IslandPathversion 1.0

IslandPath Analysis: Streptococcus pneumoniae D39



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.03 STD DEV: 4.59
Streptococcus pneumoniae D39, complete genome - 1..2046115
1914 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
648	 40.00	0	702615..703874	+	419	116516885	-	SPD_0688	-	hypothetical protein
649	 42.29	0	703998..705995	+	665	116516229	metG	SPD_0689	-	methionyl-tRNA synthetase
650	 41.15	0	706045..706236	+	63	116517058	-	SPD_0690	-	hypothetical protein
651	 40.19	0	706326..706646	+	106	116515400	-	SPD_0691	-	hypothetical protein
652	 37.44	0	706650..707525	+	291	116516712	-	SPD_0692	-	hypothetical protein
653	 36.35	0	707540..708466	+	308	116515786	-	SPD_0693	-	oxidoreductase, aldo/keto reductase family protein
654	 41.47	0	708545..708802	+	85	116516430	-	SPD_0694	-	hypothetical protein
655	 44.78	+1	708795..709493	+	232	116515543	fabG	SPD_0695	-	3-ketoacyl-(acyl-carrier-protein) reductase
656	 39.38	0	709504..709983	+	159	116516157	-	SPD_0696	-	MutT/nudix family protein
657	 32.92	-1	709991..710719	+	242	116516788	-	SPD_0697	-	acetyltransferase, GNAT family protein
658	 35.52	0	710761..711630	+	289	116515919	-	SPD_0698	-	hypothetical protein
659	 42.40	0	711605..712045	+	146	116516645	-	SPD_0699	-	hypothetical protein
660	 44.29	0	712168..714714	+	848	116515610	pepN	SPD_0700	-	aminopeptidase N
661	 37.25	0	714757..715497	+	246	116515465	ciaR	SPD_0701	-	DNA-binding response regulator CiaR
662	 38.50	0	715487..716821	+	444	116516689	ciaH	SPD_0702	-	sensor histidine kinase CiaH
663	 34.38	-1	716855..717142	-	95	116517218	-	SPD_0703	-	hypothetical protein
664	 40.52	0	717141..718211	+	356	116516394	-	SPD_0704	-	hypothetical protein
665	 40.23	0	718411..720861	+	816	116516668	-	SPD_0705	-	bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon
666	 40.28	0	720898..722121	+	407	116515576	-	SPD_0706	-	rod shape-determining protein RodA, putative
667	 43.60	0	722132..722686	+	184	116516953	-	SPD_0707	-	4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis protein, putative
668	 37.41	0	722771..723334	+	187	116515873	-	SPD_0708	-	hydrolase, haloacid dehalogenase-like family protein
669	 42.78	0	723349..725295	+	648	116516156	gyrB	SPD_0709	-	DNA gyrase subunit B
670	 36.34	0	725377..727104	+	575	116516893	ezrA	SPD_0710	-	septation ring formation regulator EzrA
671	 41.24	0	727898..728251	+	117	116515608	-	SPD_0711	-	hypothetical protein
672	 38.82	0	728283..728792	+	169	116516414	-	SPD_0712	-	transposase family protein
673	 37.00	0	729426..729725	-	99	116515822	-	SPD_0714	-	hypothetical protein
674	 39.48	0	729890..730312	-	140	116515664	-	SPD_0715	-	MutT/nudix family protein
675	 36.49	0	730405..730752	+	115	116517010	-	SPD_0716	-	IS630-Spn1, transposase Orf1
676	 43.43	0	731477..733735	-	752	116516310	clpE	SPD_0717	-	ATP-dependent Clp protease ATP-binding subunit ClpE
677	 41.56	0	733964..734194	-	76	116515533	-	SPD_0718	-	hypothetical protein
678	 39.18	0	734384..735067	+	227	116516598	-	SPD_0719	-	amino acid ABC transporter, permease protein
679	 43.27	0	735067..735801	+	244	116515734	-	SPD_0720	-	amino acid ABC transporter, ATP-binding protein
680	 45.51	+1	735934..736812	+	292	116515868	folD	SPD_0721	-	methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase
681	 43.87	0	736954..737826	+	290	116517034	-	SPD_0722	-	YjeF-like protein
682	 44.01	0	738108..738791	+	227	116516446	rpiA	SPD_0723	-	ribose-5-phosphate isomerase A
683	 42.33	0	738805..740016	+	403	116516348	deoB	SPD_0724	-	phosphopentomutase
684	 44.20	0	740576..741385	+	269	116515467	-	SPD_0726	-	purine nucleoside phosphorylase
685	 38.39	0	741861..742592	+	243	116516091	-	SPD_0727	-	hypothetical protein
686	 39.22	0	742638..742841	+	67	116517195	-	SPD_0728	-	hypothetical protein
687	 41.52	0	742866..743378	+	170	116516976	-	SPD_0729	-	hemolysin-related protein
688	 42.48	0	744036..744746	+	236	116515621	deoD	SPD_0730	-	purine nucleoside phosphorylase
689	 38.67	0	744769..745293	-	174	116516744	-	SPD_0731	-	topology modulation protein
690	 38.40	0	745346..745582	-	78	116515680	rpsT	SPD_0732	-	30S ribosomal protein S20
691	 38.65	0	745650..746570	-	306	116515774	coaA	SPD_0733	-	pantothenate kinase
692	 33.56	-1	746768..747208	+	146	116516378	-	SPD_0734	-	hypothetical protein
693	 39.93	0	747415..748005	+	196	116516099	-	SPD_0735	-	methyltransferase small subunit
694	 42.96	0	748002..749279	+	425	116516475	pdp	SPD_0736	-	pyrimidine-nucleoside phosphorylase
695	 41.63	0	749297..749959	+	220	116517157	deoC	SPD_0737	-	deoxyribose-phosphate aldolase
696	 41.54	0	749946..750335	+	129	116516117	cdd-1	SPD_0738	-	cytidine deaminase
697	 41.88	0	750425..751477	+	350	116516951	-	SPD_0739	-	membrane lipoprotein TmpC precursor
698	 41.93	0	751621..753156	+	511	116515854	-	SPD_0740	-	sugar ABC transporter, ATP-binding protein
699	 44.48	0	753149..754207	+	352	116515653	-	SPD_0741	-	sugar ABC transporter, permease protein, putative
700	 42.74	0	754210..755166	+	318	116516674	-	SPD_0742	-	sugar ABC transporter, permease protein, putative
701	 41.43	0	756641..757282	-	213	116515637	-	SPD_0745	-	putative glycerol-3-phosphate acyltransferase PlsY
702	 45.16	+1	757418..759361	+	647	116516535	parE	SPD_0746	-	DNA topoisomerase IV subunit B
703	 34.13	-1	759482..759607	+	41	116516296	-	SPD_0747	-	hypothetical protein
704	 43.97	0	759772..762252	+	826	116515631	parC	SPD_0748	-	DNA topoisomerase IV subunit A
705	 41.35	0	762382..763404	+	340	116516002	ilvE	SPD_0749	-	branched-chain amino acid aminotransferase
706	 36.03	0	763460..764164	+	234	116515710	-	SPD_0750	-	hypothetical protein
707	 37.39	0	764229..764918	+	229	116516266	-	SPD_0751	-	hypothetical protein
708	 38.53	0	764915..765838	+	307	116517099	-	SPD_0752	-	hypothetical protein
709	 39.07	0	765853..766497	+	214	116515464	pcp	SPD_0753	-	pyrrolidone-carboxylate peptidase
710	 29.44	-2	766665..766895	+	76	116516313	-	SPD_0754	-	hypothetical protein
711	 40.98	0	767268..768470	+	400	116515525	rpsA	SPD_0757	-	30S ribosomal protein S1
712	 38.96	0	770126..770623	+	165	116515639	-	SPD_0759	-	hypothetical protein
713	 41.97	0	770623..772278	+	551	116516459	dnaX	SPD_0760	-	DNA polymerase III subunits gamma and tau
714	 36.41	0	772306..772500	+	64	116515381	-	SPD_0761	-	hypothetical protein
715	 41.76	0	772650..773420	+	256	116517208	sufC	SPD_0762	-	FeS assembly ATPase SufC
716	 42.44	0	773448..774710	+	420	116516109	sufD	SPD_0763	-	hypothetical protein
717	 44.74	+1	774721..775947	+	408	116516952	sufS	SPD_0764	-	cysteine desulfurases, SufS subfamily protein
718	 40.82	0	775934..776374	+	146	116516679	-	SPD_0765	-	SUF system FeS assembly protein, NifU family protein
719	 41.83	0	776428..777840	+	470	116515674	sufB	SPD_0766	-	FeS assembly protein SufB
720	 39.86	0	778039..779280	-	413	116516506	dacC	SPD_0767	-	D-alanyl-D-alanine carboxypeptidase
721	 33.15	-1	779383..780492	+	369	116516125	-	SPD_0768	-	hypothetical protein
722	 42.78	0	781917..782657	+	246	116515565	lacR1	SPD_0771	-	lactose phosphotransferase system repressor
723	 41.01	0	782654..783565	+	303	116516872	-	SPD_0772	-	1-phosphofructokinase, putative
724	 44.60	0	783562..785514	+	650	116516221	-	SPD_0773	-	PTS system, fructose specific IIABC components
725	 43.71	0	785600..787903	+	767	116517016	-	SPD_0774	-	SpoE family protein
726	 35.77	0	787948..788481	-	177	116516509	-	SPD_0775	-	hypothetical protein
727	 44.09	0	788514..789656	+	380	116515406	-	SPD_0776	-	aminotransferase, class V
728	 42.96	0	789665..790879	+	404	116516659	thiI	SPD_0777	-	thiamine biosynthesis protein ThiI
729	 42.18	0	791014..791838	+	274	116515554	-	SPD_0778	-	hypothetical protein
730	 44.35	0	791860..792195	+	111	116517027	-	SPD_0779	-	hypothetical protein
731	 44.94	+1	792195..792599	+	134	116516246	-	SPD_0780	-	hypothetical protein
732	 41.90	0	792612..793778	+	388	116517060	-	SPD_0781	-	hypothetical protein
733	 36.28	0	794286..795779	+	497	116515872	-	SPD_0782	-	type I restriction-modification system, M subunit, putative
734	 32.19	-1	795792..796403	+	203	116515342	-	SPD_0783	-	type I restriction-modification system, S subunit, putative
735	 37.75	0	796482..799832	+	1116	116516102	-	SPD_0784	-	type I restriction-modification system, R subunit, putative
736	 42.29	0	800103..800303	+	66	116515667	-	SPD_0785	-	hypothetical protein
737	 42.25	0	800418..800888	-	156	116516573	-	SPD_0786	-	transcriptional regulator of arginine metabolism expression, putative
738	 41.25	0	800905..803178	-	757	116516024	pepX	SPD_0787	-	x-prolyl-dipeptidyl aminopeptidase
739	 39.26	0	803524..806625	+	1033	116516844	dnaE	SPD_0788	-	DNA polymerase III DnaE
740	 44.35	0	806708..807715	+	335	116515997	pfkA	SPD_0789	-	6-phosphofructokinase
741	 41.17	0	807774..809279	+	501	116516870	pyk	SPD_0790	-	pyruvate kinase
742	 37.65	0	810396..810650	-	84	116515522	-	SPD_0791	-	hypothetical protein
743	 39.40	0	811086..811958	+	290	116516105	-	SPD_0792	-	hypothetical protein
744	 33.94	-1	811971..812135	+	54	116515678	-	SPD_0793	-	hypothetical protein
745	 34.94	-1	812591..812902	+	103	116516083	-	SPD_0795	-	hypothetical protein
746	 34.73	-1	812906..813622	+	238	116517170	-	SPD_0796	-	hypothetical protein
747	 40.69	0	813752..814567	-	271	116516749	-	SPD_0797	-	hypothetical protein
40.03	MEAN

4.59	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.