IslandPathversion 1.0

IslandPath Analysis: Streptococcus pneumoniae R6



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.86 STD DEV: 4.53
Streptococcus pneumoniae R6, complete genome - 1..2038615
2043 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
647	 43.07	0	653533..654477	+	314	15902691	pmi	spr0647	-	mannose-6-phosphate isomerase
648	 42.67	0	654580..655971	-	463	15902692	NS_transporter	spr0648	-	sodium-dependent transporter
649	 41.63	0	656131..656793	+	220	15902693	mta	spr0649	-	regulator of the multidrug efflux pump pmrA
650	 40.79	0	656822..657277	-	151	15902694	-	spr0650	-	hypothetical protein
651	 42.71	0	657297..658490	-	397	15902695	-	spr0651	-	hypothetical protein
652	 42.91	0	658531..659376	-	281	15902696	-	spr0652	-	hypothetical protein
653	 39.07	0	659501..660058	+	185	15902697	-	spr0653	-	hypothetical protein
654	 44.87	+1	660077..660544	+	155	15902698	comEB	spr0654	-	cytidine and deoxycytidylate deaminase family protein
655	 41.63	0	660612..661262	+	216	15902699	upp	spr0655	-	uracil phosphoribosyltransferase
656	 41.62	0	661436..662026	+	196	15902700	clpP	spr0656	-	ATP-dependent Clp protease proteolytic subunit
657	 36.55	0	662105..662353	+	82	15902701	-	spr0657	-	hypothetical protein
658	 34.63	-1	662219..662449	-	76	15902702	-	spr0658	-	hypothetical protein
659	 41.43	0	662455..663615	+	386	15902703	livJ	spr0659	-	branched chain amino acid ABC transporter amino acid-binding protein
660	 43.12	0	663874..664752	+	292	15902704	livH	spr0660	-	branched chain amino acid ABC transporter permease
661	 40.75	0	664756..665712	+	318	15902705	livM	spr0661	-	branched chain amino acid ABC transporter permease
662	 38.82	0	665712..666476	+	254	15902706	livG	spr0662	-	branched chain amino acid ABC transporter ATP-binding protein
663	 41.35	0	666476..667186	+	236	15902707	livF	spr0663	-	branched chain amino acid ABC transporter ATP-binding protein
664	 37.75	0	667600..668256	+	218	15902708	-	spr0664	-	acetoin utilization protein AcuB, putative
665	 42.63	0	668470..669459	+	329	15902709	prfB	spr0665	-	peptide chain release factor 2
666	 41.13	0	669477..670169	+	230	15902710	ftsE	spr0666	-	ABC transporter ATP-binding protein & cell division protein
667	 37.47	0	670099..671088	+	329	15902711	ftsX	spr0667	-	cell division ABC transporter, permease protein FtsX
668	 41.31	0	671374..673554	+	726	15902712	ptsG	spr0668	-	PTS system, IIABC components
669	 40.81	0	673606..674421	+	271	15902713	-	spr0669	-	hypothetical protein
670	 40.48	0	674561..675904	+	447	15902714	rheB	spr0670	-	ATP-dependent RNA helicase
671	 44.00	0	676119..677309	+	396	15902715	metK	spr0671	-	S-adenosylmethionine synthetase
672	 42.84	0	677862..678797	+	311	15902716	pyrDA	spr0672	-	dihydroorotate dehydrogenase 1A
673	 38.82	0	678831..679868	+	345	15902717	holA	spr0673	-	DNA polymerase III subunit delta
674	 43.23	0	680041..680646	+	201	15902718	sodA	spr0674	-	superoxide dismutase, manganese-dependent
675	 39.55	0	680803..681333	+	176	15902719	-	spr0675	-	hypothetical protein
676	 42.45	0	681354..682439	+	361	15902720	-	spr0676	-	hypothetical protein
677	 36.11	0	682441..682908	+	155	15902721	-	spr0677	-	hypothetical protein
678	 44.03	0	682910..684451	+	513	15902722	ABC-NBD	spr0678	-	ABC transporter ATP-binding protein
679	 43.41	0	684508..685311	-	267	15902723	ppiA	spr0679	-	peptidyl-prolyl cis-trans isomerase, cyclophilin-type
680	 35.59	0	685395..685616	-	73	15902724	-	spr0680	-	hypothetical protein
681	 36.80	0	685504..685734	-	76	15902725	-	spr0681	-	hypothetical protein
682	 39.93	0	686482..686754	+	90	15902726	rpsP	spr0682	-	30S ribosomal protein S16
683	 36.25	0	686774..687013	+	79	15902727	-	spr0683	-	hypothetical protein
684	 35.15	-1	687578..688018	+	146	15902728	-	spr0684	-	hypothetical protein
685	 33.33	-1	688019..688378	+	119	15902729	-	spr0685	-	hypothetical protein
686	 40.27	0	688409..688927	+	172	15902730	rimM	spr0686	-	16S rRNA-processing protein
687	 42.92	0	688917..689636	+	239	15902731	trmD	spr0687	-	tRNA (guanine-N(1)-)-methyltransferase
688	 37.76	0	689648..689986	+	112	15902732	-	spr0688	-	hypothetical protein
689	 38.94	0	690017..690337	-	106	15902733	-	spr0689	-	hypothetical protein
690	 38.33	0	690411..690650	+	79	15902734	-	spr0690	-	hypothetical protein
691	 44.51	+1	690854..691390	-	178	15902735	bioY	spr0691	-	biotin synthase
692	 43.95	0	691587..692933	-	448	15902736	gor	spr0692	-	glutathione reductase
693	 42.50	0	693198..694397	+	399	15902737	-	spr0693	-	hypothetical protein
694	 41.45	0	694381..695082	+	233	15902738	ABC-NBD	spr0694	-	ABC transporter ATP-binding protein - unknown substrate
695	 40.00	0	695084..696343	+	419	15902739	-	spr0695	-	hypothetical protein
696	 42.29	0	696467..698464	+	665	161410751	metG	spr0696	-	methionyl-tRNA synthetase
697	 40.43	0	698792..699115	+	107	15902741	-	spr0697	-	hypothetical protein
698	 37.44	0	699119..699994	+	291	15902742	-	spr0698	-	hypothetical protein
699	 36.34	0	700006..700935	+	309	15902743	-	spr0699	-	hypothetical protein
700	 41.47	0	701014..701271	+	85	15902744	-	spr0700	-	hypothetical protein
701	 44.78	+1	701264..701962	+	232	15902745	fabG	spr0701	-	3-ketoacyl-(acyl-carrier-protein) reductase
702	 39.38	0	701973..702452	+	159	15902746	-	spr0702	-	MutT/nudix family protein
703	 32.92	-1	702460..703188	+	242	15902747	-	spr0703	-	hypothetical protein
704	 35.62	0	703224..704099	+	291	15902748	-	spr0704	-	hypothetical protein
705	 42.40	0	704074..704514	+	146	15902749	-	spr0705	-	hypothetical protein
706	 44.29	0	704637..707183	+	848	15902750	pepN	spr0706	-	aminopeptidase N
707	 37.25	0	707226..707966	+	246	15902751	ciaR	spr0707	-	DNA-binding response regulator CiaR
708	 38.50	0	707956..709290	+	444	15902752	ciaH	spr0708	-	sensor histidine kinase CiaH
709	 34.38	-1	709324..709611	-	95	15902753	-	spr0709	-	hypothetical protein
710	 40.52	0	709610..710680	+	356	15902754	-	spr0710	-	hypothetical protein
711	 40.23	0	710880..713330	+	816	15902755	dinG	spr0711	-	bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon
712	 39.97	0	713340..714590	+	416	15902756	rodA	spr0712	-	rod shape-determining protein RodA, putative
713	 43.60	0	714601..715155	+	184	15902757	thiJ	spr0713	-	4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis protein, putative
714	 37.52	0	715231..715803	+	190	15902758	gph	spr0714	-	phosphoglycolate phosphatase
715	 42.78	0	715818..717764	+	648	15902759	gyrB	spr0715	-	DNA gyrase subunit B
716	 36.18	0	717819..719573	+	584	15902760	ezrA	spr0716	-	septation ring formation regulator EzrA
717	 39.51	0	720316..720720	+	134	15902761	transposase_C	spr0717	-	transposase
718	 38.53	0	720608..721261	+	217	15902762	transposase_D	spr0718	-	transposase
719	 42.22	0	721347..721526	-	59	15902763	transposase_E	spr0719	-	transposase
720	 37.00	0	721895..722194	-	99	15902764	-	spr0720	-	hypothetical protein
721	 39.48	0	722359..722781	-	140	15902765	-	spr0721	-	MutT/nudix family protein
722	 36.49	0	722874..723221	+	115	15902766	transposase_A	spr0722	-	transposase
723	 44.05	0	723400..723483	+	27	15902767	transposase_B	spr0723	-	degenerate transposase
724	 36.72	0	723532..723708	+	58	15902768	transposase_B	spr0724	-	degenerate transposase
725	 43.43	0	723946..726204	-	752	15902769	clpE	spr0725	-	ATP dependent protease
726	 41.56	0	726433..726663	-	76	15902770	-	spr0726	-	hypothetical protein
727	 39.28	0	726847..727536	+	229	15902771	glnP	spr0727	-	amino acid ABC transporter permease
728	 43.27	0	727536..728270	+	244	15902772	glnQ	spr0728	-	amino acid ABC transporter ATP-binding protein
729	 45.17	+1	728361..729281	+	306	15902773	folD	spr0729	-	methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase
730	 43.87	0	729423..730295	+	290	15902774	-	spr0730	-	hypothetical protein
731	 43.05	0	730520..731260	+	246	15902775	rpiA	spr0731	-	ribose-5-phosphate isomerase A
732	 42.20	0	731211..732485	+	424	15902776	deoB	spr0732	-	phosphopentomutase
733	 41.36	0	732487..732897	+	136	15902777	-	spr0733	-	hypothetical protein
734	 44.20	0	733045..733854	+	269	15902778	pnp	spr0734	-	purine nucleoside phosphorylase
735	 38.44	0	734318..735061	+	247	15902779	-	spr0735	-	hypothetical protein
736	 39.22	0	735107..735310	+	67	15902780	-	spr0736	-	hypothetical protein
737	 41.52	0	735335..735847	+	170	15902781	-	spr0737	-	hemolysin-related protein
738	 42.48	0	736505..737215	+	236	15902782	deoD	spr0738	-	purine nucleoside phosphorylase (inosine phosphorylase)
739	 38.67	0	737238..737762	-	174	15902783	flaR	spr0739	-	topology modulation protein
740	 38.40	0	737815..738051	-	78	161410750	rpsT	spr0740	-	30S ribosomal protein S20
741	 38.38	0	738119..739069	-	316	15902785	coaA	spr0741	-	pantothenate kinase
742	 33.56	-1	739237..739677	+	146	15902786	-	spr0742	-	hypothetical protein
743	 39.93	0	739884..740474	+	196	15902787	-	spr0743	-	hypothetical protein
744	 42.96	0	740471..741748	+	425	15902788	pdp	spr0744	-	pyrimidine-nucleoside phosphorylase
745	 41.63	0	741766..742428	+	220	15902789	deoC	spr0745	-	deoxyribose-phosphate aldolase
746	 41.54	0	742415..742804	+	129	15902790	cdd	spr0746	-	cytidine deaminase
39.86	MEAN

4.53	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.