IslandPath Analysis: Streptococcus pneumoniae D39



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.03   STD DEV: 4.59
Streptococcus pneumoniae D39, complete genome - 1..2046115
1914 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
821	 38.08	0	886953..887753	-	266	116517017	-	SPD_0873	-	hypothetical protein
822	 41.52	0	887897..889276	+	459	116516172	glmU	SPD_0874	-	UDP-N-acetylglucosamine pyrophosphorylase
823	 41.39	0	889286..889831	+	181	116515368	-	SPD_0875	-	hydrolase, NUDIX family protein
824	 34.60	-1	889843..890157	+	104	116516438	-	SPD_0876	-	hypothetical protein
825	 43.43	0	890174..890866	+	230	116516739	mtnN	SPD_0877	-	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
826	 37.80	0	890943..891434	+	163	116515331	-	SPD_0878	-	hypothetical protein
827	 39.93	0	891532..892122	+	196	116515938	-	SPD_0879	-	DNA polymerase III subunit epsilon
828	 36.11	0	892131..893894	+	587	116516500	-	SPD_0880	-	hypothetical protein
829	 36.17	0	894614..894754	+	46	116515422	-	SPD_0882	-	IS630-Spn1, transposase Orf2, truncation
830	 48.26	+1	894915..895115	+	66	116516489	-	SPD_0883	-	hypothetical protein
831	 43.70	0	895157..895561	+	134	116517020	-	SPD_0884	-	hypothetical protein
832	 36.16	0	895792..896499	+	235	116516271	ccdA-2	SPD_0885	-	cytochrome c-type biogenesis protein CcdA
833	 37.99	0	896510..897067	+	185	116517059	-	SPD_0886	-	thioredoxin family protein
834	 41.09	0	897441..898832	+	463	116516274	-	SPD_0887	-	amino acid permease family protein
835	 38.45	0	898975..899892	+	305	116515739	lmb	SPD_0888	-	adhesion lipoprotein
836	 41.57	0	899900..902461	+	853	116516147	phtD	SPD_0889	-	pneumococcal histidine triad protein D precursor
837	 36.44	0	902671..905790	+	1039	116516522	phtE	SPD_0890	-	pneumococcal histidine triad protein E precursor
838	 38.25	0	907590..908219	+	209	116516916	-	SPD_0893	-	hypothetical protein
839	 42.34	0	908262..909482	-	406	116515861	pepT	SPD_0894	-	peptidase T
840	 37.81	0	909637..910731	+	364	116517033	hemH	SPD_0895	-	ferrochelatase
841	 37.30	0	910773..911150	-	125	116516166	mscL	SPD_0896	-	large conductance mechanosensitive channel protein MscL
842	 30.56	-2	911232..911663	-	143	116517022	-	SPD_0897	-	GtrA family protein
843	 36.08	0	911786..912295	+	169	116515492	-	SPD_0898	-	hypothetical protein
844	 41.41	0	912810..913886	+	358	116516437	asd	SPD_0900	-	aspartate-semialdehyde dehydrogenase
845	 42.95	0	913942..914877	+	311	116516238	dapA	SPD_0901	-	dihydrodipicolinate synthase
846	 44.61	0	914924..916297	-	457	116516848	trmE	SPD_0902	-	tRNA modification GTPase TrmE
847	 46.45	+1	916434..916616	-	60	116515386	xylH	SPD_0903	-	4-oxalocrotonate tautomerase
848	 44.33	0	916739..917338	+	199	116516420	tdk	SPD_0904	-	thymidine kinase
849	 30.00	-2	917328..917807	+	159	116516070	-	SPD_0905	-	acetyltransferase, GNAT family protein
850	 45.09	+1	917817..918896	+	359	116517153	prfA	SPD_0906	-	peptide chain release factor 1
851	 37.98	0	918896..919735	+	279	116517180	hemK	SPD_0907	-	HemK protein
852	 43.78	0	919719..920321	+	200	116516461	-	SPD_0908	-	Sua5/YciO/YrdC/YwlC family protein
853	 40.28	0	920323..920754	+	143	116515388	-	SPD_0909	-	acetyltransferase, GNAT family protein
854	 42.56	0	920816..922072	+	418	116517005	glyA	SPD_0910	-	serine hydroxymethyltransferase
855	 38.00	0	922047..923054	+	335	116516178	-	SPD_0911	-	hypothetical protein
856	 41.63	0	923054..923668	+	204	116516801	pvaA	SPD_0912	-	hypothetical protein
857	 40.51	0	923742..924716	+	324	116516896	-	SPD_0913	-	hypothetical protein
858	 40.75	0	924790..926421	+	543	116515807	rumA-1	SPD_0914	-	23S rRNA (uracil-5-)-methyltransferase RumA
859	 31.09	-1	927770..928795	+	341	116517168	-	SPD_0915	-	iron-compound ABC transporter, iron compound-binding protein
860	 33.43	-1	928785..929792	+	335	116516465	-	SPD_0916	-	iron-compound ABC transporter, permease protein
861	 30.36	-2	929792..930799	+	335	116516717	-	SPD_0917	-	iron-compound ABC transporter, permease protein
862	 33.58	-1	930799..931593	+	264	116515486	-	SPD_0918	-	iron-compound ABC transporter, ATP-binding protein
863	 28.85	-2	932495..932650	+	51	116516970	-	SPD_0919	-	hypothetical protein
864	 35.80	0	933334..933495	+	53	116515934	-	SPD_0920	-	hypothetical protein
865	 33.57	-1	933587..935266	+	559	116515333	-	SPD_0921	-	site-specific recombinase, resolvase family protein
866	 33.99	-1	935489..936100	+	203	116516667	-	SPD_0922	-	hypothetical protein
867	 31.82	-1	936413..936610	+	65	116515866	-	SPD_0923	-	hypothetical protein
868	 32.84	-1	936672..937487	+	271	116516982	-	SPD_0924	-	hypothetical protein
869	 40.12	0	937487..938341	+	284	116516066	-	SPD_0925	-	hydrolase, putative
870	 36.72	0	938453..939337	+	294	116517124	-	SPD_0926	-	hypothetical protein
871	 39.23	0	939476..941239	+	587	116516706	nplT	SPD_0927	-	neopullulanase
872	 33.65	-1	941325..941642	+	105	116515723	-	SPD_0928	-	hypothetical protein
873	 29.08	-2	941688..941969	+	93	116515888	-	SPD_0929	-	hypothetical protein
874	 32.08	-1	942414..942890	+	158	116515960	-	SPD_0930	-	transcriptional regulator, putative
875	 35.96	0	942890..943651	+	253	116515566	-	SPD_0931	-	hypothetical protein
876	 26.38	-2	943679..944455	+	258	116516641	-	SPD_0932	-	hypothetical protein
877	 31.79	-1	944383..944835	+	150	116516404	-	SPD_0933	-	hypothetical protein
878	 35.28	-1	945667..946026	+	119	116515499	-	SPD_0934	-	Tn5252, ORF 10 protein
879	 34.55	-1	946036..946365	+	109	116517032	-	SPD_0935	-	Tn5252, ORF 9 protein
880	 34.14	-1	946388..947005	+	205	116516207	-	SPD_0936	-	Tn5252, relaxase
881	 30.61	-2	947686..948273	+	195	116515758	-	SPD_0938	-	hypothetical protein
882	 29.94	-2	948318..949172	-	284	116516388	-	SPD_0939	-	transcriptional activator, Rgg/GadR/MutR family protein
883	 30.40	-2	949424..950719	+	431	116515679	-	SPD_0940	-	UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase, putative
884	 31.53	-1	950721..951329	+	202	116516558	-	SPD_0941	-	hypothetical protein
885	 28.22	-2	951339..952121	+	260	116515485	-	SPD_0942	-	hypothetical protein
886	 27.36	-2	952144..954036	+	630	116517038	-	SPD_0943	-	hypothetical protein
887	 29.90	-2	954065..955171	+	368	116515471	-	SPD_0944	-	hypothetical protein
888	 29.37	-2	955179..956489	+	436	116516531	-	SPD_0945	-	AMP-binding enzyme, putative
889	 27.37	-2	956491..957714	+	407	116515709	-	SPD_0946	-	hypothetical protein
890	 30.77	-2	957719..958654	+	311	116515898	-	SPD_0947	-	hypothetical protein
891	 27.92	-2	958669..959868	+	399	116516989	-	SPD_0948	-	hypothetical protein
892	 32.67	-1	959932..960531	+	199	116516041	-	SPD_0949	-	hexapeptide repeat-containing transferase
893	 30.53	-2	960914..962125	+	403	116515531	-	SPD_0950	-	transporter, major facilitator family protein
894	 34.68	-1	962784..963005	+	73	116515940	-	SPD_0951	-	hypothetical protein
895	 39.19	0	963907..965136	+	409	116517219	-	SPD_0952	-	cell division protein FtsW, putative
896	 38.34	0	965156..967852	+	898	116516040	ppc	SPD_0953	-	phosphoenolpyruvate carboxylase
897	 39.03	0	968235..969269	+	344	116517122	-	SPD_0954	-	hypothetical protein
898	 42.68	0	969338..970204	+	288	116515329	-	SPD_0955	-	amino acid or sugar ABC transport systems, permease protein
899	 39.26	0	970201..970959	+	252	116516417	-	SPD_0956	-	ABC transporter, ATP-binding protein
900	 42.19	0	971049..972809	+	586	116515597	dnaG	SPD_0957	-	DNA primase
901	 43.15	0	972812..973921	+	369	116516638	rpoD	SPD_0958	-	RNA polymerase sigma factor RpoD
902	 41.52	0	973935..974264	+	109	116516796	-	SPD_0959	-	hypothetical protein
903	 39.73	0	974298..975422	+	374	116516765	cpoA	SPD_0960	-	glycosyl transferase CpoA
904	 41.48	0	975438..976763	+	441	116515479	-	SPD_0961	-	glycosyl transferase, group 1
905	 44.07	0	976794..976970	+	58	116516478	-	SPD_0962	-	hypothetical protein
906	 32.59	-1	977029..977163	+	44	116516165	-	SPD_0963	-	hypothetical protein
907	 43.63	0	977227..978537	+	436	116515321	obgE	SPD_0964	-	GTPase ObgE
908	 40.25	0	978547..978705	+	52	116516023	-	SPD_0965	-	hypothetical protein
909	 40.87	0	981327..982586	+	419	116515884	murA-1	SPD_0967	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
910	 35.87	0	982602..983153	+	183	116516477	-	SPD_0968	-	acetyltransferase, GNAT family protein
911	 40.92	0	983146..984423	+	425	116517139	-	SPD_0969	-	hypothetical protein
912	 41.70	0	984439..985299	+	286	116516526	map	SPD_0970	-	methionine aminopeptidase
913	 39.35	0	985680..986078	+	132	116515413	-	SPD_0971	-	IS1381, transposase OrfA
914	 39.23	0	986093..986482	+	129	116516586	-	SPD_0972	-	IS1381, transposase OrfB
915	 43.24	0	986673..988964	+	763	116515714	pcrA	SPD_0973	-	ATP-dependent DNA helicase PcrA
916	 41.12	0	989007..989687	+	226	116516612	radC	SPD_0975	-	DNA repair protein RadC
917	 41.74	0	989684..990373	-	229	116517015	-	SPD_0974	-	class I glutamine amidotransferase, putative
918	 41.90	0	990391..991032	-	213	116515408	-	SPD_0976	-	redox-sensing transcriptional repressor Rex
919	 40.08	0	991115..991366	-	83	116516287	-	SPD_0977	-	hypothetical protein
920	 36.21	0	991338..991685	-	115	116515573	-	SPD_0978	-	hypothetical protein
40.03	MEAN

4.59	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.