IslandPath Analysis: Streptococcus pneumoniae D39



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.03   STD DEV: 4.59
Streptococcus pneumoniae D39, complete genome - 1..2046115
1914 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
184	 42.97	0	199251..199904	+	217	116515402	rpsC	SPD_0199	-	30S ribosomal protein S3
185	 44.44	0	199908..200321	+	137	116515627	rplP	SPD_0200	-	50S ribosomal protein L16
186	 35.27	-1	200331..200537	+	68	116516938	rpmC	SPD_0201	-	50S ribosomal protein L29
187	 38.70	0	200562..200822	+	86	116515855	rpsQ	SPD_0202	-	30S ribosomal protein S17
188	 44.17	0	200848..201216	+	122	116517026	rplN	SPD_0203	-	50S ribosomal protein L14
189	 39.54	0	201294..201599	+	101	116516050	rplX	SPD_0204	-	50S ribosomal protein L24
190	 40.70	0	201623..202165	+	180	116515434	rplE	SPD_0205	-	50S ribosomal protein L5
191	 44.07	0	202183..202452	+	89	116516311	rpsN	SPD_0206	-	30S ribosomal protein S14
192	 39.10	0	202737..203135	+	132	116515705	rpsH	SPD_0207	-	30S ribosomal protein S8
193	 40.41	0	203327..203863	+	178	116516940	rplF	SPD_0208	-	50S ribosomal protein L6
194	 45.66	+1	203947..204303	+	118	116515871	rplR	SPD_0209	-	50S ribosomal protein L18
195	 43.03	0	204321..204815	+	164	116515495	rpsE	SPD_0210	-	30S ribosomal protein S5
196	 37.16	0	204829..205011	+	60	116516736	rpmD	SPD_0211	-	50S ribosomal protein L30
197	 41.50	0	205156..205596	+	146	116515385	rplO	SPD_0212	-	50S ribosomal protein L15
198	 38.90	0	205609..206919	+	436	116516915	secY	SPD_0213	-	preprotein translocase subunit SecY
199	 39.44	0	207070..207708	+	212	116515877	adk	SPD_0214	-	adenylate kinase
200	 37.44	0	207825..208043	+	72	116517117	infA	SPD_0215	-	translation initiation factor IF-1
201	 41.80	0	208202..208567	+	121	116516047	rpsM	SPD_0216	-	30S ribosomal protein S13
202	 43.75	0	208585..208968	+	127	116515441	rpsK	SPD_0217	-	30S ribosomal protein S11
203	 37.93	0	209011..209946	+	311	116516293	rpoA	SPD_0218	-	DNA-directed RNA polymerase subunit alpha
204	 41.60	0	209958..210344	+	128	116515447	rplQ	SPD_0219	-	50S ribosomal protein L17
205	 32.21	-1	210609..210875	+	88	116516644	-	SPD_0220	-	hypothetical protein
206	 45.60	+1	212467..213159	+	230	116516487	-	SPD_0222	-	phosphoglycerate mutase family protein
207	 37.46	0	213262..214254	-	330	116515628	-	SPD_0223	-	iron(III) ABC transporter, permease protein
208	 39.23	0	214281..214907	-	208	116516726	-	SPD_0224	-	iron(III) ABC transporter, permease protein
209	 40.75	0	214897..215988	-	363	116516814	-	SPD_0225	-	ABC transporter, ATP-binding protein
210	 33.06	-1	216001..216369	-	122	116515816	-	SPD_0226	-	iron ABC transporter, iron-binding protein
211	 37.44	0	216514..216708	-	64	116516973	-	SPD_0227	-	iron(III) ABC transporter, iron-binding protein
212	 33.33	-1	217340..217537	-	65	116516144	-	SPD_0228	-	transcriptional regulator, AraC family protein
213	 30.76	-2	217612..218388	-	258	116517186	-	SPD_0229	-	glycyl-radical enzyme activating protein family protein
214	 31.59	-1	218510..219256	+	248	116516292	-	SPD_0230	-	transcriptional regulator, DeoR family protein
215	 30.48	-2	219269..220249	+	326	116517202	-	SPD_0231	-	transcriptional activator
216	 32.40	-1	220444..220764	+	106	116516692	-	SPD_0232	-	PTS system, IIA component
217	 36.89	0	220810..221118	+	102	116515458	-	SPD_0233	-	PTS system, IIB component
218	 35.95	0	221135..222433	+	432	116516696	-	SPD_0234	-	PTS system, IIC component
219	 36.29	0	222584..225022	+	812	116515577	pfl	SPD_0235	-	pyruvate formate-lyase
220	 36.77	0	225041..225709	+	222	116516937	talC	SPD_0236	-	fructose-6-phosphate aldolase
221	 36.55	0	225727..226815	+	362	116515896	gldA	SPD_0237	-	glycerol dehydrogenase
222	 44.60	0	227270..229771	+	833	116517205	leuS	SPD_0238	-	leucyl-tRNA synthetase
223	 44.68	+1	229965..230660	+	231	116515892	-	SPD_0239	-	acetyltransferase, GNAT family protein
224	 39.57	0	230672..231088	+	138	116517164	-	SPD_0240	-	acetyltransferase, GNAT family protein
225	 45.75	+1	232129..233127	+	332	116515806	ruvB	SPD_0241	-	Holliday junction DNA helicase B
226	 37.17	0	233108..233680	+	190	116516380	-	SPD_0242	-	hypothetical protein
227	 44.01	0	233911..234669	+	252	116515541	uppS	SPD_0243	-	undecaprenyl diphosphate synthase
228	 41.67	0	234678..235481	+	267	116516628	cdsA	SPD_0244	-	phosphatidate cytidylyltransferase
229	 42.54	0	235503..236762	+	419	116515700	eep	SPD_0245	-	zinc metalloprotease Eep
230	 43.04	0	236775..238628	+	617	116515963	proS	SPD_0246	-	prolyl-tRNA synthetase
231	 42.97	0	238728..240107	+	459	116516550	-	SPD_0247	-	glycosyl hydrolase, family protein 1
232	 44.50	0	240299..242107	+	602	116516194	glmS	SPD_0248	-	D-fructose-6-phosphate amidotransferase
233	 46.19	+1	242226..243275	+	349	116515457	-	SPD_0249	-	hypothetical protein
234	 43.12	0	243375..247145	-	1256	116515399	-	SPD_0250	-	pullulanase, extracellular
235	 43.24	0	247562..247975	+	137	116516309	rpsL	SPD_0251	-	30S ribosomal protein S12
236	 44.37	0	247995..248465	+	156	116516917	rpsG	SPD_0252	-	30S ribosomal protein S7
237	 43.28	0	248890..250971	+	693	116516752	fusA	SPD_0253	-	elongation factor G
238	 44.47	0	251075..255466	+	1463	116515846	polC	SPD_0254	-	DNA polymerase III PolC
239	 39.77	0	255568..255831	+	87	116516886	-	SPD_0255	-	hypothetical protein
240	 35.84	0	255824..256102	+	92	116516116	-	SPD_0256	-	hypothetical protein
241	 35.29	-1	256123..256275	+	50	116516451	-	SPD_0257	-	hypothetical protein
242	 46.62	+1	256297..257538	+	413	116516652	pepS	SPD_0258	-	aminopeptidase PepS
243	 43.72	0	257548..257778	+	76	116516350	-	SPD_0259	-	hypothetical protein
244	 44.67	+1	258091..258813	+	240	116516048	rsuA-1	SPD_0260	-	ribosomal small subunit pseudouridine synthase A
245	 43.67	0	259030..260364	+	444	116516913	pepC	SPD_0261	-	aminopeptidase C
246	 41.12	0	260420..261331	-	303	116516955	-	SPD_0262	-	PTS system, mannose/fructose/sorbose family protein, IID component
247	 47.64	+1	261355..262158	-	267	116515863	manM	SPD_0263	-	PTS system, mannose-specific IIC component
248	 42.63	0	262186..263175	-	329	116515792	manL	SPD_0264	-	PTS system, mannose-specific IIAB components
249	 45.98	+1	263408..264427	-	339	116516519	-	SPD_0265	-	alcohol dehydrogenase
250	 40.47	0	264766..265578	-	270	116516403	-	SPD_0266	-	Cof family protein
251	 41.58	0	265768..267186	+	472	116515488	-	SPD_0267	-	xanthine/uracil permease family protein
252	 39.11	0	267255..267947	+	230	116516578	-	SPD_0268	-	hypothetical protein
253	 46.26	+1	268042..269016	+	324	116516653	folP	SPD_0269	-	dihydropteroate synthase
254	 46.11	+1	269018..270340	+	440	116516745	-	SPD_0270	-	folylpolyglutamate synthase
255	 43.06	0	270321..270875	+	184	116515945	folE	SPD_0271	-	GTP cyclohydrolase I
256	 45.02	+1	270918..271730	+	270	116517074	sulD	SPD_0272	-	bifunctional folate synthesis protein
257	 37.90	0	271775..272146	-	123	116516191	-	SPD_0273	-	hypothetical protein
258	 39.82	0	272449..272895	+	148	116516171	rplM	SPD_0274	-	50S ribosomal protein L13
259	 45.04	+1	272915..273307	+	130	116517105	rpsI	SPD_0275	-	30S ribosomal protein S9
260	 31.97	-1	273994..274359	+	121	116516562	-	SPD_0276	-	hypothetical protein
261	 35.63	0	274549..275985	+	478	116515365	celA	SPD_0277	-	6-phospho-beta-glucosidase
262	 31.25	-1	276037..276276	+	79	116515676	-	SPD_0278	-	hypothetical protein
263	 36.19	0	276406..276720	+	104	116517077	celB	SPD_0279	-	cellobiose phosphotransferase system IIB component
264	 31.41	-1	276844..278817	+	657	116516527	-	SPD_0280	-	transcriptional regulator, putative
265	 34.29	-1	278827..279141	+	104	116515730	celC	SPD_0281	-	cellobiose phosphotransferase system IIA component
266	 28.99	-2	279160..279666	+	168	116515501	-	SPD_0282	-	hypothetical protein
267	 37.94	0	279746..281092	+	448	116516546	celD	SPD_0283	-	cellobiose phosphotransferase system IIC component
268	 36.16	0	281474..281650	+	58	116515742	-	SPD_0284	-	hypothetical protein
269	 35.82	0	282052..284265	+	737	116516613	-	SPD_0285	-	glycosyl hydrolase, family protein 31
270	 42.77	0	284487..284963	-	158	116516850	-	SPD_0286	-	glutathione peroxidase
271	 40.14	0	285186..288389	+	1067	116515977	-	SPD_0287	-	hyaluronate lyase precursor
272	 45.08	+1	289533..290162	-	209	116515570	eda	SPD_0289	-	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase
273	 42.71	0	290172..291173	-	333	116516452	-	SPD_0290	-	carbohydrate kinase, PfkB family protein
274	 41.12	0	291204..291845	-	213	116515351	-	SPD_0291	-	hypothetical protein
275	 44.12	0	291864..292679	-	271	116516839	-	SPD_0292	-	gluconate 5-dehydrogenase
276	 39.08	0	292950..293384	+	144	116515558	-	SPD_0293	-	PTS system, IIA component
277	 41.06	0	293396..294586	+	396	116517086	-	SPD_0294	-	glucuronyl hydrolase
278	 40.85	0	294597..295088	+	163	116515823	-	SPD_0295	-	PTS system, IIB component
279	 41.67	0	295103..295882	+	259	116515404	-	SPD_0296	-	PTS system, IIC component
280	 39.07	0	295869..296687	+	272	116516087	-	SPD_0297	-	PTS system, IID component
281	 37.41	0	296687..296980	+	97	162139312	yajC-1	SPD_0298	-	preprotein translocase, YajC subunit
282	 36.75	0	297002..297118	+	38	116516830	-	SPD_0299	-	hypothetical protein
283	 40.46	0	297064..298902	+	612	116516834	-	SPD_0300	-	hypothetical protein
40.03	MEAN

4.59	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.