IslandPathversion 1.0

IslandPath Analysis: Streptococcus pneumoniae D39



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.03 STD DEV: 4.59
Streptococcus pneumoniae D39, complete genome - 1..2046115
1914 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1267	 36.77	0	1354368..1354862	-	164	116515510	atpF	SPD_1339	-	F0F1 ATP synthase subunit B
1268	 35.84	0	1354876..1355592	-	238	116516382	atpB	SPD_1340	-	F0F1 ATP synthase subunit A
1269	 34.33	-1	1355627..1355827	-	66	116515363	atpE	SPD_1341	-	F0F1 ATP synthase subunit C
1270	 39.98	0	1355902..1356909	-	335	116516748	-	SPD_1342	-	IS1239, transposase, putative
1271	 36.36	0	1357354..1357782	-	142	116515322	-	SPD_1343	-	acetyltransferase, GNAT family protein
1272	 38.73	0	1357870..1358277	-	135	116516910	-	SPD_1344	-	hypothetical protein
1273	 42.03	0	1358305..1358787	-	160	116516490	greA	SPD_1345	-	transcription elongation factor GreA
1274	 41.24	0	1358858..1360513	-	551	116515658	-	SPD_1346	-	hypothetical protein
1275	 41.62	0	1360594..1361088	-	164	116516733	-	SPD_1347	-	acetyltransferase, GNAT family protein
1276	 41.51	0	1361085..1361549	-	154	116516267	-	SPD_1348	-	acetyltransferase, GNAT family protein
1277	 41.50	0	1361559..1362893	-	444	116515384	murC	SPD_1349	-	UDP-N-acetylmuramate--L-alanine ligase
1278	 40.45	0	1362904..1363521	-	205	116516012	-	SPD_1350	-	hypothetical protein
1279	 44.08	0	1363569..1366667	-	1032	116516877	-	SPD_1351	-	Snf2 family protein
1280	 41.65	0	1366760..1367926	-	388	116517089	-	SPD_1352	-	aminotransferase, class II
1281	 44.47	0	1367934..1369028	-	364	116515921	-	SPD_1353	-	cystathionine gamma-synthase
1282	 39.87	0	1369186..1369338	-	50	116515397	-	SPD_1354	-	hypothetical protein
1283	 37.53	0	1369457..1369909	-	150	116516505	-	SPD_1355	-	hypothetical protein
1284	 38.44	0	1371041..1372999	-	652	116516101	aliB	SPD_1357	-	oligopeptide ABC transporter, oligopeptide-binding protein AliB
1285	 44.18	0	1373202..1374824	-	540	116517110	-	SPD_1358	-	polysaccharide biosynthesis protein, putative
1286	 42.67	0	1374930..1376375	+	481	116516282	murE	SPD_1359	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
1287	 39.49	0	1376421..1376615	-	64	116516418	-	SPD_1360	-	hypothetical protein
1288	 42.50	0	1377348..1377860	-	170	116515986	-	SPD_1362	-	hypothetical protein
1289	 42.74	0	1377947..1378882	-	311	116516825	ppaC	SPD_1363	-	putative manganese-dependent inorganic pyrophosphatase
1290	 42.00	0	1378953..1379252	-	99	116515348	-	SPD_1364	-	hypothetical protein
1291	 41.60	0	1379242..1379991	-	249	116516448	-	SPD_1365	-	hypothetical protein
1292	 43.61	0	1380045..1380404	-	119	116516485	-	SPD_1366	-	hypothetical protein
1293	 41.18	0	1380406..1381806	-	466	116515578	-	SPD_1367	-	Cof family protein/peptidyl-prolyl cis-trans isomerase, cyclophilin type
1294	 41.25	0	1382101..1382340	-	79	116516750	rpsR	SPD_1368	-	30S ribosomal protein S18
1295	 43.52	0	1382372..1382842	-	156	116516879	ssb	SPD_1369	-	single-strand DNA-binding protein
1296	 38.49	0	1382854..1383144	-	96	116516740	rpsF	SPD_1370	-	30S ribosomal protein S6
1297	 43.82	0	1383297..1384640	-	447	116515635	asnC	SPD_1371	-	asparaginyl-tRNA synthetase
1298	 39.34	0	1384659..1385024	-	121	116515820	-	SPD_1372	-	glyoxalase family protein
1299	 46.72	+1	1385017..1386204	-	395	116516335	aspC	SPD_1373	-	aspartate aminotransferase
1300	 39.12	0	1386201..1386632	-	143	116516103	-	SPD_1374	-	hypothetical protein
1301	 45.36	+1	1387010..1387558	+	182	116517197	-	SPD_1375	-	hypothetical protein
1302	 42.32	0	1387796..1395451	-	2551	116515899	-	SPD_1376	-	G5 domain-containing protein
1303	 33.80	-1	1395667..1397151	+	494	116516572	-	SPD_1377	-	hypothetical protein
1304	 41.98	0	1397202..1397930	-	242	116516903	-	SPD_1378	-	hypothetical protein
1305	 39.39	0	1398009..1398173	-	54	116515817	-	SPD_1379	-	hypothetical protein
1306	 42.61	0	1398340..1399935	-	531	116517106	-	SPD_1380	-	hypothetical protein
1307	 45.50	+1	1399947..1400357	-	136	116515494	def-2	SPD_1381	-	peptide deformylase
1308	 39.90	0	1400473..1401264	-	263	116516324	-	SPD_1382	-	putative glutathione S-transferase YghU
1309	 44.20	0	1401277..1403973	-	898	116516314	-	SPD_1383	-	cation-transporting ATPase, E1-E2 family protein
1310	 42.11	0	1404277..1405461	+	394	116517171	-	SPD_1384	-	cation efflux family protein
1311	 43.64	0	1405604..1407475	-	623	116516141	-	SPD_1385	-	ABC transporter, ATP-binding protein
1312	 44.05	0	1407472..1408656	-	394	116517000	-	SPD_1386	-	tRNA CCA-pyrophosphorylase
1313	 45.83	+1	1408668..1409435	-	255	116515624	dapB	SPD_1387	-	dihydrodipicolinate reductase
1314	 42.17	0	1409712..1410560	-	282	116516817	-	SPD_1388	-	DegV family protein
1315	 36.53	0	1410562..1410936	-	124	116515411	-	SPD_1389	-	hypothetical protein
1316	 44.35	0	1411010..1412362	-	450	116516422	-	SPD_1390	-	phosphoglucomutase/phosphomannomutase family protein
1317	 39.62	0	1412386..1413165	-	259	116517073	-	SPD_1391	-	hypothetical protein
1318	 39.83	0	1413152..1413967	-	271	116516268	-	SPD_1392	-	hypothetical protein
1319	 44.69	+1	1414145..1415113	+	322	116516331	-	SPD_1393	-	pyridine nucleotide-disulphide oxidoreductase family protein
1320	 45.18	+1	1415147..1416058	-	303	116515514	-	SPD_1394	-	hypothetical protein
1321	 45.40	+1	1416055..1417032	-	325	116516455	-	SPD_1395	-	hypothetical protein
1322	 44.11	0	1417029..1417919	-	296	116515346	-	SPD_1396	-	hypothetical protein
1323	 43.57	0	1417971..1418351	-	126	116516493	-	SPD_1397	-	endoribonuclease L-PSP
1324	 44.05	0	1418362..1418949	-	195	116515393	-	SPD_1398	-	GTPase EngB
1325	 43.15	0	1418958..1420190	-	410	116517127	clpX	SPD_1399	-	ATP-dependent protease ATP-binding subunit
1326	 39.77	0	1420222..1420392	-	56	116516044	-	SPD_1400	-	hypothetical protein
1327	 42.80	0	1420392..1420898	-	168	116516966	folA	SPD_1401	-	dihydrofolate reductase
1328	 41.43	0	1421028..1421546	-	172	116515815	-	SPD_1402	-	non-heme iron-containing ferritin
1329	 39.31	0	1422042..1423514	-	490	116515853	lytC	SPD_1403	-	1,4-beta-N-acetylmuramidase, putative
1330	 42.82	0	1423585..1424343	-	252	116516798	tpiA	SPD_1404	-	triosephosphate isomerase
1331	 43.07	0	1424441..1425118	-	225	116516031	-	SPD_1405	-	hypothetical protein
1332	 41.48	0	1425127..1426071	-	314	116516883	metA	SPD_1406	-	homoserine O-succinyltransferase
1333	 41.24	0	1426253..1426783	-	176	116516257	apt	SPD_1407	-	adenine phosphoribosyltransferase
1334	 36.50	0	1426853..1427611	-	252	116517093	-	SPD_1408	-	hypothetical protein
1335	 41.03	0	1428112..1429242	-	376	116515506	-	SPD_1409	-	sugar ABC transporter, ATP-binding protein
1336	 39.76	0	1429692..1430267	-	191	116516385	-	SPD_1411	-	isochorismatase family protein
1337	 40.30	0	1430267..1431055	-	262	116515749	codY	SPD_1412	-	transcriptional repressor CodY
1338	 43.56	0	1431319..1432893	-	524	116516011	-	SPD_1413	-	ATP-dependent RNA helicase, putative
1339	 40.59	0	1433092..1434318	-	408	116516469	-	SPD_1414	-	oxalate:formate antiporter
1340	 41.61	0	1434508..1435824	+	438	116515420	-	SPD_1415	-	pyridine nucleotide-disulfide oxidoreductase
1341	 44.27	0	1435923..1437266	+	447	116516543	-	SPD_1416	-	hypothetical protein
1342	 44.32	0	1437266..1438048	+	260	116515943	-	SPD_1417	-	hypothetical protein
1343	 43.95	0	1438174..1439256	+	360	116516123	pepQ	SPD_1418	-	proline dipeptidase PepQ
1344	 34.80	-1	1439249..1439452	+	67	116517192	-	SPD_1419	-	hypothetical protein
1345	 41.34	0	1441071..1441532	-	153	116515766	-	SPD_1422	-	hypothetical protein
1346	 42.51	0	1441510..1442283	-	257	116516841	-	SPD_1423	-	phosphomethylpyrimidine kinase
1347	 43.87	0	1442273..1443022	-	249	116516785	truA	SPD_1424	-	tRNA pseudouridine synthase A
1348	 43.06	0	1443335..1444486	-	383	116515935	-	SPD_1425	-	transporter, major facilitator family protein
1349	 38.25	0	1444726..1445355	-	209	116516383	-	SPD_1426	-	hypothetical protein
1350	 41.59	0	1445358..1445696	-	112	116516386	phnA	SPD_1427	-	PhnA protein
1351	 42.11	0	1445827..1446498	-	223	116515618	cmk	SPD_1428	-	cytidylate kinase
1352	 44.44	0	1446507..1446983	-	158	116516758	-	SPD_1429	-	hypothetical protein
1353	 41.06	0	1447035..1447241	+	68	116515900	fer	SPD_1430	-	ferredoxin
1354	 42.03	0	1447303..1448256	-	317	116515490	-	SPD_1431	-	glycosyl transferase, group 2 family protein
1355	 43.43	0	1448258..1449277	-	339	116516336	galE-1	SPD_1432	-	UDP-glucose 4-epimerase
1356	 45.92	+1	1449578..1450681	-	367	116516255	-	SPD_1433	-	FAD dependent oxidoreductase
1357	 44.24	0	1450698..1451495	-	265	116517031	-	SPD_1434	-	hypothetical protein
1358	 44.10	0	1451482..1452159	-	225	116515616	-	SPD_1435	-	hypothetical protein
1359	 46.64	+1	1452261..1454597	-	778	116515937	-	SPD_1436	-	cation-transporting ATPase, E1-E2 family protein
1360	 42.80	0	1454730..1455479	+	249	116515478	-	SPD_1437	-	acyltransferase domain-containing protein
1361	 37.56	0	1455772..1456386	-	204	116516294	-	SPD_1438	-	cadmium resistance transporter, putative
1362	 41.48	0	1457120..1457389	-	89	116517150	rpsO	SPD_1439	-	30S ribosomal protein S15
1363	 35.71	0	1457530..1458159	-	209	116516085	-	SPD_1440	-	hypothetical protein
1364	 23.58	-2	1458222..1458344	+	40	116516356	-	SPD_1441	-	hypothetical protein
1365	 41.06	0	1458963..1459169	+	68	116515517	-	SPD_1442	-	hypothetical protein
1366	 37.85	0	1459176..1459352	+	58	116517071	-	SPD_1443	-	hypothetical protein
40.03	MEAN

4.59	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.