IslandPathversion 1.0

IslandPath Analysis: Streptococcus pneumoniae CGSP14



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.55 STD DEV: 4.71
Streptococcus pneumoniae CGSP14, complete genome - 1..2209198
2206 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
983	 36.34	0	960997..961329	+	110	182683953	-	SPCG_0983	-	hypothetical protein
984	 42.48	0	961365..962588	-	407	182683954	pepT	SPCG_0984	-	peptidase T
985	 37.90	0	962743..963837	+	364	182683955	hemH	SPCG_0985	-	ferrochelatase
986	 33.33	-1	963884..963976	-	30	182683956	-	SPCG_0986	-	hypothetical protein
987	 36.39	0	963992..964744	-	250	182683957	-	SPCG_0987	-	degenerate transposase
988	 38.46	0	964737..965282	-	181	182683958	-	SPCG_0988	-	degenerate transposase
989	 37.30	0	965398..965775	-	125	182683959	mscL	SPCG_0989	-	large conductance mechanosensitive channel protein MscL
990	 31.02	-1	965857..966288	-	143	182683960	-	SPCG_0990	-	gtrA family protein
991	 37.11	0	966339..966920	+	193	182683961	-	SPCG_0991	-	hypothetical protein
992	 40.00	0	967198..967452	+	84	182683962	-	SPCG_0992	-	hypothetical protein
993	 42.34	0	967678..968754	+	358	182683963	asd	SPCG_0993	-	aspartate-semialdehyde dehydrogenase
994	 43.38	0	968810..969745	+	311	182683964	dapA	SPCG_0994	-	dihydrodipicolinate synthase
995	 44.17	0	969792..971231	-	479	182683965	thdF	SPCG_0995	-	tRNA modification GTPase
996	 44.00	0	971302..971526	-	74	182683966	xylH	SPCG_0996	-	4-oxalocrotonate tautomerase
997	 43.99	0	971607..972197	+	196	182683967	tdk	SPCG_0997	-	thymidine kinase
998	 45.19	+1	972194..973273	+	359	182683968	prfA	SPCG_0998	-	peptide chain release factor 1
999	 38.45	0	973273..974112	+	279	182683969	hemK	SPCG_0999	-	hemK protein
1000	 43.33	0	974069..974698	+	209	182683970	-	SPCG_1000	-	Sua5/YciO/YrdC family protein
1001	 40.76	0	974661..975131	+	156	182683971	-	SPCG_1001	-	acetyltransferase
1002	 42.16	0	975193..976449	+	418	182683972	glyA	SPCG_1002	-	serine hydroxymethyltransferase
1003	 37.60	0	976424..977431	+	335	182683973	-	SPCG_1003	-	hypothetical protein
1004	 41.63	0	977431..978045	+	204	182683974	-	SPCG_1004	-	hypothetical protein
1005	 40.10	0	978119..979093	+	324	182683975	-	SPCG_1005	-	hypothetical protein
1006	 37.63	0	979062..979154	+	30	182683976	-	SPCG_1006	-	hypothetical protein
1007	 40.84	0	979167..980792	+	541	182683977	-	SPCG_1007	-	RNA methyltransferase
1008	 22.55	-2	981918..982019	+	33	182683978	-	SPCG_1008	-	hypothetical protein
1009	 30.90	-1	982140..983165	+	341	182683979	-	SPCG_1009	-	iron-compound ABC transporter, iron compound-binding protein
1010	 32.07	-1	983136..983690	-	184	182683981	-	SPCG_1010	-	hypothetical protein
1011	 33.24	-1	983143..984162	+	339	182683980	-	SPCG_1011	-	iron-compound ABC transporter, permease protein
1012	 30.46	-1	984162..985169	+	335	182683982	-	SPCG_1012	-	iron-compound ABC transporter, permease protein
1013	 33.71	-1	985169..985963	+	264	182683983	-	SPCG_1013	-	iron-compound ABC transporter, ATP-binding protein
1014	 23.58	-2	986832..987149	+	105	182683984	-	SPCG_1014	-	hypothetical protein
1015	 29.97	-2	987454..988167	+	237	182683985	-	SPCG_1015	-	hypothetical protein
1016	 24.73	-2	988185..989102	+	305	182683986	-	SPCG_1016	-	hypothetical protein
1017	 29.88	-2	989535..989939	+	134	182683987	-	SPCG_1017	-	hypothetical protein
1018	 31.14	-1	990113..990841	+	242	182683988	-	SPCG_1018	-	putative phage-associated protein
1019	 35.80	0	991525..991686	+	53	182683989	-	SPCG_1019	-	hypothetical protein
1020	 33.39	-1	991778..993457	+	559	182683990	-	SPCG_1020	-	resolvase family site-specific recombinase
1021	 33.99	-1	993680..994291	+	203	182683991	-	SPCG_1021	-	hypothetical protein
1022	 31.82	-1	994604..994801	+	65	182683992	-	SPCG_1022	-	hypothetical protein
1023	 33.99	-1	994863..995621	+	252	182683993	-	SPCG_1023	-	hypothetical protein
1024	 40.12	0	995679..996533	+	284	182683994	-	SPCG_1024	-	hydrolase, putative
1025	 36.32	0	996594..997529	+	311	182683995	-	SPCG_1025	-	hypothetical protein
1026	 39.29	0	997668..999431	+	587	182683996	nplT	SPCG_1026	-	neopullulanase
1027	 33.33	-1	999517..999834	+	105	182683997	-	SPCG_1027	-	hypothetical protein
1028	 29.08	-2	999880..1000161	+	93	182683998	-	SPCG_1028	-	hypothetical protein
1029	 32.02	-1	1000549..1001082	+	177	182683999	-	SPCG_1029	-	transcriptional regulator, putative
1030	 35.56	0	1001082..1001843	+	253	182684000	-	SPCG_1030	-	hypothetical protein
1031	 26.25	-2	1001871..1002647	+	258	182684001	-	SPCG_1031	-	phosphoesterase, putative
1032	 32.28	-1	1002650..1003027	+	125	182684002	-	SPCG_1032	-	hypothetical protein
1033	 35.28	0	1003859..1004218	+	119	182684003	-	SPCG_1033	-	Tn5252, ORF 10 protein
1034	 35.25	0	1004228..1004593	+	121	182684004	-	SPCG_1034	-	Tn5252, ORF 9 protein
1035	 33.17	-1	1004580..1006430	+	616	182684005	-	SPCG_1035	-	Tn5252, relaxase
1036	 38.18	0	1006683..1007363	+	226	182684006	-	SPCG_1036	-	degenerate transposase
1037	 41.48	0	1007381..1007650	+	89	182684007	-	SPCG_1037	-	degenerate transposase
1038	 38.84	0	1008811..1009809	-	332	182684008	-	SPCG_1038	-	IS1239 transposase
1039	 34.77	-1	1010368..1011411	+	347	182684009	-	SPCG_1039	-	hypothetical protein
1040	 42.69	0	1011560..1013665	+	701	182684010	topA	SPCG_1040	-	DNA topoisomerase I
1041	 37.50	0	1013886..1014245	+	119	182684011	-	SPCG_1041	-	hypothetical protein
1042	 42.97	0	1014338..1014970	+	210	182684012	cutC	SPCG_1042	-	copper homeostasis protein CutC
1043	 39.42	0	1015014..1015670	+	218	182684013	-	SPCG_1043	-	hypothetical protein
1044	 42.13	0	1015689..1016222	+	177	182684014	-	SPCG_1044	-	hypothetical protein
1045	 41.38	0	1016338..1016772	+	144	182684015	-	SPCG_1045	-	hypothetical protein
1046	 43.74	0	1016784..1017821	+	345	182684016	-	SPCG_1046	-	3-isopropylmalate dehydrogenase
1047	 38.15	0	1017818..1018087	+	89	182684017	-	SPCG_1047	-	hypothetical protein
1048	 43.33	0	1018091..1018450	+	119	182684018	-	SPCG_1048	-	3-isopropylmalate dehydratase, small subunit, putative
1049	 45.83	+1	1018669..1018812	+	47	182684019	-	SPCG_1049	-	hypothetical protein
1050	 41.38	0	1018912..1019085	+	57	182684020	-	SPCG_1050	-	hypothetical protein
1051	 45.61	+1	1019066..1019236	+	56	182684021	-	SPCG_1051	-	hypothetical protein
1052	 32.40	-1	1019398..1021332	+	644	182684022	-	SPCG_1052	-	endonuclease, putative
1053	 35.86	0	1021292..1022635	+	447	182684023	-	SPCG_1053	-	hypothetical protein
1054	 42.15	0	1022810..1023796	+	328	182684024	guaC	SPCG_1054	-	guanosine 5'-monophosphate oxidoreductase
1055	 40.34	0	1024114..1024812	+	232	182684025	rncS	SPCG_1055	-	ribonuclease III
1056	 43.08	0	1024803..1028342	+	1179	182684026	-	SPCG_1056	-	hypothetical protein
1057	 40.13	0	1028339..1029133	+	264	182684027	-	SPCG_1057	-	cof family protein
1058	 42.25	0	1029133..1029951	+	272	182684028	-	SPCG_1058	-	cof family protein
1059	 42.02	0	1029955..1031244	+	429	182684029	ftsY	SPCG_1059	-	signal recognition particle-docking protein FtsY
1060	 41.73	0	1031290..1032777	-	495	182684030	zwf	SPCG_1060	-	glucose-6-phosphate 1-dehydrogenase
1061	 42.65	0	1032926..1033666	-	246	182684031	-	SPCG_1061	-	amino acid ABC transporter, ATP-binding protein
1062	 39.38	0	1033666..1035831	-	721	182684032	-	SPCG_1062	-	amino acid ABC transporter, amino acid-binding protein/permease protein
1063	 39.20	0	1036000..1036953	+	317	182684033	-	SPCG_1063	-	hypothetical protein
1064	 45.40	+1	1037030..1039018	+	662	182684034	uvrB	SPCG_1064	-	excinuclease ABC subunit B
1065	 32.09	-1	1039028..1039591	+	187	182684035	-	SPCG_1065	-	acetyltransferase
1066	 34.36	-1	1039557..1040045	+	162	182684036	-	SPCG_1066	-	acetyltransferase
1067	 43.16	0	1040119..1040586	+	155	182684037	-	SPCG_1067	-	mutT/nudix family protein
1068	 42.25	0	1040583..1041098	-	171	182684038	-	SPCG_1068	-	biotin repressor family transcriptional regulator
1069	 38.14	0	1041110..1041691	-	193	182684039	-	SPCG_1069	-	hypothetical protein
1070	 38.12	0	1041919..1042482	-	187	182684040	-	SPCG_1070	-	membrane protein
1071	 40.94	0	1042466..1043017	-	183	182684041	-	SPCG_1071	-	phosphopantothenoylcysteine synthase/decarboxylase
1072	 39.72	0	1043029..1043733	-	234	182684042	-	SPCG_1072	-	hypothetical protein
1073	 44.05	0	1043948..1045618	+	556	182684043	fhs	SPCG_1073	-	formate--tetrahydrofolate ligase
1074	 42.52	0	1045947..1047122	+	391	182684044	mutY	SPCG_1074	-	A/G-specific adenine glycosylase
1075	 40.87	0	1047126..1047881	+	251	182684045	-	SPCG_1075	-	DNA-binding response regulator
1076	 39.85	0	1047874..1049223	+	449	182684046	-	SPCG_1076	-	sensory box sensor histidine kinase
1077	 42.35	0	1049225..1050034	+	269	182684047	vicX	SPCG_1077	-	vicX protein
1078	 35.97	0	1050065..1050367	+	100	182684048	-	SPCG_1078	-	hypothetical protein
1079	 34.85	0	1050360..1050623	+	87	182684049	-	SPCG_1079	-	hypothetical protein
1080	 31.05	-1	1050598..1051254	+	218	182684050	-	SPCG_1080	-	ion transporter, putative
1081	 41.74	0	1051582..1052580	-	332	182684051	-	SPCG_1081	-	L-lactate dehydrogenase
1082	 42.56	0	1052705..1055230	+	841	182684052	-	SPCG_1082	-	DNA gyrase subunit A
39.55	MEAN

4.71	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.