IslandPathversion 1.0

IslandPath Analysis: Streptococcus pneumoniae D39



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.03 STD DEV: 4.59
Streptococcus pneumoniae D39, complete genome - 1..2046115
1914 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
261	 35.63	0	274549..275985	+	478	116515365	celA	SPD_0277	-	6-phospho-beta-glucosidase
262	 31.25	-1	276037..276276	+	79	116515676	-	SPD_0278	-	hypothetical protein
263	 36.19	0	276406..276720	+	104	116517077	celB	SPD_0279	-	cellobiose phosphotransferase system IIB component
264	 31.41	-1	276844..278817	+	657	116516527	-	SPD_0280	-	transcriptional regulator, putative
265	 34.29	-1	278827..279141	+	104	116515730	celC	SPD_0281	-	cellobiose phosphotransferase system IIA component
266	 28.99	-2	279160..279666	+	168	116515501	-	SPD_0282	-	hypothetical protein
267	 37.94	0	279746..281092	+	448	116516546	celD	SPD_0283	-	cellobiose phosphotransferase system IIC component
268	 36.16	0	281474..281650	+	58	116515742	-	SPD_0284	-	hypothetical protein
269	 35.82	0	282052..284265	+	737	116516613	-	SPD_0285	-	glycosyl hydrolase, family protein 31
270	 42.77	0	284487..284963	-	158	116516850	-	SPD_0286	-	glutathione peroxidase
271	 40.14	0	285186..288389	+	1067	116515977	-	SPD_0287	-	hyaluronate lyase precursor
272	 45.08	+1	289533..290162	-	209	116515570	eda	SPD_0289	-	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase
273	 42.71	0	290172..291173	-	333	116516452	-	SPD_0290	-	carbohydrate kinase, PfkB family protein
274	 41.12	0	291204..291845	-	213	116515351	-	SPD_0291	-	hypothetical protein
275	 44.12	0	291864..292679	-	271	116516839	-	SPD_0292	-	gluconate 5-dehydrogenase
276	 39.08	0	292950..293384	+	144	116515558	-	SPD_0293	-	PTS system, IIA component
277	 41.06	0	293396..294586	+	396	116517086	-	SPD_0294	-	glucuronyl hydrolase
278	 40.85	0	294597..295088	+	163	116515823	-	SPD_0295	-	PTS system, IIB component
279	 41.67	0	295103..295882	+	259	116515404	-	SPD_0296	-	PTS system, IIC component
280	 39.07	0	295869..296687	+	272	116516087	-	SPD_0297	-	PTS system, IID component
281	 37.41	0	296687..296980	+	97	162139312	yajC-1	SPD_0298	-	preprotein translocase, YajC subunit
282	 36.75	0	297002..297118	+	38	116516830	-	SPD_0299	-	hypothetical protein
283	 40.46	0	297064..298902	+	612	116516834	-	SPD_0300	-	hypothetical protein
284	 39.82	0	298962..299963	+	333	116515692	regR	SPD_0301	-	sugar binding transcriptional regulator RegR
285	 32.10	-1	300409..300651	-	80	116516600	-	SPD_0302	-	hypothetical protein
286	 44.10	0	300667..300861	-	64	116515521	-	SPD_0303	-	transcriptional regulator, putative
287	 43.85	0	301027..301977	+	316	116515442	mraW	SPD_0304	-	S-adenosyl-methyltransferase MraW
288	 35.85	0	301989..302306	+	105	116516218	ftsL	SPD_0305	-	cell division protein FtsL
289	 42.57	0	302310..304562	+	750	116517037	pbpX	SPD_0306	-	penicillin-binding protein 2X
290	 41.28	0	304564..305544	+	326	116515948	mraY	SPD_0307	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
291	 43.21	0	306101..308206	+	701	116515968	clpL	SPD_0308	-	ATP-dependent Clp protease, ATP-binding subunit
292	 45.76	+1	308502..308984	-	160	116516199	luxS	SPD_0309	-	S-ribosylhomocysteinase
293	 43.84	0	309079..310563	-	494	116516184	-	SPD_0310	-	hypothetical protein
294	 42.48	0	310716..312323	+	535	116517011	dexB	SPD_0311	-	glucan 1,6-alpha-glucosidase
295	 37.36	0	312482..312655	+	57	116516728	-	SPD_0313	-	hypothetical protein
296	 38.45	0	313744..315189	+	481	116516963	cps2A	SPD_0315	-	integral membrane regulatory protein Cps2A
297	 41.53	0	315191..315922	+	243	116516159	cps2B	SPD_0316	-	tyrosine-protein phosphatase CpsB
298	 41.99	0	315931..316623	+	230	116517039	cps2C	SPD_0317	-	chain length determinant protein/polysaccharide export protein, MPA1 family protein
299	 39.06	0	316633..317313	+	226	116517023	cps2D	SPD_0318	-	tyrosine-protein kinase Cps2D cytosolic ATPase
300	 37.79	0	317328..318695	+	455	116516773	cps2E	SPD_0319	-	undecaprenylphosphate glucosephosphotransferase Cps2E
301	 40.25	0	318727..319911	+	394	116516453	cps2T	SPD_0320	-	glycosyl transferase, group 1 family protein, putative
302	 32.38	-1	319904..320848	+	314	116516251	cps2F	SPD_0321	-	glycosyl transferase, group 2 family protein
303	 32.66	-1	320864..321910	+	348	116516693	cps2G	SPD_0322	-	glycosyl transferase, group 1 family protein
304	 26.98	-2	321951..323114	+	387	116515655	csp2H	SPD_0323	-	polysaccharide polymerase
305	 29.53	-2	323244..324401	+	385	116516743	cps2I	SPD_0324	-	glycosyl transferase, group 1 family protein, putative
306	 26.38	-2	324398..325807	+	469	116516835	-	SPD_0325	-	hypothetical protein
307	 36.56	0	325843..327081	+	412	116516033	cps2K	SPD_0326	-	UDP-glucose 6-dehydrogenase, putative
308	 37.29	0	327110..327715	+	201	116517147	cps2P	SPD_0327	-	UDP-galactopyranose mutase
309	 42.87	0	327793..328662	+	289	116516051	cps2L	SPD_0328	-	glucose-1-phosphate thymidylyltransferase
310	 41.41	0	328663..329256	+	197	116517185	rfbC	SPD_0329	-	dTDP-4-dehydrorhamnose 3,5-epimerase, putative
311	 42.29	0	329269..330318	+	349	116516812	rfbB	SPD_0330	-	dTDP-glucose 4,6-dehydratase
312	 41.31	0	330384..331235	+	283	116515912	rfbD	SPD_0331	-	dTDP-4-dehydrorhamnose reductase
313	 35.22	-1	332280..332438	+	52	116517053	-	SPD_0333	-	hypothetical protein
314	 39.79	0	332640..334622	+	660	116515982	aliA	SPD_0334	-	oligopeptide ABC transporter, oligopeptide-binding protein AliA
315	 42.70	0	334922..340225	+	1767	116515461	-	SPD_0335	-	cell wall surface anchor family protein
316	 43.19	0	340392..342551	-	719	116516330	pbp1A	SPD_0336	-	penicillin-binding protein 1A
317	 37.52	0	342548..343144	-	198	116515550	recU	SPD_0337	-	Holliday junction-specific endonuclease
318	 35.98	0	343210..343737	+	175	116516898	-	SPD_0338	-	hypothetical protein
319	 36.06	0	343807..344136	+	109	116515799	-	SPD_0339	-	hypothetical protein
320	 44.04	0	344622..345779	+	385	116517216	-	SPD_0341	-	hypothetical protein
321	 40.50	0	345792..347186	+	464	116516323	-	SPD_0342	-	hypothetical protein
322	 43.02	0	347262..348686	+	474	116515453	gnd	SPD_0343	-	6-phosphogluconate dehydrogenase
323	 42.17	0	348698..349387	+	229	116516655	-	SPD_0344	-	DNA-binding response regulator
324	 36.97	0	349485..350501	+	338	116515498	cbpC	SPD_0345	-	choline binding protein C
325	 45.96	+1	350623..351501	+	292	116516899	mvk	SPD_0346	-	mevalonate kinase
326	 43.71	0	351483..352436	+	317	116515775	mvaD	SPD_0347	-	diphosphomevalonate decarboxylase
327	 43.45	0	352423..353430	+	335	116517118	mvaK2	SPD_0348	-	phosphomevalonate kinase
328	 44.02	0	353414..354424	+	336	116515768	fni	SPD_0349	-	isopentenyl pyrophosphate isomerase
329	 39.20	0	354502..355200	+	232	116516981	-	SPD_0350	-	hypothetical protein
330	 43.17	0	355197..356192	+	331	116515827	-	SPD_0351	-	sensor histidine kinase, putative
331	 46.76	+1	356206..356838	+	210	116517140	-	SPD_0352	-	DNA-binding response regulator
332	 36.73	0	356839..356985	+	48	116516086	-	SPD_0353	-	hypothetical protein
333	 33.85	-1	357758..357952	+	64	116516504	-	SPD_0355	-	hypothetical protein
334	 40.56	0	358922..359806	+	294	116515867	cbpF	SPD_0357	-	choline binding protein F
335	 27.23	-2	360868..361080	-	70	116516093	-	SPD_0359	-	hypothetical protein
336	 40.79	0	361289..363058	+	589	116515741	mtlA	SPD_0360	-	PTS system, mannitol-specific IIBC components
337	 35.33	-1	363082..365037	+	651	116516824	-	SPD_0361	-	transcriptional regulator, putative
338	 36.07	0	365039..365476	+	145	116515528	mtlA2	SPD_0362	-	PTS system, mannitol-specific enzyme IIA
339	 36.85	0	365538..366674	+	378	116516528	-	SPD_0363	-	mannitol-1-phosphate 5-dehydrogenase
340	 35.96	0	367056..367169	+	37	116516231	-	SPD_0364	-	ABC-type polar amino acid transport system, ATPase component
341	 41.04	0	367473..368756	+	427	116516755	tig	SPD_0365	-	trigger factor
342	 44.66	+1	368804..371170	-	788	116515818	-	SPD_0366	-	helicase, RecD/TraA family protein
343	 43.41	0	371404..372018	-	204	116515681	lepB	SPD_0367	-	signal peptidase I
344	 45.02	+1	372030..372902	-	290	116516121	rnhC	SPD_0368	-	ribonuclease HIII
345	 38.78	0	372980..373291	+	103	116516919	-	SPD_0369	-	hypothetical protein
346	 42.44	0	373288..373836	+	182	116515394	-	SPD_0370	-	hypothetical protein
347	 45.19	+1	373940..376276	+	778	116517220	-	SPD_0371	-	MutS2 family protein
348	 45.43	+1	376618..377940	+	440	116515323	-	SPD_0372	-	sodium:alanine symporter family protein
349	 43.53	0	378158..378706	+	182	116516508	-	SPD_0373	-	hypothetical protein
350	 42.00	0	378816..379715	+	299	116516614	-	SPD_0374	-	exfoliative toxin, putative
351	 44.16	0	379740..381014	-	424	116516325	serS	SPD_0375	-	seryl-tRNA synthetase
352	 41.94	0	381227..381598	-	123	116516387	-	SPD_0376	-	hypothetical protein
353	 42.64	0	381601..382965	-	454	116515794	-	SPD_0377	-	aspartate kinase
354	 43.13	0	383290..384075	+	261	116516619	-	SPD_0378	-	enoyl-CoA hydratase
355	 39.54	0	384169..384603	+	144	116516027	-	SPD_0379	-	transcriptional regulator, MarR family protein
356	 43.18	0	384603..385577	+	324	116516000	fabH	SPD_0380	-	3-oxoacyl-(acyl carrier protein) synthase III
357	 35.56	0	385637..385861	+	74	116516846	acpP	SPD_0381	-	acyl carrier protein
358	 44.10	0	385980..386954	+	324	116516513	fabK	SPD_0382	-	trans-2-enoyl-ACP reductase II
359	 45.71	+1	386947..387867	+	306	116517048	fabD	SPD_0383	-	acyl-carrier-protein S-malonyltransferase
360	 41.80	0	387901..388632	+	243	116515382	fabG	SPD_0384	-	3-ketoacyl-(acyl-carrier-protein) reductase
40.03	MEAN

4.59	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.