IslandPathversion 1.0

IslandPath Analysis: Streptococcus pneumoniae D39



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.03 STD DEV: 4.59
Streptococcus pneumoniae D39, complete genome - 1..2046115
1914 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1030	 43.38	0	1122430..1122897	-	155	116516427	-	SPD_1092	-	MutT/nudix family protein
1031	 34.97	-1	1122971..1123459	-	162	116516559	-	SPD_1094	-	acetyltransferase, GNAT family protein
1032	 32.09	-1	1123425..1123988	-	187	116517136	-	SPD_1095	-	hypothetical protein
1033	 45.15	+1	1123998..1125986	-	662	116516486	uvrB	SPD_1096	-	excinuclease ABC subunit B
1034	 39.10	0	1126063..1127016	-	317	116515798	-	SPD_1097	-	hypothetical protein
1035	 39.38	0	1127189..1129354	+	721	116516932	-	SPD_1098	-	amino acid ABC transporter, amino acid-binding protein/permease protein
1036	 42.38	0	1129354..1130094	+	246	116516532	-	SPD_1099	-	amino acid ABC transporter, ATP-binding protein
1037	 41.60	0	1130243..1131730	+	495	116515777	zwf	SPD_1100	-	glucose-6-phosphate 1-dehydrogenase
1038	 41.78	0	1131776..1133053	-	425	116516398	ftsY	SPD_1101	-	signal recognition particle-docking protein FtsY
1039	 42.25	0	1133057..1133875	-	272	116515438	-	SPD_1102	-	Cof family protein
1040	 39.87	0	1133875..1134669	-	264	116516975	-	SPD_1103	-	Cof family protein
1041	 43.02	0	1134666..1138205	-	1179	116515906	smc	SPD_1104	-	chromosome segregation protein SMC
1042	 40.34	0	1138196..1138894	-	232	116517072	rnc	SPD_1105	-	ribonuclease III
1043	 42.55	0	1139212..1140198	-	328	116516265	guaC	SPD_1107	-	guanosine 5'-monophosphate oxidoreductase
1044	 35.46	0	1140373..1141689	-	438	116516577	-	SPD_1108	-	hypothetical protein
1045	 33.07	-1	1141676..1143607	-	643	116515594	-	SPD_1109	-	endonuclease, putative
1046	 44.44	0	1143771..1143932	-	53	116516694	-	SPD_1110	-	hypothetical protein
1047	 41.38	0	1143922..1144095	-	57	116515996	-	SPD_1111	-	hypothetical protein
1048	 45.83	+1	1144195..1144338	-	47	116516497	-	SPD_1112	-	hypothetical protein
1049	 42.78	0	1144557..1144916	-	119	116515583	-	SPD_1113	-	3-isopropylmalate dehydratase small subunit, putative
1050	 42.98	0	1145014..1145127	+	37	116515939	-	SPD_1114	-	hypothetical protein
1051	 43.16	0	1145186..1146223	-	345	116516851	leuB	SPD_1115	-	3-isopropylmalate dehydrogenase
1052	 39.73	0	1147348..1148004	-	218	116515984	-	SPD_1117	-	hypothetical protein
1053	 42.97	0	1148048..1148680	-	210	116516861	cutC	SPD_1118	-	copper homeostasis protein CutC
1054	 39.17	0	1148773..1149132	-	119	116515673	-	SPD_1119	-	hypothetical protein
1055	 42.58	0	1149238..1151325	-	695	116516615	topA	SPD_1120	-	DNA topoisomerase I
1056	 34.77	-1	1151492..1152535	-	347	116515556	-	SPD_1121	-	hypothetical protein
1057	 41.11	0	1153425..1154273	-	282	116516400	-	SPD_1122	-	DNA processing protein DprA, putative
1058	 36.38	0	1154369..1155058	-	229	116515684	licC	SPD_1123	-	CTP:phosphocholine cytidylyltransferase
1059	 39.82	0	1155070..1155948	-	292	116516542	licB	SPD_1124	-	protein LicB
1060	 35.06	-1	1155938..1156807	-	289	116515546	pck	SPD_1125	-	choline kinase
1061	 40.18	0	1156824..1157846	-	340	116516315	-	SPD_1126	-	alcohol dehydrogenase, zinc-containing
1062	 38.84	0	1157851..1158558	-	235	116517103	ispD	SPD_1127	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
1063	 36.63	0	1158894..1160381	+	495	116516241	-	SPD_1128	-	polysaccharide biosynthesis protein, putative
1064	 34.08	-1	1160391..1161194	+	267	116516858	licD1	SPD_1129	-	phosphotransferase LicD1
1065	 37.41	0	1161196..1162005	+	269	116515975	licD2	SPD_1130	-	phosphotransferase LicD2
1066	 44.44	0	1162280..1165456	-	1058	116516501	carB	SPD_1131	-	carbamoyl phosphate synthase large subunit
1067	 44.17	0	1165769..1166848	-	359	116515374	carA	SPD_1132	-	carbamoyl phosphate synthase small subunit
1068	 42.64	0	1166898..1167821	-	307	116516819	pyrB	SPD_1133	-	aspartate carbamoyltransferase catalytic subunit
1069	 41.38	0	1167840..1168361	-	173	116515708	pyrR	SPD_1134	-	pyrimidine regulatory protein PyrR
1070	 44.60	0	1168572..1169201	-	209	116516035	nth	SPD_1135	-	endonuclease III
1071	 38.49	0	1169201..1169743	-	180	116516761	-	SPD_1136	-	hypothetical protein
1072	 39.87	0	1170469..1172028	+	519	116517191	-	SPD_1137	-	ABC transporter, ATP-binding protein
1073	 44.22	0	1172177..1173076	-	299	116516057	htpX	SPD_1138	-	heat shock protein HtpX
1074	 39.22	0	1173078..1173638	-	186	116516003	lemA	SPD_1139	-	LemA protein
1075	 41.88	0	1173732..1174445	+	237	116516833	gidB	SPD_1140	-	glucose-inhibited division protein B
1076	 42.91	0	1174797..1176080	+	427	116516034	uraA	SPD_1141	-	uracil-xanthine permease
1077	 43.64	0	1176275..1177846	-	523	116515651	ffh	SPD_1142	-	signal recognition particle protein
1078	 39.04	0	1177858..1178190	-	110	116515551	-	SPD_1143	-	hypothetical protein
1079	 38.10	0	1178281..1178658	-	125	116516359	-	SPD_1144	-	hypothetical protein
1080	 44.75	+1	1178730..1180034	+	434	116516095	-	SPD_1145	-	hypothetical protein
1081	 45.11	+1	1180047..1180853	+	268	116516922	-	SPD_1146	-	Cof family protein
1082	 42.53	0	1181021..1181368	-	115	116516185	rplS	SPD_1148	-	50S ribosomal protein L19
1083	 36.67	0	1181487..1181816	-	109	116515926	crcB1	SPD_1149	-	CrcB protein
1084	 42.67	0	1181810..1182184	-	124	116516795	crcB2	SPD_1150	-	CrcB protein
1085	 37.45	0	1182181..1182447	-	88	116516649	-	SPD_1151	-	hypothetical protein
1086	 41.89	0	1182563..1183006	-	147	116516999	fld	SPD_1152	-	flavodoxin
1087	 44.44	0	1183110..1184045	+	311	116516410	-	SPD_1153	-	DHH subfamily 1 protein
1088	 41.98	0	1184141..1184383	+	80	116515764	rpmE2	SPD_1154	-	50S ribosomal protein L31 type B
1089	 39.38	0	1184440..1185018	-	192	116516672	-	SPD_1155	-	hypothetical protein
1090	 42.79	0	1184993..1185997	-	334	116516026	-	SPD_1156	-	Dyp-type peroxidase family protein
1091	 41.95	0	1186049..1186315	-	88	116516847	-	SPD_1157	-	hypothetical protein
1092	 42.91	0	1187003..1188349	+	448	116516965	gdhA	SPD_1158	-	glutamate dehydrogenase
1093	 29.24	-2	1188845..1189015	-	56	116515897	-	SPD_1159	-	hypothetical protein
1094	 32.55	-1	1189028..1189669	-	213	116516496	-	SPD_1160	-	ABC transporter, ATP-bindng protein
1095	 38.36	0	1189941..1190378	+	145	116516155	-	SPD_1161	-	hypothetical protein
1096	 42.16	0	1190669..1190872	-	67	116516734	-	SPD_1162	-	hypothetical protein
1097	 43.31	0	1190890..1191621	-	243	116515419	-	SPD_1163	-	N-acetylneuraminate lyase, putative
1098	 33.82	-1	1191839..1192246	-	135	116516518	cdd-2	SPD_1164	-	cytidine deaminase
1099	 30.67	-2	1192534..1193022	-	162	116515484	-	SPD_1165	-	hypothetical protein
1100	 34.47	-1	1193027..1194436	-	469	116515829	-	SPD_1166	-	hypothetical protein
1101	 34.44	-1	1194446..1196428	-	660	116515706	-	SPD_1167	-	ABC transporter, ATP-binding protein
1102	 36.62	0	1196441..1197292	-	283	116515771	-	SPD_1168	-	oligopeptide ABC transporter, pemease protein
1103	 32.91	-1	1197309..1198259	-	316	116516656	-	SPD_1169	-	oligopeptide ABC transporter, permease protein
1104	 30.57	-2	1198369..1199997	-	542	116515339	-	SPD_1170	-	oligopeptide ABC transporter,oligopeptide-binding protein
1105	 32.47	-1	1200079..1201002	-	307	116516633	-	SPD_1171	-	hypothetical protein
1106	 43.06	0	1201026..1201724	-	232	116516481	nanE-2	SPD_1172	-	N-acetylmannosamine-6-phosphate 2-epimerase
1107	 35.14	-1	1202617..1202838	-	73	116517215	-	SPD_1174	-	hypothetical protein
1108	 28.33	-2	1203902..1205221	-	439	116515372	-	SPD_1175	-	hypothetical protein
1109	 33.60	-1	1205224..1205964	-	246	116516042	-	SPD_1176	-	ABC transporter, ATP-binding protein
1110	 27.61	-2	1205979..1207586	-	535	116517121	-	SPD_1177	-	drug efflux ABC transporter, ATP-binding/permease protein
1111	 32.46	-1	1207583..1209523	-	646	116516607	-	SPD_1178	-	prolyl oligopeptidase family protein
1112	 32.61	-1	1209556..1212165	-	869	116515683	-	SPD_1179	-	hypothetical protein
1113	 34.01	-1	1212683..1213270	-	195	116515695	-	SPD_1180	-	CAAX amino terminal protease family protein
1114	 37.50	0	1213363..1213506	-	47	116516016	-	SPD_1181	-	hypothetical protein
1115	 32.28	-1	1213519..1213899	-	126	116516880	-	SPD_1182	-	hypothetical protein
1116	 33.33	-1	1213954..1214232	-	92	116516289	-	SPD_1183	-	hypothetical protein
1117	 35.69	0	1214240..1214494	-	84	116515907	-	SPD_1184	-	hypothetical protein
1118	 35.63	0	1214491..1214664	-	57	116516935	-	SPD_1185	-	hypothetical protein
1119	 30.60	-2	1214640..1214822	+	60	116515620	-	SPD_1186	-	hypothetical protein
1120	 40.65	0	1214852..1215220	-	122	116516621	rplL	SPD_1187	-	50S ribosomal protein L7/L12
1121	 43.11	0	1215296..1215796	-	166	116516650	rplJ	SPD_1188	-	50S ribosomal protein L10
1122	 36.44	0	1215801..1216025	+	74	116516775	-	SPD_1189	-	hypothetical protein
1123	 43.25	0	1216046..1217305	-	419	116515507	-	SPD_1190	-	chlorohydrolase
1124	 42.87	0	1217607..1219358	-	583	116516549	-	SPD_1191	-	ABC transporter, ATP-binding/permease protein
1125	 43.19	0	1219360..1221084	-	574	116516223	-	SPD_1192	-	ABC transporter, ATP-binding/permease protein
1126	 43.98	0	1221142..1222080	-	312	116516363	msrAB1	SPD_1193	-	bifunctional methionine sulfoxide reductase A/B protein
1127	 45.86	+1	1222376..1223245	-	289	116517101	thrB	SPD_1194	-	homoserine kinase
1128	 42.89	0	1223247..1224533	-	428	116516244	hom	SPD_1195	-	homoserine dehydrogenase
1129	 39.97	0	1224684..1225421	-	245	116515689	mecA	SPD_1196	-	adaptor protein
40.03	MEAN

4.59	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.