IslandPath Analysis: Streptococcus pneumoniae D39



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.03   STD DEV: 4.59
Streptococcus pneumoniae D39, complete genome - 1..2046115
1914 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
21	 43.78	0	27184..27681	+	165	116515462	-	SPD_0030	-	hypothetical protein
22	 37.27	0	27706..28365	+	219	116516295	-	SPD_0031	-	hypothetical protein
23	 39.39	0	28358..28489	+	43	116515789	-	SPD_0032	-	hypothetical protein
24	 41.90	0	28634..29602	+	322	116516609	prsA	SPD_0033	-	ribose-phosphate pyrophosphokinase
25	 44.02	0	30143..30376	-	77	116516818	-	SPD_0035	-	hypothetical protein
26	 49.57	+2	30369..30485	-	38	116516187	-	SPD_0036	-	hypothetical protein
27	 39.83	0	30700..31053	-	117	116517001	-	SPD_0037	-	hypothetical protein
28	 43.93	0	31306..33939	+	877	116516654	-	SPD_0038	-	DNA polymerase I
29	 44.29	0	34024..34461	+	145	116515315	-	SPD_0039	-	hypothetical protein
30	 46.39	+1	34652..35662	-	336	116516491	-	SPD_0040	-	hypothetical protein
31	 45.98	+1	35811..36980	+	389	116516139	araT	SPD_0041	-	aromatic amino acid aminotransferase
32	 41.63	0	36977..37747	+	256	116517190	recO	SPD_0042	-	DNA repair protein RecO
33	 47.83	+1	37744..38736	+	330	116515915	plsX	SPD_0043	-	putative glycerol-3-phosphate acyltransferase PlsX
34	 38.89	0	38742..38975	+	77	116515605	-	SPD_0044	-	acyl carrier protein, putative
35	 46.75	+1	39514..39744	+	76	116516897	blpU	SPD_0046	-	bacteriocin BlpU
36	 22.22	-2	39747..39872	+	41	116515804	-	SPD_0047	-	hypothetical protein
37	 44.66	+1	41902..44055	+	717	116516510	comA	SPD_0049	-	competence factor transporting ATP-binding/permease protein ComA
38	 44.52	0	44068..45417	+	449	116515701	comB	SPD_0050	-	competence factor transport protein ComB
39	 40.25	0	45587..46294	+	235	116516190	purC	SPD_0051	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
40	 45.49	+1	46496..50221	+	1241	116516503	-	SPD_0052	-	phosphoribosylformylglycinamidine synthase, putative
41	 46.71	+1	50314..51756	+	480	116515944	purF	SPD_0053	-	amidophosphoribosyltransferase
42	 47.02	+1	51793..52815	+	340	116515735	purM	SPD_0054	-	phosphoribosylaminoimidazole synthetase
43	 47.07	+1	52812..53357	+	181	116515802	purN	SPD_0055	-	phosphoribosylglycinamide formyltransferase
44	 29.41	-2	53441..53950	+	169	116516890	-	SPD_0056	-	vanZ protein, putative
45	 48.00	+1	53975..55522	+	515	116516062	purH	SPD_0057	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
46	 47.51	+1	55644..56906	+	420	116517132	purD	SPD_0058	-	phosphoribosylamine--glycine ligase
47	 50.31	+2	57309..57797	+	162	116515776	purE	SPD_0059	-	phosphoribosylaminoimidazole carboxylase catalytic subunit
48	 47.71	+1	57784..58875	+	363	116516392	purK	SPD_0060	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
49	 35.96	0	58885..59112	+	75	116516948	-	SPD_0061	-	hypothetical protein
50	 46.34	+1	59175..60473	+	432	116516623	purB	SPD_0062	-	adenylosuccinate lyase
51	 42.12	0	60528..64466	-	1312	116517042	strH	SPD_0063	-	beta-N-acetylhexosaminidase
52	 37.50	0	64781..65524	-	247	116515951	-	SPD_0064	-	transcriptional regulator, GntR family protein
53	 41.89	0	65845..67632	+	595	116517213	bgaC	SPD_0065	-	Beta-galactosidase 3
54	 41.09	0	67629..68105	+	158	116516149	-	SPD_0066	-	PTS system, IIB component
55	 44.37	0	68133..69038	+	301	116515606	-	SPD_0067	-	PTS system, IIC component
56	 40.20	0	69025..69840	+	271	116515325	-	SPD_0068	-	PTS system, IID component
57	 43.95	0	69847..70251	+	134	116516395	-	SPD_0069	-	PTS system, IIA component
58	 42.25	0	70550..71716	+	388	116515512	agaS	SPD_0070	-	sugar isomerase domain-containing protein
59	 45.47	+1	71832..72869	+	345	116517175	galM	SPD_0071	-	aldose 1-epimerase
60	 44.33	0	73076..73930	+	284	116517115	-	SPD_0072	-	hypothetical protein
61	 39.53	0	74080..74337	+	85	116515835	-	SPD_0073	-	hypothetical protein
62	 48.63	+1	75312..76076	+	254	116516564	-	SPD_0074	-	phosphorylase, Pnp/Udp family protein, putative
63	 39.25	0	76332..76517	+	61	116516250	-	SPD_0075	-	hypothetical protein
64	 41.45	0	76686..78065	+	459	116516800	-	SPD_0076	-	potassium uptake protein, Trk family protein
65	 43.69	0	78079..78744	+	221	116515848	-	SPD_0077	-	potassium uptake protein, Trk family protein
66	 44.63	+1	79054..79593	+	179	116517146	-	SPD_0078	-	glycosyl transferase, group 2 family protein
67	 42.34	0	79660..80070	+	136	116516097	-	SPD_0079	-	hypothetical protein
68	 42.94	0	80186..83671	+	1161	116515436	-	SPD_0080	-	cell wall surface anchor family protein
69	 41.77	0	83838..84536	+	232	116516719	-	SPD_0081	-	DNA-binding response regulator
70	 43.97	0	84533..85585	+	350	116515418	-	SPD_0082	-	sensor histidine kinase
71	 43.63	0	85780..86391	+	203	116516581	rpsD	SPD_0083	-	30S ribosomal protein S4
72	 35.85	0	86577..86735	+	52	116515746	-	SPD_0084	-	IS630-Spn1, transposase Orf1
73	 29.79	-2	86833..86973	-	46	116516364	-	SPD_0085	-	hypothetical protein
74	 42.53	0	87053..87313	+	86	116516484	-	SPD_0086	-	hypothetical protein
75	 35.14	-1	87267..87488	+	73	116516464	-	SPD_0087	-	hypothetical protein
76	 41.29	0	87807..88736	+	309	116515415	-	SPD_0088	-	ABC transporter, permease protein
77	 42.21	0	88750..89673	+	307	116516742	-	SPD_0089	-	ABC transporter, permease protein
78	 38.48	0	89931..91406	+	491	116516928	-	SPD_0090	-	ABC transporter, substrate-binding protein
79	 44.48	0	91678..92664	+	328	116517133	-	SPD_0091	-	hypothetical protein
80	 41.11	0	92786..93646	+	286	116516138	-	SPD_0092	-	hypothetical protein
81	 40.00	0	93718..94782	-	354	116516874	-	SPD_0093	-	hypothetical protein
82	 40.90	0	94845..95756	-	303	116515571	-	SPD_0094	-	hypothetical protein
83	 43.94	0	95749..96342	-	197	116516361	-	SPD_0095	-	hypothetical protein
84	 42.20	0	96329..96655	-	108	116515726	-	SPD_0096	-	hypothetical protein
85	 44.82	+1	96794..97960	-	388	116515559	-	SPD_0097	-	transporter, putative
86	 33.33	-1	98018..99175	+	385	116516685	-	SPD_0098	-	glycosyl transferase, group 2 family protein
87	 42.19	0	99217..101067	+	616	116517199	capD	SPD_0099	-	capsular polysaccharide biosynthesis protein
88	 43.13	0	101463..102095	-	210	116515790	-	SPD_0101	-	hydrolase, haloacid dehalogenase-like family protein
89	 48.00	+1	102117..102989	-	290	116516525	sdhA	SPD_0102	-	L-serine dehydratase, iron-sulfur-dependent, alpha subunit
90	 41.67	0	102998..103669	-	223	116516124	sdhB	SPD_0103	-	L-serine dehydratase, iron-sulfur-dependent, beta subunit
91	 40.87	0	103911..104414	+	167	116516732	-	SPD_0104	-	LysM domain-containing protein
92	 38.55	0	104537..104785	-	82	116515849	-	SPD_0105	-	hypothetical protein
93	 39.36	0	105242..105490	+	82	116517179	-	SPD_0106	-	bacteriocin, putative
94	 37.89	0	105545..107653	+	702	116516371	-	SPD_0107	-	membrnae protein, putative
95	 40.81	0	107650..108291	+	213	116516985	-	SPD_0108	-	amino acid ABC transporter, ATP-binding protein, putative
96	 39.53	0	108497..109303	+	268	116516177	-	SPD_0109	-	amino acid ABC transporter, periplasmic amino acid-binding protein, putative
97	 41.77	0	109320..110516	+	398	116515666	argG	SPD_0110	-	argininosuccinate synthase
98	 40.95	0	110545..111936	+	463	116516947	argH	SPD_0111	-	argininosuccinate lyase
99	 37.73	0	112225..113088	-	287	116515314	-	SPD_0112	-	hypothetical protein
100	 29.91	-2	115766..116233	+	155	116516334	-	SPD_0114	-	hypothetical protein
101	 34.37	-1	116230..117582	+	450	116516521	-	SPD_0115	-	hypothetical protein
102	 39.63	0	117728..118108	+	126	116515891	-	SPD_0116	-	hypothetical protein
103	 40.86	0	119688..120059	+	123	116516318	-	SPD_0117	-	hypothetical protein
104	 37.30	0	120653..120778	+	41	116515720	-	SPD_0118	-	hypothetical protein
105	 29.93	-2	121084..122142	+	352	116515480	-	SPD_0119	-	hypothetical protein
106	 28.53	-2	122456..123433	+	325	116515901	-	SPD_0120	-	hypothetical protein
107	 40.27	0	123810..124184	+	124	116516556	-	SPD_0121	-	hypothetical protein
108	 29.90	-2	124392..125294	+	300	116515445	-	SPD_0122	-	hypothetical protein
109	 39.27	0	125350..125703	+	117	116516169	-	SPD_0123	-	hypothetical protein
110	 27.01	-2	125670..126428	+	252	116516163	-	SPD_0124	-	hypothetical protein
111	 28.05	-2	127557..127802	+	81	116516979	-	SPD_0125	-	hypothetical protein
112	 42.63	0	128356..130215	+	619	116515876	pspA	SPD_0126	-	pneumococcal surface protein A
113	 48.13	+1	130616..131737	+	373	116516757	trmU	SPD_0127	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
114	 44.30	0	131878..132333	+	151	116516444	-	SPD_0128	-	MutT/nudix family protein
115	 46.34	+1	132343..134256	+	637	116515312	gidA	SPD_0129	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
116	 46.49	+1	134636..136315	-	559	116516160	-	SPD_0130	-	metallo-beta-lactamase domain-containing protein
117	 43.16	0	136317..136550	-	77	116515572	-	SPD_0131	-	hypothetical protein
118	 35.29	-1	137368..137520	-	50	116516595	-	SPD_0132	-	hypothetical protein
119	 38.17	0	137522..137707	-	61	116516791	-	SPD_0133	-	hypothetical protein
120	 45.47	+1	137885..138568	+	227	116516776	-	SPD_0134	-	hypothetical protein
40.03	MEAN

4.59	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.