IslandPathversion 1.0

IslandPath Analysis: Streptococcus pneumoniae D39



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.03 STD DEV: 4.59
Streptococcus pneumoniae D39, complete genome - 1..2046115
1914 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1381	 47.62	+1	1473683..1474312	+	209	116515803	-	SPD_1459	-	metallo-beta-lactamase superfamily protein
1382	 44.64	+1	1474435..1476327	-	630	116517102	pepO	SPD_1460	-	endopeptidase O
1383	 43.02	0	1476618..1477340	+	240	116515895	psaB	SPD_1461	-	manganese ABC transporter, ATP-binding protein
1384	 41.81	0	1477337..1478185	+	282	116516771	psaC	SPD_1462	-	manganese ABC transporter, permease protein, putative
1385	 37.10	0	1478217..1479146	+	309	116515973	-	SPD_1463	-	ABC transporter, substrate binding lipoprotein
1386	 43.50	0	1479269..1479760	+	163	116517151	tpx	SPD_1464	-	thiol peroxidase
1387	 43.71	0	1479856..1482564	-	902	116516046	-	SPD_1465	-	hypothetical protein
1388	 45.16	+1	1482566..1483267	-	233	116516416	-	SPD_1466	-	ABC transporter, ATP-binding protein
1389	 42.99	0	1483517..1485928	-	803	116515332	-	SPD_1467	-	hypothetical protein
1390	 41.99	0	1485981..1486673	-	230	116516661	-	SPD_1468	-	phosphoglyceromutase
1391	 29.10	-2	1486724..1486912	-	62	116515642	-	SPD_1469	-	hypothetical protein
1392	 38.30	0	1487288..1487428	-	46	116516001	-	SPD_1470	-	hypothetical protein
1393	 44.44	0	1487432..1487548	-	38	116517203	-	SPD_1471	-	hypothetical protein
1394	 42.68	0	1487996..1490788	-	930	116515942	ileS	SPD_1472	-	isoleucyl-tRNA synthetase
1395	 43.59	0	1491041..1491157	-	38	116516779	-	SPD_1473	-	hypothetical protein
1396	 39.92	0	1491136..1491924	-	262	116515933	divIVA	SPD_1474	-	cell division protein DivIVA
1397	 35.24	-1	1491933..1492718	-	261	116516882	ylmH	SPD_1475	-	YlmH protein
1398	 42.80	0	1492715..1492978	-	87	116516690	ylmG	SPD_1476	-	YlmG protein
1399	 37.96	0	1492978..1493517	-	179	116515526	ylmF	SPD_1477	-	YlmF protein
1400	 38.84	0	1493527..1494198	-	223	116516370	ylmE	SPD_1478	-	YlmE protein
1401	 44.52	0	1494203..1495462	-	419	116516283	ftsZ	SPD_1479	-	cell division protein FtsZ
1402	 43.09	0	1495479..1496852	-	457	116516996	ftsA	SPD_1480	-	cell division protein FtsA
1403	 39.01	0	1497071..1497775	-	234	116515691	-	SPD_1481	-	hypothetical protein
1404	 40.52	0	1497866..1498477	-	203	116516551	-	SPD_1482	-	MutT/nudix family protein
1405	 41.85	0	1498464..1499837	-	457	116515757	murF	SPD_1483	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase
1406	 44.92	+1	1499921..1500964	-	347	116516832	ddl	SPD_1484	-	D-alanyl-alanine synthetase A
1407	 44.05	0	1501140..1501736	-	198	116516007	recR	SPD_1485	-	recombination protein RecR
1408	 41.84	0	1501747..1503804	-	685	116517156	penA	SPD_1486	-	penicillin-binding protein 2B
1409	 40.96	0	1504004..1504855	+	283	116516240	-	SPD_1487	-	phosphosugar-binding transcriptional regulator, putative
1410	 43.39	0	1504871..1505755	-	294	116515474	-	SPD_1488	-	ROK family protein
1411	 43.17	0	1505773..1506504	-	243	116516552	-	SPD_1489	-	N-acetylneuraminate lyase, putative
1412	 40.65	0	1506873..1507337	-	154	116515320	-	SPD_1490	-	hypothetical protein
1413	 38.84	0	1507624..1507968	-	114	116515978	-	SPD_1491	-	hypothetical protein
1414	 37.75	0	1508065..1508517	-	150	116515454	-	SPD_1492	-	hypothetical protein
1415	 42.38	0	1508790..1509629	-	279	116516043	-	SPD_1493	-	sugar ABC transporter, permease protein
1416	 39.53	0	1509645..1510532	-	295	116516754	-	SPD_1494	-	sugar ABC transporter, permease protein
1417	 40.33	0	1510763..1512091	-	442	116515405	-	SPD_1495	-	sugar ABC transporter, sugar-binding protein
1418	 36.69	0	1512216..1513733	-	505	116516936	-	SPD_1496	-	PTS system, IIBC components
1419	 43.35	0	1513752..1514450	-	232	116515887	nanE-1	SPD_1497	-	N-acetylmannosamine-6-phosphate 2-epimerase
1420	 39.40	0	1514630..1515733	-	367	116516108	-	SPD_1498	-	putative oxidoreductase
1421	 33.38	-1	1515745..1517838	-	697	116516987	nanB	SPD_1499	-	sialidase B precursor
1422	 35.97	0	1517856..1518689	-	277	116516337	-	SPD_1500	-	ABC transporter, permease protein
1423	 37.06	0	1518689..1519573	-	294	116515660	-	SPD_1501	-	ABC transporter, permease protein
1424	 36.02	0	1519652..1520989	-	445	116516571	-	SPD_1502	-	ABC transporter, substrate-binding protein
1425	 35.10	-1	1521008..1521460	-	150	116515591	-	SPD_1503	-	hypothetical protein
1426	 42.79	0	1522475..1525468	-	997	116517141	nanA	SPD_1504	-	sialidase A precursor
1427	 30.26	-2	1525825..1526052	-	75	116515538	-	SPD_1505	-	hypothetical protein
1428	 44.85	+1	1526947..1527927	-	326	116516924	-	SPD_1506	-	acetyl xylan esterase, putative
1429	 46.73	+1	1528243..1530258	-	671	116516080	recG	SPD_1507	-	ATP-dependent DNA helicase RecG
1430	 46.01	+1	1530277..1531380	-	367	116515765	alr	SPD_1508	-	alanine racemase
1431	 46.83	+1	1531370..1531732	-	120	116515875	acpS	SPD_1509	-	4'-phosphopantetheinyl transferase
1432	 44.19	0	1531777..1532808	-	343	116516181	-	SPD_1510	-	phospho-2-dehydro-3-deoxyheptonate aldolase
1433	 40.99	0	1532810..1533841	-	343	116517167	-	SPD_1511	-	phospho-2-dehydro-3-deoxyheptonate aldolase
1434	 43.16	0	1533922..1536435	-	837	116515410	secA	SPD_1512	-	preprotein translocase subunit SecA
1435	 32.72	-1	1536881..1537531	-	216	116516316	-	SPD_1514	-	ABC transporter, ATP-binding protein
1436	 34.38	-1	1537535..1538110	-	191	116515682	-	SPD_1515	-	hypothetical protein
1437	 32.83	-1	1538169..1538960	-	263	116516608	-	SPD_1516	-	hypothetical protein
1438	 34.86	-1	1538982..1539374	-	130	116516969	-	SPD_1517	-	hypothetical protein
1439	 31.46	-1	1539701..1540552	+	283	116516974	-	SPD_1518	-	transcriptional activator, Rgg/GadR/MutR family protein
1440	 43.63	0	1541688..1542998	-	436	116515879	engA	SPD_1519	-	GTP-binding protein EngA
1441	 45.24	+1	1543012..1543725	-	237	116517075	-	SPD_1520	-	nitroreductase family protein
1442	 40.58	0	1543722..1544618	-	298	116516206	dnaI	SPD_1521	-	primosomal protein DnaI
1443	 40.77	0	1544619..1545788	-	389	116515470	-	SPD_1522	-	hypothetical protein
1444	 42.41	0	1545789..1546262	-	157	116516730	-	SPD_1523	-	transcriptional regulator NrdR
1445	 41.53	0	1546402..1546767	+	121	116516792	-	SPD_1524	-	transcriptional regulator, GntR family protein
1446	 42.39	0	1546772..1547467	+	231	116515972	-	SPD_1525	-	ABC transporter, ATP-binding protein
1447	 38.54	0	1547484..1548251	+	255	116515966	-	SPD_1526	-	hypothetical protein
1448	 39.58	0	1548664..1549863	-	399	116516998	-	SPD_1527	-	hypothetical protein
1449	 41.83	0	1549860..1550753	-	297	116516180	-	SPD_1528	-	ABC transporter, ATP-binding protein
1450	 46.44	+1	1552062..1552679	+	205	116515885	-	SPD_1530	-	hypothetical protein
1451	 44.14	0	1552999..1553886	-	295	116516735	scrK	SPD_1531	-	fructokinase
1452	 44.06	0	1554035..1555918	-	627	116517116	-	SPD_1532	-	PTS system IIABC components
1453	 26.77	-2	1556045..1556242	-	65	116515797	-	SPD_1533	-	hypothetical protein
1454	 42.68	0	1556295..1557749	+	484	116516412	scrB	SPD_1534	-	sucrose-6-phosphate hydrolase
1455	 42.44	0	1557730..1558695	+	321	116516061	scrR	SPD_1535	-	sucrose operon repressor
1456	 49.33	+2	1558730..1560004	-	424	116516718	-	SPD_1536	-	hydroxymethylglutaryl-CoA reductase, degradative
1457	 42.11	0	1560004..1561200	-	398	116515383	mvaS	SPD_1537	-	hydroxymethylglutaryl-CoA synthase
1458	 39.24	0	1561307..1561594	-	95	116515856	-	SPD_1538	-	hypothetical protein
1459	 41.78	0	1562311..1562760	-	149	116516534	-	SPD_1540	-	hypothetical protein
1460	 45.19	+1	1562762..1563520	-	252	116516263	-	SPD_1541	-	hypothetical protein
1461	 43.74	0	1563635..1565614	-	659	116517182	-	SPD_1542	-	serine/threonine protein kinase
1462	 42.38	0	1565611..1566351	-	246	116515932	-	SPD_1543	-	phosphatase, putative
1463	 44.37	0	1566366..1567679	-	437	116517030	sun	SPD_1544	-	ribosomal RNA small subunit methyltransferase B
1464	 45.94	+1	1567672..1568607	-	311	116515769	fmt	SPD_1545	-	methionyl-tRNA formyltransferase
1465	 46.56	+1	1568620..1571016	-	798	116516961	priA	SPD_1546	-	primosome assembly protein PriA
1466	 40.00	0	1571082..1571396	-	104	116515579	-	SPD_1547	-	DNA-directed RNA polymerase subunit omega
1467	 44.02	0	1571421..1572047	-	208	116516658	gmk	SPD_1548	-	guanylate kinase
1468	 44.42	0	1572177..1573790	-	537	116516869	-	SPD_1549	-	hypothetical protein
1469	 37.25	0	1573981..1574235	-	84	116515838	-	SPD_1550	-	hypothetical protein
1470	 41.76	0	1574239..1574499	-	86	116516949	-	SPD_1551	-	hypothetical protein
1471	 45.17	+1	1574731..1575828	-	365	116516082	-	SPD_1552	-	hypothetical protein
1472	 44.58	0	1575838..1576584	-	248	116517052	-	SPD_1553	-	hypothetical protein
1473	 44.92	+1	1576687..1577040	-	117	116515553	-	SPD_1554	-	iojap-related protein
1474	 35.33	-1	1577053..1577553	-	166	116516727	-	SPD_1555	-	isochorismatase family protein
1475	 44.61	0	1577554..1578147	-	197	116515369	-	SPD_1556	-	hypothetical protein
1476	 47.14	+1	1578147..1578776	-	209	116515834	nadD	SPD_1557	-	nicotinic acid mononucleotide adenylyltransferase
1477	 38.78	0	1578828..1579139	-	103	116515641	-	SPD_1558	-	hypothetical protein
1478	 44.35	0	1579354..1580460	-	368	116516270	-	SPD_1559	-	GTP-binding protein YqeH
1479	 44.51	0	1580463..1580990	-	175	116517207	-	SPD_1560	-	hypothetical protein
1480	 42.03	0	1581005..1581901	-	298	116516142	-	SPD_1561	-	magnesium transporter, CorA family protein, putative
40.03	MEAN

4.59	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.