IslandPath Analysis: Streptococcus pneumoniae R6



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 39.86   STD DEV: 4.53
Streptococcus pneumoniae R6, complete genome - 1..2038615
2043 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
704	 35.62	0	703224..704099	+	291	15902748	-	spr0704	-	hypothetical protein
705	 42.40	0	704074..704514	+	146	15902749	-	spr0705	-	hypothetical protein
706	 44.29	0	704637..707183	+	848	15902750	pepN	spr0706	-	aminopeptidase N
707	 37.25	0	707226..707966	+	246	15902751	ciaR	spr0707	-	DNA-binding response regulator CiaR
708	 38.50	0	707956..709290	+	444	15902752	ciaH	spr0708	-	sensor histidine kinase CiaH
709	 34.38	-1	709324..709611	-	95	15902753	-	spr0709	-	hypothetical protein
710	 40.52	0	709610..710680	+	356	15902754	-	spr0710	-	hypothetical protein
711	 40.23	0	710880..713330	+	816	15902755	dinG	spr0711	-	bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon
712	 39.97	0	713340..714590	+	416	15902756	rodA	spr0712	-	rod shape-determining protein RodA, putative
713	 43.60	0	714601..715155	+	184	15902757	thiJ	spr0713	-	4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis protein, putative
714	 37.52	0	715231..715803	+	190	15902758	gph	spr0714	-	phosphoglycolate phosphatase
715	 42.78	0	715818..717764	+	648	15902759	gyrB	spr0715	-	DNA gyrase subunit B
716	 36.18	0	717819..719573	+	584	15902760	ezrA	spr0716	-	septation ring formation regulator EzrA
717	 39.51	0	720316..720720	+	134	15902761	transposase_C	spr0717	-	transposase
718	 38.53	0	720608..721261	+	217	15902762	transposase_D	spr0718	-	transposase
719	 42.22	0	721347..721526	-	59	15902763	transposase_E	spr0719	-	transposase
720	 37.00	0	721895..722194	-	99	15902764	-	spr0720	-	hypothetical protein
721	 39.48	0	722359..722781	-	140	15902765	-	spr0721	-	MutT/nudix family protein
722	 36.49	0	722874..723221	+	115	15902766	transposase_A	spr0722	-	transposase
723	 44.05	0	723400..723483	+	27	15902767	transposase_B	spr0723	-	degenerate transposase
724	 36.72	0	723532..723708	+	58	15902768	transposase_B	spr0724	-	degenerate transposase
725	 43.43	0	723946..726204	-	752	15902769	clpE	spr0725	-	ATP dependent protease
726	 41.56	0	726433..726663	-	76	15902770	-	spr0726	-	hypothetical protein
727	 39.28	0	726847..727536	+	229	15902771	glnP	spr0727	-	amino acid ABC transporter permease
728	 43.27	0	727536..728270	+	244	15902772	glnQ	spr0728	-	amino acid ABC transporter ATP-binding protein
729	 45.17	+1	728361..729281	+	306	15902773	folD	spr0729	-	methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase
730	 43.87	0	729423..730295	+	290	15902774	-	spr0730	-	hypothetical protein
731	 43.05	0	730520..731260	+	246	15902775	rpiA	spr0731	-	ribose-5-phosphate isomerase A
732	 42.20	0	731211..732485	+	424	15902776	deoB	spr0732	-	phosphopentomutase
733	 41.36	0	732487..732897	+	136	15902777	-	spr0733	-	hypothetical protein
734	 44.20	0	733045..733854	+	269	15902778	pnp	spr0734	-	purine nucleoside phosphorylase
735	 38.44	0	734318..735061	+	247	15902779	-	spr0735	-	hypothetical protein
736	 39.22	0	735107..735310	+	67	15902780	-	spr0736	-	hypothetical protein
737	 41.52	0	735335..735847	+	170	15902781	-	spr0737	-	hemolysin-related protein
738	 42.48	0	736505..737215	+	236	15902782	deoD	spr0738	-	purine nucleoside phosphorylase (inosine phosphorylase)
739	 38.67	0	737238..737762	-	174	15902783	flaR	spr0739	-	topology modulation protein
740	 38.40	0	737815..738051	-	78	161410750	rpsT	spr0740	-	30S ribosomal protein S20
741	 38.38	0	738119..739069	-	316	15902785	coaA	spr0741	-	pantothenate kinase
742	 33.56	-1	739237..739677	+	146	15902786	-	spr0742	-	hypothetical protein
743	 39.93	0	739884..740474	+	196	15902787	-	spr0743	-	hypothetical protein
744	 42.96	0	740471..741748	+	425	15902788	pdp	spr0744	-	pyrimidine-nucleoside phosphorylase
745	 41.63	0	741766..742428	+	220	15902789	deoC	spr0745	-	deoxyribose-phosphate aldolase
746	 41.54	0	742415..742804	+	129	15902790	cdd	spr0746	-	cytidine deaminase
747	 42.22	0	742822..743946	+	374	15902791	-	spr0747	-	hypothetical protein
748	 41.93	0	744090..745625	+	511	15902792	ABC-NBD	spr0748	-	sugar ABC transporter, ATP-binding protein
749	 44.57	+1	745591..746676	+	361	15902793	ABC-MSP	spr0749	-	sugar ABC transporter, permease protein, putative
750	 42.74	0	746679..747635	+	318	15902794	ABC-MSP	spr0750	-	sugar ABC transporter, permease protein, putative
751	 26.76	-2	747720..747932	+	70	15902795	IS861-truncation	spr0751	-	degenerate transposase (orf1)
752	 38.69	0	748068..748235	+	55	15902796	IS861-truncation	spr0752	-	degenerate transposase (orf1)
753	 36.31	0	748235..748603	+	122	15902797	IS861-truncation	spr0753	-	degenerate transposase (orf2)
754	 36.81	0	748579..749067	+	162	15902798	IS861-truncation	spr0754	-	degenerate transposase (orf2)
755	 41.43	0	749110..749751	-	213	15902799	-	spr0755	-	putative glycerol-3-phosphate acyltransferase PlsY
756	 45.16	+1	749887..751830	+	647	15902800	parE	spr0756	-	DNA topoisomerase IV subunit B
757	 43.97	0	752241..754721	+	826	15902801	parC	spr0757	-	DNA topoisomerase IV subunit A
758	 41.35	0	754851..755873	+	340	15902802	ilvE	spr0758	-	branched-chain amino acid aminotransferase
759	 36.03	0	755929..756633	+	234	15902803	ABC-SBP-internal-deletion	spr0759	-	ABC transporter substrate-binding protein - oligopeptid transport, internal deletion
760	 36.99	0	756677..757387	+	236	15902804	-	spr0760	-	hypothetical protein
761	 38.53	0	757384..758307	+	307	15902805	-	spr0761	-	hypothetical protein
762	 39.07	0	758322..758966	+	214	15902806	pcp	spr0762	-	pyrrolidone-carboxylate peptidase
763	 29.44	-2	759134..759364	+	76	15902807	-	spr0763	-	hypothetical protein
764	 40.98	0	759737..760939	+	400	15902808	rpsA	spr0764	-	30S ribosomal protein S1
765	 34.75	-1	761074..761214	-	46	15902809	IS1167-truncation	spr0765	-	degenerate transposase (orf2)
766	 36.79	0	761198..761602	-	134	15902810	IS1167-truncation	spr0766	-	degenerate transposase (orf2)
767	 38.34	0	761883..762401	-	172	15902811	IS1167	spr0767	-	transposase
768	 38.96	0	762595..763092	+	165	15902812	-	spr0768	-	hypothetical protein
769	 41.97	0	763092..764747	+	551	15902813	dnaX	spr0769	-	DNA polymerase III subunits gamma and tau
770	 36.41	0	764775..764969	+	64	15902814	-	spr0770	-	hypothetical protein
771	 41.41	0	765098..765889	+	263	15902815	ABC-NBD	spr0771	-	ABC transporter ATP-binding protein - unknown substrate
772	 42.44	0	765917..767179	+	420	15902816	-	spr0772	-	hypothetical protein
773	 44.74	+1	767190..768416	+	408	15902817	-	spr0773	-	hypothetical protein
774	 40.82	0	768403..768843	+	146	15902818	nifU	spr0774	-	NifU protein
775	 41.83	0	768897..770309	+	470	15902819	-	spr0775	-	hypothetical protein
776	 39.86	0	770508..771749	-	413	15902820	dacA	spr0776	-	D-alanyl-D-alanine carboxypeptidase
777	 33.15	-1	771852..772961	+	369	15902821	-	spr0777	-	hypothetical protein
778	 42.78	0	774386..775126	+	246	15902822	fruR	spr0778	-	lactose phosphotransferase system repressor
779	 41.01	0	775123..776034	+	303	15902823	fruB	spr0779	-	1-phosphofructokinase
780	 44.55	+1	776031..777983	+	650	15902824	fruA	spr0780	-	PTS system, fructose specific IIABC components
781	 43.71	0	778069..780372	+	767	15902825	ftsK	spr0781	-	SpoE family protein
782	 35.77	0	780417..780950	-	177	15902826	-	spr0782	-	hypothetical protein
783	 44.09	0	780983..782125	+	380	15902827	-	spr0783	-	pyridoxal-phosphate dependent aminotransferase
784	 42.96	0	782134..783348	+	404	15902828	thiI	spr0784	-	thiamine biosynthesis protein ThiI
785	 41.81	0	783459..784307	+	282	15902829	-	spr0785	-	hypothetical protein
786	 44.35	0	784329..784664	+	111	15902830	-	spr0786	-	hypothetical protein
787	 45.60	+1	784604..785035	-	143	15902831	-	spr0787	-	hypothetical protein
788	 44.85	+1	784661..785068	+	135	15902832	-	spr0788	-	hypothetical protein
789	 41.90	0	785081..786247	+	388	15902833	-	spr0789	-	hypothetical protein
790	 36.28	0	786755..788248	+	497	15902834	hsdM	spr0790	-	type I restriction-modification system M subunit
791	 32.19	-1	788261..788872	+	203	15902835	hsdS	spr0791	-	Type I restriction-modification enzyme 1, S subunit
792	 37.75	0	788951..792301	+	1116	15902836	hsdR	spr0792	-	type I restriction-modification system R subunit
793	 42.25	0	792887..793357	-	156	15902837	argR	spr0793	-	arginine repressor
794	 40.49	0	793374..795761	-	795	15902838	pepXP	spr0794	-	x-prolyl-dipeptidyl aminopeptidase
795	 39.28	0	795966..799094	+	1042	15902839	dnaE	spr0795	-	DNA polymerase III DnaE
796	 44.35	0	799177..800184	+	335	15902840	pfkA	spr0796	-	6-phosphofructokinase
797	 41.17	0	800243..801748	+	501	15902841	pykF	spr0797	-	pyruvate kinase
798	 37.65	0	802865..803119	-	84	15902842	-	spr0798	-	hypothetical protein
799	 39.40	0	803555..804427	+	290	15902843	-	spr0799	-	hypothetical protein
800	 33.94	-1	804440..804604	+	54	15902844	-	spr0800	-	hypothetical protein
801	 37.04	0	804729..804917	-	62	15902845	IS1381-truncation	spr0801	-	degenerate transposase (orf1)
802	 34.94	-1	805060..805371	+	103	15902846	-	spr0802	-	hypothetical protein
803	 34.73	-1	805375..806091	+	238	15902847	-	spr0803	-	hypothetical protein
39.86	MEAN

4.53	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.