IslandPathversion 1.0

IslandPath Analysis: Streptococcus pneumoniae D39



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.03 STD DEV: 4.59
Streptococcus pneumoniae D39, complete genome - 1..2046115
1914 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1475	 44.61	0	1577554..1578147	-	197	116515369	-	SPD_1556	-	hypothetical protein
1476	 47.14	+1	1578147..1578776	-	209	116515834	nadD	SPD_1557	-	nicotinic acid mononucleotide adenylyltransferase
1477	 38.78	0	1578828..1579139	-	103	116515641	-	SPD_1558	-	hypothetical protein
1478	 44.35	0	1579354..1580460	-	368	116516270	-	SPD_1559	-	GTP-binding protein YqeH
1479	 44.51	0	1580463..1580990	-	175	116517207	-	SPD_1560	-	hypothetical protein
1480	 42.03	0	1581005..1581901	-	298	116516142	-	SPD_1561	-	magnesium transporter, CorA family protein, putative
1481	 38.69	0	1581958..1582554	-	198	116516950	-	SPD_1562	-	small conductance mechanosensitive ion channel (MscS) family protein
1482	 44.06	0	1582907..1583866	+	319	116516711	-	SPD_1563	-	dicarboxylate/amino acid:cation (Na+ or H+) symporter (DAACS) family protein
1483	 44.97	+1	1583934..1584887	+	317	116517163	-	SPD_1564	-	hypothetical protein
1484	 44.88	+1	1585031..1585411	+	126	116516515	-	SPD_1565	-	transcriptional regulator, putative
1485	 35.97	0	1585429..1585731	+	100	116515687	-	SPD_1566	-	hypothetical protein
1486	 40.00	0	1585748..1586062	+	104	116516780	trx	SPD_1567	-	thioredoxin
1487	 45.80	+1	1586556..1586900	+	114	116515904	-	SPD_1568	-	GTP cyclohydrolase, putative
1488	 45.14	+1	1587380..1588048	-	222	116515733	-	SPD_1569	-	aquaporin
1489	 36.58	0	1588159..1588713	-	184	116515449	-	SPD_1570	-	hypothetical protein
1490	 45.69	+1	1588959..1590755	-	598	116516584	-	SPD_1571	-	oligoendopeptidase F, putative
1491	 44.49	0	1590766..1591509	-	247	116515693	-	SPD_1572	-	hypothetical protein
1492	 48.37	+1	1591511..1592461	-	316	116516647	prmA	SPD_1573	-	ribosomal protein L11 methyltransferase
1493	 41.49	0	1592599..1593027	-	142	116515601	-	SPD_1574	-	MutT/nudix family protein
1494	 40.31	0	1592993..1594096	-	367	116517094	-	SPD_1575	-	hypothetical protein
1495	 41.19	0	1594115..1594585	-	156	116515833	-	SPD_1576	-	hypothetical protein
1496	 38.19	0	1594876..1595328	-	150	116515428	-	SPD_1577	-	hypothetical protein
1497	 32.78	-1	1595681..1595860	-	59	116516279	-	SPD_1578	-	hypothetical protein
1498	 29.58	-2	1596025..1596264	-	79	116515699	-	SPD_1579	-	hypothetical protein
1499	 48.19	+1	1596534..1597805	+	423	116516731	-	SPD_1580	-	recombination factor protein RarA
1500	 40.00	0	1598352..1599671	-	439	116517206	-	SPD_1582	-	sucrose-6-phosphate hydrolase, putative
1501	 34.16	-1	1599681..1600526	-	281	116516106	-	SPD_1583	-	ABC transporter, permease protein
1502	 33.33	-1	1600528..1601430	-	300	116515702	-	SPD_1584	-	ABC transporter, permease protein
1503	 35.62	0	1601526..1602836	-	436	116516945	-	SPD_1585	-	ABC transporter, sugar-binding protein
1504	 30.52	-2	1602963..1603958	-	331	116515545	-	SPD_1586	-	sugar-binding transcriptional regulator, LacI family protein
1505	 30.03	-2	1604320..1605801	-	493	116516300	-	SPD_1587	-	transcriptional activator, putative
1506	 31.75	-1	1606491..1607057	+	188	116516127	-	SPD_1588	-	hypothetical protein
1507	 33.92	-1	1607069..1607239	+	56	116515552	-	SPD_1589	-	hypothetical protein
1508	 36.45	0	1607278..1607886	+	202	116515908	-	SPD_1590	-	general stress protein 24, putative
1509	 36.76	0	1607917..1608120	+	67	116515903	-	SPD_1591	-	hypothetical protein
1510	 38.26	0	1608647..1609093	-	148	116516977	-	SPD_1592	-	acetyltransferase, GNAT family protein
1511	 44.85	+1	1609163..1609822	+	219	116516208	-	SPD_1593	-	type IV prepilin peptidase, putative
1512	 32.29	-1	1609874..1611025	-	383	116516126	-	SPD_1594	-	transcriptional regulator
1513	 31.97	-1	1611040..1611771	-	243	116517126	-	SPD_1595	-	hypothetical protein
1514	 45.30	+1	1612073..1612849	-	258	116515328	trpA	SPD_1596	-	tryptophan synthase subunit alpha
1515	 48.53	+1	1612842..1614065	-	407	116516622	trpB	SPD_1597	-	tryptophan synthase subunit beta
1516	 43.50	0	1614043..1614642	-	199	116515967	trpF	SPD_1598	-	N-(5'-phosphoribosyl)anthranilate isomerase
1517	 46.61	+1	1614629..1615396	-	255	116516838	trpC	SPD_1599	-	indole-3-glycerol-phosphate synthase
1518	 43.98	0	1615393..1616397	-	334	116516280	trpD	SPD_1600	-	anthranilate phosphoribosyltransferase
1519	 43.21	0	1616408..1616974	-	188	116516075	trpG	SPD_1601	-	anthranilate synthase component II
1520	 43.91	0	1616971..1618332	-	453	116516925	trpE	SPD_1602	-	anthranilate synthase component I
1521	 42.31	0	1618467..1618622	-	51	116515981	-	SPD_1603	-	hypothetical protein
1522	 41.67	0	1618626..1618745	-	39	116515832	-	SPD_1604	-	hypothetical protein
1523	 31.34	-1	1619519..1620520	-	333	116516729	-	SPD_1605	-	sugar-binding transcriptional regulator, LacI family protein
1524	 36.57	0	1621092..1621802	-	236	116515634	-	SPD_1606	-	MgtC/SapB family protein
1525	 32.74	-1	1621805..1623496	-	563	116516480	-	SPD_1607	-	ABC transporter, permease protein
1526	 33.04	-1	1623508..1624518	-	336	116516345	-	SPD_1608	-	ABC transporter ATP-binding protein
1527	 34.36	-1	1624621..1625688	-	355	116515427	-	SPD_1609	-	ABC transporter, substrate-binding protein
1528	 31.67	-1	1625713..1626372	-	219	116516088	-	SPD_1610	-	hypothetical protein
1529	 29.82	-2	1626500..1626613	-	37	116517152	-	SPD_1611	-	hypothetical protein
1530	 37.10	0	1626582..1627562	-	326	116515568	galE-2	SPD_1612	-	UDP-glucose 4-epimerase
1531	 33.94	-1	1627575..1629050	-	491	116516923	galT-1	SPD_1613	-	galactose-1-phosphate uridylyltransferase
1532	 25.23	-2	1629063..1629704	-	213	116516347	-	SPD_1614	-	phosphate transport system regulatory protein PhoU, putative
1533	 28.08	-2	1629762..1630256	-	164	116515595	-	SPD_1615	-	hypothetical protein
1534	 27.95	-2	1630317..1630613	-	98	116516072	-	SPD_1616	-	hypothetical protein
1535	 31.55	-1	1630597..1632723	-	708	116515361	-	SPD_1617	-	cell wall surface anchor family protein
1536	 35.03	-1	1633669..1633845	+	58	116517214	-	SPD_1618	-	hypothetical protein
1537	 44.09	0	1633887..1635113	-	408	116516120	-	SPD_1619	-	capsular polysaccharide biosynthesis protein, putative
1538	 45.60	+1	1635156..1635848	-	230	116516993	-	SPD_1620	-	glycosyl transferase, putative
1539	 44.46	0	1636021..1637772	-	583	116516065	-	SPD_1621	-	ABC transporter, ATP-binding/permease protein
1540	 45.76	+1	1637762..1639507	-	581	116515751	-	SPD_1622	-	ABC transporter, ATP-binding/permease protein
1541	 41.43	0	1639635..1640165	-	176	116515837	-	SPD_1623	-	hypothetical protein
1542	 39.26	0	1640162..1640431	-	89	116515487	-	SPD_1624	-	hypothetical protein
1543	 38.16	0	1640391..1640618	-	75	116516579	-	SPD_1625	-	hypothetical protein
1544	 45.29	+1	1640752..1641579	+	275	116516049	xth	SPD_1626	-	exodeoxyribonuclease III
1545	 44.16	0	1642851..1643432	+	193	116515812	xpt	SPD_1628	-	xanthine phosphoribosyltransferase
1546	 45.84	+1	1643432..1644694	+	420	116516978	pbuX	SPD_1629	-	xanthine permease
1547	 34.63	-1	1644745..1645206	-	153	116515864	-	SPD_1630	-	hypothetical protein
1548	 32.55	-1	1645203..1645967	-	254	116516583	-	SPD_1631	-	Dam-replacing family protein
1549	 42.96	0	1646148..1646552	-	134	116516006	-	SPD_1632	-	hypothetical protein
1550	 45.21	+1	1646622..1648103	-	493	116517165	galT-2	SPD_1633	-	galactose-1-phosphate uridylyltransferase
1551	 44.02	0	1648122..1649300	-	392	116516140	galK	SPD_1634	-	galactokinase
1552	 46.23	+1	1649464..1650471	+	335	116515548	galR	SPD_1635	-	galactose operon repressor
1553	 44.80	+1	1650517..1651554	-	345	116516381	-	SPD_1636	-	alcohol dehydrogenase, zinc-containing
1554	 39.27	0	1651555..1651908	-	117	116515738	-	SPD_1637	-	transcriptional regulator, MerR family protein
1555	 40.85	0	1652152..1653042	-	296	116516957	-	SPD_1638	-	cation efflux system protein
1556	 42.46	0	1653175..1653711	+	178	116516665	-	SPD_1639	-	transcriptional regulator, TetR family protein
1557	 41.88	0	1653878..1654684	-	268	116515309	pnuC	SPD_1640	-	nicotinamide mononucleotide transporter PnuC, putative
1558	 43.46	0	1656513..1658033	-	506	116516671	proWX	SPD_1642	-	choline transporter (glycine betaine transport system permease protein)
1559	 42.11	0	1658026..1658754	-	242	116515426	proV	SPD_1643	-	choline transporter
1560	 41.83	0	1658769..1659533	-	254	116516425	-	SPD_1644	-	hypothetical protein
1561	 40.32	0	1659537..1659980	-	147	116516067	-	SPD_1645	-	transcriptional regulator, MarR family protein
1562	 42.42	0	1660662..1660958	-	98	116516799	-	SPD_1646	-	hypothetical protein
1563	 46.01	+1	1660980..1662044	-	354	116516201	pepA	SPD_1647	-	glutamyl aminopeptidase PepA
1564	 40.74	0	1662445..1663146	+	233	116515575	-	SPD_1648	-	NAD-dependent epimerase/dehydratase family protein
1565	 46.04	+1	1663569..1664528	+	319	116515914	-	SPD_1649	-	iron-compound ABC transporter, permease protein
1566	 43.26	0	1664518..1665474	+	318	116517018	-	SPD_1650	-	iron-compound ABC transporter, permease protein
1567	 44.89	+1	1665471..1666223	+	250	116515957	-	SPD_1651	-	iron-compound ABC transporter, ATP-binding protein
1568	 42.65	0	1666319..1667284	+	321	116515347	-	SPD_1652	-	iron-compound ABC transporter, iron-compound-binding protein
1569	 43.62	0	1667509..1667751	-	80	116516197	-	SPD_1653	-	hypothetical protein
1570	 45.64	+1	1667751..1668473	-	240	116515785	rluB	SPD_1654	-	ribosomal large subunit pseudouridine synthase B
1571	 44.74	+1	1668460..1669029	-	189	116516630	scpB	SPD_1655	-	segregation and condensation protein B
1572	 45.40	+1	1669048..1669776	-	242	116516005	scpA	SPD_1656	-	segregation and condensation protein A
1573	 42.65	0	1669776..1670516	-	246	116517040	xerD	SPD_1657	-	site-specific tyrosine recombinase XerD-like protein
1574	 45.45	+1	1670507..1670968	-	153	116515694	-	SPD_1658	-	CBS domain-containing protein
40.03	MEAN

4.59	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.