IslandPath Analysis: Streptococcus pneumoniae D39



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.03   STD DEV: 4.59
Streptococcus pneumoniae D39, complete genome - 1..2046115
1914 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
689	 38.67	0	744769..745293	-	174	116516744	-	SPD_0731	-	topology modulation protein
690	 38.40	0	745346..745582	-	78	116515680	rpsT	SPD_0732	-	30S ribosomal protein S20
691	 38.65	0	745650..746570	-	306	116515774	coaA	SPD_0733	-	pantothenate kinase
692	 33.56	-1	746768..747208	+	146	116516378	-	SPD_0734	-	hypothetical protein
693	 39.93	0	747415..748005	+	196	116516099	-	SPD_0735	-	methyltransferase small subunit
694	 42.96	0	748002..749279	+	425	116516475	pdp	SPD_0736	-	pyrimidine-nucleoside phosphorylase
695	 41.63	0	749297..749959	+	220	116517157	deoC	SPD_0737	-	deoxyribose-phosphate aldolase
696	 41.54	0	749946..750335	+	129	116516117	cdd-1	SPD_0738	-	cytidine deaminase
697	 41.88	0	750425..751477	+	350	116516951	-	SPD_0739	-	membrane lipoprotein TmpC precursor
698	 41.93	0	751621..753156	+	511	116515854	-	SPD_0740	-	sugar ABC transporter, ATP-binding protein
699	 44.48	0	753149..754207	+	352	116515653	-	SPD_0741	-	sugar ABC transporter, permease protein, putative
700	 42.74	0	754210..755166	+	318	116516674	-	SPD_0742	-	sugar ABC transporter, permease protein, putative
701	 41.43	0	756641..757282	-	213	116515637	-	SPD_0745	-	putative glycerol-3-phosphate acyltransferase PlsY
702	 45.16	+1	757418..759361	+	647	116516535	parE	SPD_0746	-	DNA topoisomerase IV subunit B
703	 34.13	-1	759482..759607	+	41	116516296	-	SPD_0747	-	hypothetical protein
704	 43.97	0	759772..762252	+	826	116515631	parC	SPD_0748	-	DNA topoisomerase IV subunit A
705	 41.35	0	762382..763404	+	340	116516002	ilvE	SPD_0749	-	branched-chain amino acid aminotransferase
706	 36.03	0	763460..764164	+	234	116515710	-	SPD_0750	-	hypothetical protein
707	 37.39	0	764229..764918	+	229	116516266	-	SPD_0751	-	hypothetical protein
708	 38.53	0	764915..765838	+	307	116517099	-	SPD_0752	-	hypothetical protein
709	 39.07	0	765853..766497	+	214	116515464	pcp	SPD_0753	-	pyrrolidone-carboxylate peptidase
710	 29.44	-2	766665..766895	+	76	116516313	-	SPD_0754	-	hypothetical protein
711	 40.98	0	767268..768470	+	400	116515525	rpsA	SPD_0757	-	30S ribosomal protein S1
712	 38.96	0	770126..770623	+	165	116515639	-	SPD_0759	-	hypothetical protein
713	 41.97	0	770623..772278	+	551	116516459	dnaX	SPD_0760	-	DNA polymerase III subunits gamma and tau
714	 36.41	0	772306..772500	+	64	116515381	-	SPD_0761	-	hypothetical protein
715	 41.76	0	772650..773420	+	256	116517208	sufC	SPD_0762	-	FeS assembly ATPase SufC
716	 42.44	0	773448..774710	+	420	116516109	sufD	SPD_0763	-	hypothetical protein
717	 44.74	+1	774721..775947	+	408	116516952	sufS	SPD_0764	-	cysteine desulfurases, SufS subfamily protein
718	 40.82	0	775934..776374	+	146	116516679	-	SPD_0765	-	SUF system FeS assembly protein, NifU family protein
719	 41.83	0	776428..777840	+	470	116515674	sufB	SPD_0766	-	FeS assembly protein SufB
720	 39.86	0	778039..779280	-	413	116516506	dacC	SPD_0767	-	D-alanyl-D-alanine carboxypeptidase
721	 33.15	-1	779383..780492	+	369	116516125	-	SPD_0768	-	hypothetical protein
722	 42.78	0	781917..782657	+	246	116515565	lacR1	SPD_0771	-	lactose phosphotransferase system repressor
723	 41.01	0	782654..783565	+	303	116516872	-	SPD_0772	-	1-phosphofructokinase, putative
724	 44.60	0	783562..785514	+	650	116516221	-	SPD_0773	-	PTS system, fructose specific IIABC components
725	 43.71	0	785600..787903	+	767	116517016	-	SPD_0774	-	SpoE family protein
726	 35.77	0	787948..788481	-	177	116516509	-	SPD_0775	-	hypothetical protein
727	 44.09	0	788514..789656	+	380	116515406	-	SPD_0776	-	aminotransferase, class V
728	 42.96	0	789665..790879	+	404	116516659	thiI	SPD_0777	-	thiamine biosynthesis protein ThiI
729	 42.18	0	791014..791838	+	274	116515554	-	SPD_0778	-	hypothetical protein
730	 44.35	0	791860..792195	+	111	116517027	-	SPD_0779	-	hypothetical protein
731	 44.94	+1	792195..792599	+	134	116516246	-	SPD_0780	-	hypothetical protein
732	 41.90	0	792612..793778	+	388	116517060	-	SPD_0781	-	hypothetical protein
733	 36.28	0	794286..795779	+	497	116515872	-	SPD_0782	-	type I restriction-modification system, M subunit, putative
734	 32.19	-1	795792..796403	+	203	116515342	-	SPD_0783	-	type I restriction-modification system, S subunit, putative
735	 37.75	0	796482..799832	+	1116	116516102	-	SPD_0784	-	type I restriction-modification system, R subunit, putative
736	 42.29	0	800103..800303	+	66	116515667	-	SPD_0785	-	hypothetical protein
737	 42.25	0	800418..800888	-	156	116516573	-	SPD_0786	-	transcriptional regulator of arginine metabolism expression, putative
738	 41.25	0	800905..803178	-	757	116516024	pepX	SPD_0787	-	x-prolyl-dipeptidyl aminopeptidase
739	 39.26	0	803524..806625	+	1033	116516844	dnaE	SPD_0788	-	DNA polymerase III DnaE
740	 44.35	0	806708..807715	+	335	116515997	pfkA	SPD_0789	-	6-phosphofructokinase
741	 41.17	0	807774..809279	+	501	116516870	pyk	SPD_0790	-	pyruvate kinase
742	 37.65	0	810396..810650	-	84	116515522	-	SPD_0791	-	hypothetical protein
743	 39.40	0	811086..811958	+	290	116516105	-	SPD_0792	-	hypothetical protein
744	 33.94	-1	811971..812135	+	54	116515678	-	SPD_0793	-	hypothetical protein
745	 34.94	-1	812591..812902	+	103	116516083	-	SPD_0795	-	hypothetical protein
746	 34.73	-1	812906..813622	+	238	116517170	-	SPD_0796	-	hypothetical protein
747	 40.69	0	813752..814567	-	271	116516749	-	SPD_0797	-	hypothetical protein
748	 41.94	0	814564..815469	-	301	116516828	-	SPD_0798	-	hypothetical protein
749	 35.61	0	815470..815601	-	43	116515502	-	SPD_0799	-	hypothetical protein
750	 30.28	-2	815811..816170	+	119	116516341	-	SPD_0800	-	capsular polysaccharide biosynthesis protein, putative
751	 28.94	-2	816133..817179	+	348	116517174	-	SPD_0801	-	hypothetical protein
752	 43.24	0	817281..819410	+	709	116516081	-	SPD_0802	-	S1 RNA-binding domain-containing protein
753	 40.66	0	819905..820177	+	90	116516907	-	SPD_0803	-	hypothetical protein
754	 43.21	0	821150..821908	+	252	116515744	-	SPD_0804	-	ABC transporter, ATP-binding protein
755	 38.46	0	821910..823898	+	662	116516245	-	SPD_0805	-	transporter, permease protein, putative
756	 43.49	0	823941..824531	-	196	116515380	-	SPD_0806	-	hypothetical protein
757	 40.30	0	824611..825486	-	291	116516434	-	SPD_0807	-	IS1239, transposase, putative
758	 21.05	-2	825719..825832	-	37	116515443	-	SPD_0808	-	hypothetical protein
759	 43.83	0	826193..827668	+	491	116516967	cad	SPD_0809	-	lysine decarboxylase
760	 44.60	0	828605..829465	+	286	116515725	speE	SPD_0811	-	spermidine synthase
761	 41.59	0	829462..830721	+	419	116516766	lys1	SPD_0812	-	hypothetical protein
762	 42.64	0	830721..831848	+	375	116515395	nspC	SPD_0813	-	carboxynorspermidine decarboxylase
763	 44.11	0	831845..832930	+	361	116516045	-	SPD_0814	-	hypothetical protein
764	 43.04	0	832940..833815	+	291	116516894	-	SPD_0815	-	hydrolase, carbon-nitrogen family protein
765	 44.07	0	833996..834805	-	269	116516008	-	SPD_0816	-	Cof family protein
766	 36.46	0	835352..836023	+	223	116516715	-	SPD_0817	-	hypothetical protein
767	 40.70	0	836265..837173	+	302	116515669	-	SPD_0818	-	transcriptional regulator, LysR family protein
768	 41.13	0	837170..837631	+	153	116516537	lspA	SPD_0819	-	signal peptidase II
769	 44.48	0	837621..838508	+	295	116515398	rluD	SPD_0820	-	ribosomal large subunit pseudouridine synthase D
770	 37.26	0	838511..840394	+	627	116516225	cbpE	SPD_0821	-	choline binding protein E
771	 44.14	0	840495..841604	+	369	116516764	proB	SPD_0822	-	gamma-glutamyl kinase
772	 45.45	+1	841614..842876	+	420	116516154	proA	SPD_0823	-	gamma-glutamyl phosphate reductase
773	 44.49	0	842880..843677	+	265	116516457	proC	SPD_0824	-	pyrroline-5-carboxylate reductase
774	 45.70	+1	843793..844431	+	212	116516561	tdk	SPD_0825	-	thymidylate kinase
775	 41.30	0	844428..845318	+	296	116515715	holB	SPD_0826	-	DNA polymerase III subunit delta'
776	 44.03	0	845358..845675	+	105	116516332	-	SPD_0827	-	DNA replication intiation control protein YabA
777	 43.33	0	845678..846547	+	289	116515519	-	SPD_0828	-	hypothetical protein
778	 33.33	-1	846774..847292	+	172	116517217	-	SPD_0829	-	hypothetical protein
779	 31.64	-1	847401..848048	+	215	116516415	-	SPD_0831	-	hypothetical protein
780	 37.95	0	848037..848426	-	129	116516019	-	SPD_0830	-	IS1381, transposase OrfB
781	 39.23	0	848452..848841	-	129	116516286	-	SPD_0832	-	IS1381, transposase OrfA
782	 45.17	+1	849335..850669	+	444	116516642	gid	SPD_0833	-	tRNA (uracil-5-)-methyltransferase Gid
783	 44.44	0	850753..851490	+	245	116515310	pyrH	SPD_0834	-	uridylate kinase
784	 42.29	0	851499..852056	+	185	116516857	frr	SPD_0835	-	ribosome recycling factor
785	 44.41	0	852077..852970	+	297	116515585	-	SPD_0836	-	hypothetical protein
786	 41.20	0	852979..853194	+	71	116517068	-	SPD_0837	-	hypothetical protein
787	 45.30	+1	853280..854248	+	322	116516028	-	SPD_0838	-	PhoH family protein
788	 37.33	0	854441..854941	+	166	116516254	-	SPD_0839	-	acetyltransferase, GNAT family protein
40.03	MEAN

4.59	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.