IslandPathversion 1.0

IslandPath Analysis: Streptococcus pneumoniae R6



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.86 STD DEV: 4.53
Streptococcus pneumoniae R6, complete genome - 1..2038615
2043 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
298	 39.14	0	298847..299914	+	355	15902342	regR	spr0298	-	GalR family transcription regulator
299	 39.39	0	300143..300406	-	87	15902343	-	spr0299	-	hypothetical protein
300	 32.10	-1	300360..300602	-	80	15902344	-	spr0300	-	hypothetical protein
301	 44.10	0	300618..300812	-	64	15902345	yorfE	spr0301	-	transcriptional regulator
302	 43.85	0	300978..301928	+	316	15902346	mraW	spr0302	-	S-adenosyl-methyltransferase MraW
303	 35.85	0	301940..302257	+	105	15902347	ftsL	spr0303	-	cell division protein FtsL
304	 42.61	0	302261..304513	+	750	15902348	pbpX	spr0304	-	penicillin-binding protein 2X
305	 41.28	0	304515..305495	+	326	15902349	mraY	spr0305	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
306	 31.72	-1	305635..305820	+	61	15902350	-	spr0306	-	hypothetical protein
307	 43.21	0	306052..308157	+	701	15902351	clpL	spr0307	-	ATP-dependent protease ATP-binding subunit
308	 45.76	+1	308453..308935	-	160	15902352	luxS	spr0308	-	S-ribosylhomocysteinase
309	 43.84	0	309030..310514	-	494	15902353	-	spr0309	-	hypothetical protein
310	 42.48	0	310667..312274	+	535	15902354	dexB	spr0310	-	glucan 1,6-alpha-glucosidase
311	 37.36	0	312433..312606	+	57	15902355	-	spr0311	-	hypothetical protein
312	 36.42	0	312599..312760	-	53	15902356	transposase_B	spr0312	-	degenerate transposase
313	 35.63	0	313115..313462	-	115	15902357	transposase_A	spr0313	-	transposase
314	 36.86	0	313695..314657	+	320	15902358	cps2A	spr0314	-	hypothetical protein
315	 28.79	-2	314551..315585	+	344	15902359	cps2H	spr0315	-	hypothetical protein
316	 29.53	-2	315715..316872	+	385	15902360	cps2I	spr0316	-	hypothetical protein
317	 26.38	-2	316869..318278	+	469	15902361	cps2J	spr0317	-	hypothetical protein
318	 36.56	0	318314..319552	+	412	15902362	cps2K	spr0318	-	hypothetical protein
319	 37.29	0	319581..320186	+	201	15902363	cps2P	spr0319	-	hypothetical protein
320	 42.87	0	320264..321133	+	289	15902364	cps2L	spr0320	-	hypothetical protein
321	 41.41	0	321134..321727	+	197	15902365	cps2M	spr0321	-	hypothetical protein
322	 42.29	0	321740..322789	+	349	15902366	cpsN	spr0322	-	dTDP-glucose-4,6-dehydratase
323	 41.31	0	322855..323706	+	283	15902367	cpsO	spr0323	-	dTDP-L-rhamnose synthase
324	 42.51	0	323782..324228	+	148	15902368	transposase_G-truncation	spr0324	-	hypothetical protein
325	 43.56	0	324231..324680	+	149	15902369	-	spr0325	-	hypothetical protein
326	 35.22	-1	324751..324909	+	52	15902370	-	spr0326	-	hypothetical protein
327	 39.79	0	325111..327093	+	660	15902371	aliA	spr0327	-	ABC transporter substrate-binding protein - oligopeptide transport
328	 42.70	0	327393..332696	+	1767	15902372	-	spr0328	-	cell wall surface anchor family protein
329	 43.29	0	332863..335022	-	719	15902373	pbpA	spr0329	-	penicillin-binding protein 1A
330	 37.52	0	335019..335615	-	198	15902374	recU	spr0330	-	Holliday junction-specific endonuclease
331	 35.98	0	335681..336208	+	175	15902375	-	spr0331	-	hypothetical protein
332	 36.55	0	336266..336607	+	113	15902376	-	spr0332	-	hypothetical protein
333	 43.99	0	337078..338250	+	390	15902377	-	spr0333	-	hypothetical protein
334	 40.50	0	338263..339657	+	464	15902378	-	spr0334	-	hypothetical protein
335	 43.02	0	339733..341157	+	474	15902379	gnd	spr0335	-	6-phosphogluconate dehydrogenase
336	 42.17	0	341169..341858	+	229	15902380	csrR	spr0336	-	DNA-binding response regulator
337	 36.97	0	341956..342972	+	338	15902381	cbpF	spr0337	-	choline-binding protein F
338	 45.96	+1	343094..343972	+	292	15902382	mvk	spr0338	-	mevalonate kinase
339	 43.48	0	343873..344907	+	344	15902383	mvd1	spr0339	-	diphosphomevalonate decarboxylase
340	 43.45	0	344894..345901	+	335	15902384	mvaK2	spr0340	-	phosphomevalonate kinase
341	 44.02	0	345885..346895	+	336	15902385	fni	spr0341	-	isopentenyl pyrophosphate isomerase
342	 39.20	0	346973..347671	+	232	15902386	-	spr0342	-	hypothetical protein
343	 43.17	0	347668..348663	+	331	15902387	hk03	spr0343	-	sensor histidine kinase, putative
344	 46.76	+1	348677..349309	+	210	15902388	rr03	spr0344	-	DNA-binding response regulator
345	 36.73	0	349310..349456	+	48	15902389	alkD-truncation	spr0345	-	DNA alkylation repair enzyme, truncation
346	 42.35	0	349534..349788	+	84	15902390	alkD-truncation	spr0346	-	DNA alkylation repair enzyme, truncation
347	 36.63	0	349807..350079	+	90	15902391	alkD-truncation	spr0347	-	DNA alkylation repair enzyme, truncation
348	 33.85	-1	350229..350423	+	64	15902392	-	spr0348	-	hypothetical protein
349	 33.64	-1	350465..351121	+	218	15902393	cbpG-truncation	spr0349	-	choline binding protein G, truncation
350	 36.43	0	351246..351374	+	42	15902394	cbpG	spr0350	-	choline binding protein G
351	 40.56	0	351393..352277	+	294	15902395	pcpC	spr0351	-	choline-binding protein
352	 32.26	-1	352405..352590	-	61	15902396	IS861-truncation	spr0352	-	degenerate transposase (orf2)
353	 37.29	0	352538..352891	-	117	15902397	IS861-truncation	spr0353	-	degenerate transposase (orf2)
354	 38.10	0	353009..353113	-	34	15902398	IS861-truncation	spr0354	-	degenerate transposase (orf2)
355	 28.62	-2	353339..353614	-	91	15902399	IS861-truncation	spr0355	-	degenerate transposase (orf1)
356	 40.79	0	353760..355529	+	589	15902400	mtlA	spr0356	-	PTS system, mannitol-specific IIBC components
357	 35.33	-1	355553..357508	+	651	15902401	-	spr0357	-	transcriptional regulator
358	 36.07	0	357510..357947	+	145	15902402	mtlF	spr0358	-	mannitol-specific enzyme IIA component
359	 36.85	0	358009..359145	+	378	15902403	mtlD	spr0359	-	mannitol-1-phosphate 5-dehydrogenase
360	 33.96	-1	359316..359474	+	52	15902404	-	spr0360	-	hypothetical protein
361	 35.96	0	359527..359640	+	37	15902405	-	spr0361	-	hypothetical protein
362	 41.04	0	359944..361227	+	427	15902406	tig	spr0362	-	trigger factor
363	 44.66	+1	361275..363641	-	788	15902407	recD	spr0363	-	exonuclease V
364	 43.41	0	363875..364489	-	204	15902408	spi	spr0364	-	signal peptidase I
365	 45.02	+1	364501..365373	-	290	15902409	rnhB	spr0365	-	ribonuclease HIII
366	 38.78	0	365451..365762	+	103	15902410	-	spr0366	-	hypothetical protein
367	 42.44	0	365759..366307	+	182	15902411	-	spr0367	-	hypothetical protein
368	 45.23	+1	366411..368747	+	778	15902412	mutS2	spr0368	-	MutS2 family protein
369	 45.43	+1	369089..370411	+	440	15902413	dagA	spr0369	-	sodium:alanine symporter family protein
370	 43.53	0	370629..371177	+	182	15902414	mip	spr0370	-	hypothetical protein
371	 42.11	0	371275..372186	+	303	15902415	shetA	spr0371	-	exfoliative toxin, putative
372	 44.16	0	372211..373485	-	424	161410754	serS	spr0372	-	seryl-tRNA synthetase
373	 41.94	0	373698..374069	-	123	15902417	-	spr0373	-	hypothetical protein
374	 42.64	0	374072..375436	-	454	15902418	lysC	spr0374	-	aspartate kinase
375	 43.13	0	375761..376546	+	261	15902419	phaB	spr0375	-	enoyl-CoA hydratase
376	 39.54	0	376640..377074	+	144	15902420	-	spr0376	-	hypothetical protein
377	 43.18	0	377074..378048	+	324	15902421	fabH	spr0377	-	3-oxoacyl-(acyl carrier protein) synthase III
378	 35.56	0	378108..378332	+	74	15902422	acpP	spr0378	-	acyl carrier protein
379	 44.10	0	378451..379425	+	324	15902423	fabK	spr0379	-	enoyl-acyl carrier protein(ACP) reductase
380	 45.71	+1	379418..380338	+	306	15902424	fabD	spr0380	-	acyl-carrier-protein S-malonyltransferase
381	 41.80	0	380372..381103	+	243	15902425	fabG	spr0381	-	3-ketoacyl-(acyl-carrier-protein) reductase
382	 42.33	0	381116..382360	+	414	15902426	fabF	spr0382	-	3-oxoacyl-(acyl carrier protein) synthase II
383	 43.00	0	382363..382848	+	161	15902427	accB	spr0383	-	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit
384	 43.97	0	382845..383267	+	140	15902428	fabZ	spr0384	-	(3R)-hydroxymyristoyl-ACP dehydratase
385	 42.84	0	383279..384646	+	455	15902429	accC	spr0385	-	acetyl-CoA carboxylase biotin carboxylase subunit
386	 43.83	0	384683..385549	+	288	15902430	accD	spr0386	-	acetyl-CoA carboxylase subunit beta
387	 45.31	+1	385546..386313	+	255	15902431	accA	spr0387	-	acetyl-CoA carboxylase subunit alpha
388	 39.78	0	386472..386657	+	61	15902432	-	spr0388	-	hypothetical protein
389	 37.09	0	386914..387126	+	70	15902433	-	spr0389	-	hypothetical protein
390	 43.54	0	387424..387864	-	146	15902434	nusB	spr0390	-	transcription antitermination protein NusB
391	 42.31	0	387839..388228	-	129	15902435	-	spr0391	-	hypothetical protein
392	 41.00	0	388250..388810	-	186	15902436	efp	spr0392	-	elongation factor P
393	 45.67	+1	388939..390381	-	480	15902437	gatB	spr0393	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
394	 45.33	+1	390381..391847	-	488	15902438	gatA	spr0394	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
395	 45.87	+1	391847..392149	-	100	15902439	gatC	spr0395	-	aspartyl/glutamyl-tRNA amidotransferase subunit C
396	 45.76	+1	392362..393906	+	514	15902440	prfC	spr0396	-	peptide chain release factor 3
397	 34.98	-1	394175..394660	+	161	15902441	-	spr0397	-	hypothetical protein
39.86	MEAN

4.53	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.