IslandPath Analysis: Streptococcus pneumoniae R6



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 39.86   STD DEV: 4.53
Streptococcus pneumoniae R6, complete genome - 1..2038615
2043 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
883	 40.90	0	874443..875156	+	237	15902927	-	spr0883	-	O-methyltransferase
884	 36.94	0	875223..876164	+	313	15902928	prsA	spr0884	-	foldase protein PrsA
885	 38.68	0	876381..876623	-	80	15902929	IS861-truncation	spr0885	-	degenerate transposase (orf2)
886	 28.28	-2	876623..876820	-	65	15902930	IS861-truncation	spr0886	-	degenerate transposase (orf1)
887	 42.35	0	877383..878003	-	206	15902931	gpmB	spr0887	-	phosphoglycerate mutase family protein
888	 39.54	0	878003..878485	-	160	15902932	ebsC	spr0888	-	regulatory protein, putative
889	 41.64	0	878485..879327	-	280	15902933	-	spr0889	-	hypothetical protein
890	 38.08	0	879422..880222	-	266	15902934	-	spr0890	-	hypothetical protein
891	 41.04	0	880306..881745	+	479	15902935	gcaD	spr0891	-	UDP-N-acetylglucosamine pyrophosphorylase
892	 41.39	0	881755..882300	+	181	15902936	-	spr0892	-	hypothetical protein
893	 35.34	0	882279..882626	+	115	15902937	-	spr0893	-	hypothetical protein
894	 43.43	0	882643..883335	+	230	15902938	pfs	spr0894	-	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
895	 37.80	0	883412..883903	+	163	15902939	-	spr0895	-	hypothetical protein
896	 40.03	0	883965..884591	+	208	15902940	dnaQ	spr0896	-	DNA polymerase III subunit epsilon
897	 36.21	0	884594..886363	+	589	15902941	-	spr0897	-	hypothetical protein
898	 35.79	0	886559..886924	+	121	15902942	transposase_A	spr0898	-	degenerative transposase
899	 36.17	0	887083..887223	+	46	15902943	transposase_B	spr0899	-	degenerate transposase
900	 48.26	+1	887384..887584	+	66	15902944	-	spr0900	-	hypothetical protein
901	 45.34	+1	887403..888035	-	210	15902945	-	spr0901	-	hypothetical protein
902	 43.70	0	887626..888030	+	134	15902946	-	spr0902	-	hypothetical protein
903	 36.16	0	888261..888968	+	235	15902947	ccdA	spr0903	-	cytochrome c-type biogenesis protein
904	 37.85	0	888961..889536	+	191	15902948	-	spr0904	-	hypothetical protein
905	 41.10	0	889898..891301	+	467	15902949	yfnA	spr0905	-	cationic amino acid transporter
906	 38.46	0	891426..892361	+	311	15902950	lmb	spr0906	-	adhesion lipoprotein
907	 41.57	0	892369..894930	+	853	15902951	phtD	spr0907	-	pneumococcal histidine triad protein D precursor
908	 36.44	0	895140..898259	+	1039	15902952	phtE	spr0908	-	pneumococcal histidine triad protein E precursor
909	 35.46	0	899089..899229	+	46	15902953	-	spr0909	-	hypothetical protein
910	 39.16	0	899263..899811	+	182	15902954	phtE-truncation	spr0910	-	pneumococcal histidine triad protein E precursor, truncation
911	 39.35	0	899873..900088	-	71	15902955	-	spr0911	-	hypothetical protein
912	 38.25	0	900059..900688	+	209	15902956	-	spr0912	-	hypothetical protein
913	 42.34	0	900731..901951	-	406	15902957	pepT	spr0913	-	peptidase T
914	 37.81	0	902106..903200	+	364	15902958	hemH	spr0914	-	ferrochelatase
915	 37.30	0	903242..903619	-	125	15902959	mscL	spr0915	-	large conductance mechanosensitive channel protein MscL
916	 30.56	-2	903701..904132	-	143	15902960	mesH	spr0916	-	GtrA family protein
917	 37.11	0	904183..904764	+	193	15902961	ccl	spr0917	-	hypothetical protein
918	 41.41	0	905279..906355	+	358	15902962	asd	spr0918	-	aspartate-semialdehyde dehydrogenase
919	 42.95	0	906411..907346	+	311	15902963	dapA	spr0919	-	dihydrodipicolinate synthase
920	 44.61	+1	907393..908766	-	457	161410748	trmE	spr0920	-	tRNA modification GTPase TrmE
921	 46.45	+1	908903..909085	-	60	15902965	xylH	spr0921	-	4-oxalocrotonate tautomerase
922	 44.33	0	909208..909807	+	199	15902966	tdk	spr0922	-	thymidine kinase
923	 30.00	-2	909797..910276	+	159	15902967	bltD	spr0923	-	spermine/spermidine acetyltransferase
924	 45.09	+1	910286..911365	+	359	15902968	prfA	spr0924	-	peptide chain release factor 1
925	 37.98	0	911365..912204	+	279	15902969	hemK	spr0925	-	HemK protein
926	 43.79	0	912179..912790	+	203	15902970	-	spr0926	-	hypothetical protein
927	 40.76	0	912753..913223	+	156	15902971	-	spr0927	-	hypothetical protein
928	 42.56	0	913285..914541	+	418	15902972	glyA	spr0928	-	serine hydroxymethyltransferase
929	 38.00	0	914516..915523	+	335	15902973	-	spr0929	-	hypothetical protein
930	 41.63	0	915523..916137	+	204	15902974	-	spr0930	-	hypothetical protein
931	 40.51	0	916211..917185	+	324	15902975	-	spr0931	-	hypothetical protein
932	 40.75	0	917259..918890	+	543	15902976	-	spr0932	-	hypothetical protein
933	 30.14	-2	919628..919846	+	72	15902977	-	spr0933	-	hypothetical protein
934	 31.09	-1	920239..921264	+	341	15902978	ABC-SBP	spr0934	-	iron-compound ABC transporter, iron compound-binding protein
935	 33.43	-1	921242..922261	+	339	15902979	ABC-MSP	spr0935	-	iron-compound ABC transporter, permease protein
936	 30.36	-2	922261..923268	+	335	15902980	ABC-MSP	spr0936	-	iron-compound ABC transporter, permease protein
937	 33.09	-1	922743..923156	-	137	15902981	-	spr0937	-	hypothetical protein
938	 33.58	-1	923268..924062	+	264	15902982	ABC-NBD	spr0938	-	iron-compound ABC transporter, ATP-binding protein
939	 25.24	-2	924630..924839	+	69	15902983	-	spr0939	-	hypothetical protein
940	 28.85	-2	924964..925119	+	51	15902984	-	spr0940	-	hypothetical protein
941	 35.80	0	925803..925964	+	53	15902985	-	spr0941	-	hypothetical protein
942	 33.57	-1	926056..927735	+	559	15902986	ccrB	spr0942	-	low similarity to site-specific recombinase
943	 33.99	-1	927958..928569	+	203	15902987	-	spr0943	-	hypothetical protein
944	 31.31	-1	928882..929079	+	65	15902988	-	spr0944	-	hypothetical protein
945	 32.84	-1	929141..929956	+	271	15902989	-	spr0945	-	hypothetical protein
946	 40.12	0	929956..930810	+	284	15902990	-	spr0946	-	hydrolase, putative
947	 36.22	0	930871..931806	+	311	15902991	-	spr0947	-	hypothetical protein
948	 39.23	0	931945..933708	+	587	15902992	nplT	spr0948	-	neopullulanase
949	 33.65	-1	933794..934111	+	105	15902993	-	spr0949	-	hypothetical protein
950	 29.43	-2	934157..934438	+	93	15902994	-	spr0950	-	hypothetical protein
951	 31.65	-1	934826..935359	+	177	15902995	-	spr0951	-	transcriptional regulator
952	 35.96	0	935359..936120	+	253	15902996	-	spr0952	-	hypothetical protein
953	 26.38	-2	936148..936924	+	258	15902997	-	spr0953	-	hypothetical protein
954	 31.79	-1	936852..937304	+	150	15902998	-	spr0954	-	hypothetical protein
955	 35.28	-1	938136..938495	+	119	15902999	-	spr0955	-	Tn5252, ORF 10 protein
956	 34.55	-1	938505..938834	+	109	15903000	-	spr0956	-	Tn5252, ORF 9 protein
957	 34.14	-1	938857..939474	+	205	15903001	relaxase-truncation	spr0957	-	Tn5252, relaxase, truncation
958	 31.90	-1	939505..940062	+	185	15903002	relaxase-truncation	spr0958	-	Tn5252, relaxase, truncation
959	 30.49	-2	940146..940742	+	198	15903003	-	spr0959	-	hypothetical protein
960	 29.94	-2	940787..941641	-	284	15903004	mutR	spr0960	-	putative positive transcriptional regulator MutR
961	 30.40	-2	941893..943188	+	431	15903005	rffD	spr0961	-	UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase
962	 31.34	-1	943148..943798	+	216	15903006	-	spr0962	-	hypothetical protein
963	 28.22	-2	943808..944590	+	260	15903007	-	spr0963	-	hypothetical protein
964	 27.36	-2	944613..946505	+	630	15903008	-	spr0964	-	hypothetical protein
965	 29.90	-2	946534..947640	+	368	15903009	-	spr0965	-	hypothetical protein
966	 29.37	-2	947648..948958	+	436	15903010	-	spr0966	-	hypothetical protein
967	 27.37	-2	948960..950183	+	407	15903011	-	spr0967	-	hypothetical protein
968	 30.81	-1	950173..951123	+	316	15903012	-	spr0968	-	hypothetical protein
969	 27.92	-2	951138..952337	+	399	15903013	nikS	spr0969	-	nikkomycin biosynthesis protein, carboxylase
970	 33.02	-1	952356..953000	+	214	15903014	-	spr0970	-	hypothetical protein
971	 30.53	-2	953383..954594	+	403	15903015	mefE	spr0971	-	ABC transporter membrane-spanning permease - macrolide efflux
972	 34.68	-1	955253..955474	+	73	15903016	-	spr0972	-	hypothetical protein
973	 39.19	0	956376..957605	+	409	15903017	ftsW	spr0973	-	cell division protein FtsW, putative
974	 38.34	0	957625..960321	+	898	15903018	ppc	spr0974	-	phosphoenolpyruvate carboxylase
975	 39.03	0	960704..961738	+	344	15903019	ABC-SBP	spr0975	-	hypothetical protein
976	 42.68	0	961807..962673	+	288	15903020	ABC-MSP	spr0976	-	ABC transporter membrane-spanning permease - unknown substrate
977	 39.26	0	962670..963428	+	252	15903021	ABC-NBD	spr0977	-	ABC transporter ATP-binding protein
978	 42.17	0	963503..965278	+	591	15903022	dnaG	spr0978	-	DNA primase
979	 43.15	0	965281..966390	+	369	15903023	rpoD	spr0979	-	RNA polymerase sigma factor RpoD
980	 40.50	0	966371..966733	+	120	15903024	-	spr0980	-	hypothetical protein
981	 39.82	0	966767..967891	+	374	15903025	cpoA	spr0981	-	glycosyl transferase CpoA
982	 41.48	0	967907..969232	+	441	15903026	-	spr0982	-	glycosyl transferase, group 1
39.86	MEAN

4.53	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.