0	1151154..1153112	-	652	182684133	ligA	SPCG_1163	-	DNA ligase
1164	 37.57	0	1153205..1154383	-	392	182684134	-	SPCG_1164	-	transporter, putative
1165	 36.56	0	1154463..1154555	-	30	182684135	-	SPCG_1165	-	hypothetical protein
1166	 38.10	0	1154689..1155339	-	216	182684136	-	SPCG_1166	-	hypothetical protein
1167	 41.75	0	1155312..1157213	-	633	182684137	-	SPCG_1167	-	ABC transporter, ATP-binding protein
1168	 40.94	0	1157643..1157918	-	91	182684138	hlpA	SPCG_1168	-	DNA-binding protein HU
1169	 38.57	0	1158025..1158864	-	279	182684139	-	SPCG_1169	-	degV family protein
1170	 37.10	0	1159006..1159854	+	282	182684140	-	SPCG_1170	-	hypothetical protein
1171	 37.58	0	1159947..1160864	-	305	182684141	mreA	SPCG_1171	-	riboflavin kinase/flavin adenine dinucleotide synthase
1172	 37.98	0	1161202..1161330	+	42	182684142	-	SPCG_1172	-	hypothetical protein
39.55	MEAN

4.71	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.