IslandPathversion 1.0

IslandPath Analysis: Streptococcus pneumoniae D39



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.03 STD DEV: 4.59
Streptococcus pneumoniae D39, complete genome - 1..2046115
1914 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1618	 40.39	0	1723286..1723894	-	202	116515483	-	SPD_1728	-	hypothetical protein
1619	 41.39	0	1723907..1724365	-	152	116515874	-	SPD_1729	-	hypothetical protein
1620	 37.16	0	1725654..1725914	-	86	116516597	-	SPD_1731	-	hypothetical protein
1621	 34.78	-1	1725973..1726524	-	183	116516601	-	SPD_1732	-	hypothetical protein
1622	 32.83	-1	1726514..1726711	-	65	116516964	-	SPD_1733	-	hypothetical protein
1623	 33.84	-1	1726715..1727509	-	264	116517008	-	SPD_1734	-	hypothetical protein
1624	 33.10	-1	1727917..1728342	-	141	116516198	-	SPD_1735	-	hypothetical protein
1625	 32.78	-1	1728471..1728830	-	119	116516167	-	SPD_1736	-	hypothetical protein
1626	 46.39	+1	1729601..1730557	-	318	116516777	lytA	SPD_1737	-	autolysin/N-acetylmuramoyl-L-alanine amidase
1627	 41.72	0	1730933..1732303	-	456	116517012	dinF	SPD_1738	-	MATE efflux family protein DinF
1628	 41.82	0	1732610..1733776	-	388	116516275	recA	SPD_1739	-	recombinase A
1629	 45.03	+1	1733831..1735087	-	418	116515783	cinA	SPD_1740	-	competence damage-inducible protein A
1630	 38.35	0	1735172..1736188	-	338	116516376	-	SPD_1741	-	transcriptional regulator, putative
1631	 41.43	0	1736196..1736714	-	172	116516759	-	SPD_1742	-	acetyltransferase, GNAT family protein
1632	 39.86	0	1736704..1737147	-	147	116515913	-	SPD_1743	-	hypothetical protein
1633	 35.27	-1	1737233..1737853	-	206	116516234	-	SPD_1744	-	hypothetical protein
1634	 33.10	-1	1738236..1739099	-	287	116517204	-	SPD_1745	-	transcriptional regulator PlcR, putative
1635	 32.75	-1	1739291..1739461	+	56	116516150	-	SPD_1746	-	hypothetical protein
1636	 38.22	0	1739564..1739788	+	74	116516307	-	SPD_1747	-	hypothetical protein
1637	 34.39	-1	1739795..1739983	+	62	116515563	-	SPD_1748	-	hypothetical protein
1638	 29.09	-2	1740099..1743089	+	996	116516640	-	SPD_1749	-	bacteriocin formation protein, putative
1639	 31.06	-1	1743439..1744143	+	234	116516852	wrbA	SPD_1750	-	hypothetical protein
1640	 27.10	-2	1744124..1745053	+	309	116516025	-	SPD_1751	-	hypothetical protein
1641	 28.31	-2	1745050..1747158	+	702	116516806	-	SPD_1752	-	toxin secretion ABC transporter, ATP-binding/permease protein
1642	 29.48	-2	1747182..1748921	+	579	116515961	-	SPD_1753	-	serine protease, subtilase family protein
1643	 39.58	0	1748972..1749739	+	255	116517021	-	SPD_1754	-	hypothetical protein
1644	 40.60	0	1749741..1750373	+	210	116516211	-	SPD_1755	-	ABC transporter, ATP-binding protein
1645	 28.40	-2	1750531..1750692	+	53	116516632	-	SPD_1756	-	hypothetical protein
1646	 42.03	0	1751319..1751732	-	137	116516942	ndk	SPD_1757	-	nucleoside diphosphate kinase
1647	 46.17	+1	1751843..1755520	-	1225	116515724	rpoC	SPD_1758	-	DNA-directed RNA polymerase subunit beta'
1648	 44.60	0	1755553..1759164	-	1203	116516435	rpoB	SPD_1759	-	DNA-directed RNA polymerase subunit beta
1649	 40.17	0	1759848..1761179	-	443	116515537	-	SPD_1761	-	CBS domain-containing protein
1650	 43.64	0	1761408..1762232	-	274	116516431	-	SPD_1762	-	DNA-entry nuclease
1651	 38.65	0	1762271..1762477	-	68	116516278	-	SPD_1763	-	hypothetical protein
1652	 46.81	+1	1762452..1763735	-	427	116516843	murA-2	SPD_1764	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
1653	 41.71	0	1764047..1765084	-	345	116516010	-	SPD_1765	-	hypothetical protein
1654	 39.47	0	1765068..1765556	-	162	116515643	coaD	SPD_1766	-	phosphopantetheine adenylyltransferase
1655	 45.00	+1	1765546..1766085	-	179	116516705	-	SPD_1767	-	type II DNA modification methyltransferase, putative
1656	 43.40	0	1766150..1767142	-	330	116515784	asnA	SPD_1768	-	asparagine synthetase AsnA
1657	 28.93	-2	1767122..1767280	+	52	116515931	-	SPD_1770	-	hypothetical protein
1658	 42.80	0	1767254..1767961	-	235	116516865	-	SPD_1769	-	hypothetical protein
1659	 42.11	0	1767993..1768733	-	246	116516909	-	SPD_1771	-	SpoU rRNA methylase family protein
1660	 43.56	0	1768782..1769045	+	87	116516230	-	SPD_1772	-	acylphosphatase, putative
1661	 44.23	0	1769123..1770049	+	308	116517062	-	SPD_1773	-	OxaA-like protein precursor
1662	 44.15	0	1770124..1770918	-	264	116516256	pflA	SPD_1774	-	pyruvate formate-lyase activating enzyme
1663	 45.16	+1	1771044..1772294	-	416	116516303	lysA	SPD_1775	-	diaminopimelate decarboxylase
1664	 42.27	0	1772361..1773188	-	275	116515481	purR	SPD_1776	-	purine operon repressor
1665	 44.76	+1	1773455..1774408	-	317	116516594	cbf1	SPD_1777	-	cmp-binding-factor 1
1666	 45.74	+1	1774386..1775642	-	418	116516808	-	SPD_1778	-	hypothetical protein
1667	 45.10	+1	1775644..1776306	-	220	116516589	-	SPD_1779	-	hypothetical protein
1668	 44.90	+1	1776269..1776925	-	218	116515540	rpe	SPD_1780	-	ribulose-phosphate 3-epimerase
1669	 43.57	0	1776936..1777814	-	292	116516502	rsgA	SPD_1781	-	ribosome-associated GTPase
1670	 46.39	+1	1777816..1778688	-	290	116515767	ksgA	SPD_1782	-	dimethyladenosine transferase
1671	 39.81	0	1778819..1779127	-	102	116517198	-	SPD_1783	-	hypothetical protein
1672	 39.41	0	1779120..1779761	-	213	116515516	-	SPD_1784	-	ABC transporter, ATP-binding protein
1673	 43.38	0	1779763..1781793	-	676	116516767	-	SPD_1785	-	immunity protein, putative
1674	 33.56	-1	1782062..1782961	-	299	116516188	-	SPD_1786	-	transcriptional regulator PlcR, putative
1675	 47.06	+1	1783033..1783593	-	186	116515737	-	SPD_1787	-	primase-related protein
1676	 45.48	+1	1783593..1784366	-	257	116516605	-	SPD_1788	-	hydrolase, TatD family protein
1677	 43.99	0	1784672..1785337	-	221	116516291	-	SPD_1789	-	cell wall surface anchor family protein
1678	 46.67	+1	1785600..1785734	-	44	116517079	rpmH	SPD_1790	-	50S ribosomal protein L34
1679	 44.61	0	1785879..1787093	-	404	116516203	-	SPD_1791	-	aminotransferase AlaT
1680	 33.67	-1	1787249..1787542	-	97	116516320	-	SPD_1792	-	hypothetical protein
1681	 46.14	+1	1787704..1788156	+	150	116515416	-	SPD_1793	-	universal stress protein family protein
1682	 43.77	0	1788191..1789579	-	462	116516548	-	SPD_1794	-	Cof family protein
1683	 45.79	+1	1789645..1790607	+	320	116515808	-	SPD_1796	-	L-asparaginase, putative
1684	 42.64	0	1790604..1790732	-	42	116515675	-	SPD_1795	-	hypothetical protein
1685	 40.75	0	1790859..1791869	-	336	116517109	ccpA	SPD_1797	-	catabolite control protein A
1686	 45.00	+1	1792294..1792893	-	199	116516134	-	SPD_1798	-	DNA-binding response regulator
1687	 38.52	0	1792895..1793992	-	365	116515432	-	SPD_1799	-	sensor histidine kinase, putative
1688	 39.43	0	1793992..1794729	-	245	116516402	-	SPD_1800	-	hypothetical protein
1689	 39.10	0	1794731..1795615	-	294	116516186	-	SPD_1801	-	ABC transporter, ATP-binding protein
1690	 41.54	0	1795602..1795796	-	64	116516158	-	SPD_1802	-	hypothetical protein
1691	 38.33	0	1795793..1795972	-	59	116515357	-	SPD_1803	-	hypothetical protein
1692	 37.29	0	1802678..1803157	-	159	116515760	comX2	SPD_1818	-	transcriptional regulator ComX2
1693	 33.89	-1	1803279..1803815	-	178	116515696	nusG	SPD_1819	-	transcription antitermination protein NusG
1694	 32.20	-1	1803870..1804046	-	58	116516864	secE	SPD_1820	-	preprotein translocase subunit SecE
1695	 41.39	0	1804261..1806456	-	731	116515999	pbp2A	SPD_1821	-	penicillin-binding protein 2A
1696	 39.61	0	1806543..1807418	+	291	116515727	-	SPD_1822	-	ribosomal large subunit pseudouridine synthase, RluD subfamily protein
1697	 42.36	0	1807486..1808493	-	335	116516442	gap	SPD_1823	-	glyceraldehyde-3-phosphate dehydrogenase
1698	 37.49	0	1808670..1809632	-	320	116515615	-	SPD_1824	-	hypothetical protein
1699	 41.92	0	1810656..1811528	-	290	116516875	nadC	SPD_1826	-	nicotinate-nucleotide pyrophosphorylase
1700	 43.71	0	1811765..1813075	+	436	116517036	-	SPD_1827	-	hypothetical protein
1701	 31.06	-1	1813441..1813572	-	43	116515923	-	SPD_1828	-	hypothetical protein
1702	 35.12	-1	1814095..1814823	-	242	116516507	-	SPD_1829	-	transcriptional regulator, GntR family protein
1703	 38.58	0	1814981..1816390	+	469	116515373	-	SPD_1830	-	glycosyl hydrolase, family protein 1
1704	 34.88	-1	1816408..1817703	+	431	116515645	-	SPD_1831	-	PTS system, IIC component
1705	 36.57	0	1817708..1818016	+	102	116515596	-	SPD_1832	-	PTS system, IIB component
1706	 36.25	0	1818013..1818321	+	102	116516943	-	SPD_1833	-	PTS system, IIA component
1707	 42.53	0	1819229..1821880	-	883	116515886	-	SPD_1834	-	bifunctional acetaldehyde-CoA/alcohol dehydrogenase
1708	 35.51	0	1822083..1822220	-	45	116517194	-	SPD_1835	-	hypothetical protein
1709	 38.69	0	1822180..1822590	-	136	116516602	-	SPD_1836	-	hypothetical protein
1710	 38.69	0	1822592..1823020	-	142	116517142	-	SPD_1837	-	phosphotyrosine protein phosphatase
1711	 36.00	0	1823067..1823366	-	99	116516333	yajC	SPD_1838	-	preprotein translocase subunit YajC
1712	 44.31	0	1823483..1825459	-	658	116515729	tkt	SPD_1839	-	transketolase
1713	 40.57	0	1825573..1826664	-	363	116516032	-	SPD_1840	-	putative L-ascorbate 6-phosphate lactonase
1714	 33.15	-1	1826776..1828449	-	557	116515617	-	SPD_1841	-	transcriptional regulator, BglG family protein
1715	 42.84	0	1828628..1829332	-	234	116515625	araD	SPD_1842	-	L-ribulose-5-phosphate 4-epimerase
1716	 40.16	0	1829334..1830197	-	287	116515477	-	SPD_1843	-	putative L-xylulose 5-phosphate 3-epimerase
1717	 43.39	0	1830201..1830866	-	221	116516297	ulaD	SPD_1844	-	3-keto-L-gulonate-6-phosphate decarboxylase
40.03	MEAN

4.59	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.