IslandPath Analysis: Streptococcus pneumoniae R6



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 39.86   STD DEV: 4.53
Streptococcus pneumoniae R6, complete genome - 1..2038615
2043 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
230	 36.89	0	220809..221117	+	102	15902274	PTS-EIIB	spr0230	-	PTS system, IIB component
231	 35.90	0	221110..222432	+	440	15902275	PTS-EIIC	spr0231	-	PTS system, IIC component
232	 36.36	0	222574..225021	+	815	15902276	pflF	spr0232	-	formate acetyltransferase 3
233	 36.77	0	225040..225708	+	222	15902277	talC	spr0233	-	fructose-6-phosphate aldolase
234	 36.55	0	225726..226814	+	362	15902278	gldA	spr0234	-	glycerol dehydrogenase
235	 44.60	+1	227269..229770	+	833	15902279	leuS	spr0235	-	leucyl-tRNA synthetase
236	 44.68	+1	229964..230659	+	231	15902280	-	spr0236	-	hypothetical protein
237	 39.57	0	230671..231087	+	138	15902281	-	spr0237	-	hypothetical protein
238	 45.75	+1	232128..233126	+	332	15902282	ruvB	spr0238	-	Holliday junction DNA helicase B
239	 37.17	0	233107..233679	+	190	15902283	-	spr0239	-	hypothetical protein
240	 43.63	0	233892..234668	+	258	15902284	uppS	spr0240	-	undecaprenyl diphosphate synthase
241	 41.67	0	234677..235480	+	267	15902285	cdsA	spr0241	-	phosphatidate cytidylyltransferase
242	 42.54	0	235502..236761	+	419	15902286	eep	spr0242	-	determinant for enhanced expression of pheromone
243	 43.04	0	236774..238627	+	617	15902287	proS	spr0243	-	prolyl-tRNA synthetase
244	 42.97	0	238727..240106	+	459	15902288	bglA	spr0244	-	6-phospho-beta-glucosidase
245	 44.50	+1	240298..242106	+	602	15902289	glmS	spr0245	-	D-fructose-6-phosphate amidotransferase
246	 46.19	+1	242225..243274	+	349	15902290	-	spr0246	-	hypothetical protein
247	 43.12	0	243374..247144	-	1256	15902291	pulA	spr0247	-	alkaline amylopullulanase
248	 43.24	0	247561..247974	+	137	15902292	rpsL	spr0248	-	30S ribosomal protein S12
249	 44.37	0	247994..248464	+	156	15902293	rpsG	spr0249	-	30S ribosomal protein S7
250	 43.28	0	248889..250970	+	693	15902294	fusA	spr0250	-	elongation factor G
251	 44.47	+1	251074..255465	+	1463	15902295	polC	spr0251	-	DNA polymerase III PolC
252	 39.77	0	255567..255830	+	87	15902296	-	spr0252	-	hypothetical protein
253	 35.84	0	255823..256101	+	92	15902297	-	spr0253	-	hypothetical protein
254	 46.62	+1	256296..257537	+	413	15902298	pepS	spr0254	-	aminopeptidase PepS
255	 43.72	0	257547..257777	+	76	15902299	-	spr0255	-	hypothetical protein
256	 44.67	+1	258090..258812	+	240	15902300	rsuA	spr0256	-	ribosomal small subunit pseudouridine synthase A
257	 34.55	-1	258893..259057	+	54	15902301	-	spr0257	-	hypothetical protein
258	 43.67	0	259029..260363	+	444	15902302	pepC	spr0258	-	aminopeptidase C
259	 41.12	0	260419..261330	-	303	15902303	manN	spr0259	-	phosphotransferase system, mannose-specific EIID
260	 47.64	+1	261354..262157	-	267	15902304	manM	spr0260	-	PTS system, mannose-specific IIC component
261	 42.44	0	262185..263183	-	332	15902305	manL	spr0261	-	PTS system, mannose-specific IIAB components
262	 45.98	+1	263358..264377	-	339	15902306	adhP	spr0262	-	alcohol dehydrogenase
263	 40.47	0	264716..265528	-	270	15902307	-	spr0263	-	Cof family protein
264	 40.80	0	265664..267136	+	490	15902308	-	spr0264	-	xanthine/uracil permease family protein
265	 38.82	0	267187..267897	+	236	15902309	-	spr0265	-	hypothetical protein
266	 46.35	+1	268022..268966	+	314	15902310	sulA	spr0266	-	dihydropteroate synthase
267	 46.11	+1	268968..270290	+	440	15902311	sulB	spr0267	-	dihydrofolate synthetase
268	 43.06	0	270271..270825	+	184	15902312	folE	spr0268	-	GTP cyclohydrolase I
269	 45.02	+1	270868..271680	+	270	15902313	sulD	spr0269	-	bifunctional folate synthesis protein
270	 37.90	0	271725..272096	-	123	15902314	-	spr0270	-	hypothetical protein
271	 39.82	0	272399..272845	+	148	15902315	rplM	spr0271	-	50S ribosomal protein L13
272	 45.04	+1	272865..273257	+	130	15902316	rpsI	spr0272	-	30S ribosomal protein S9
273	 38.65	0	273609..273815	+	68	15902317	transposase_B	spr0273	-	degenerate transposase
274	 25.81	-2	273803..273895	+	30	15902318	bglB-truncation	spr0274	-	phospho-beta-glucosidase, truncation
275	 31.97	-1	273944..274309	+	121	15902319	-	spr0275	-	hypothetical protein
276	 35.63	0	274499..275935	+	478	15902320	celA	spr0276	-	6-phospho-beta-glucosidase
277	 31.25	-1	275987..276226	+	79	15902321	-	spr0277	-	hypothetical protein
278	 36.19	0	276356..276670	+	104	161410755	celB	spr0278	-	cellobiose phosphotransferase system IIB component
279	 31.36	-1	276788..278767	+	659	15902323	bglG	spr0279	-	BigG family transcription antiterminator
280	 34.29	-1	278777..279091	+	104	15902324	celC	spr0280	-	cellobiose phosphotransferase system IIA component
281	 28.99	-2	279110..279616	+	168	15902325	-	spr0281	-	hypothetical protein
282	 37.94	0	279696..281042	+	448	15902326	celD	spr0282	-	cellobiose phosphotransferase system IIC component
283	 36.16	0	281424..281600	+	58	15902327	-	spr0283	-	hypothetical protein
284	 35.82	0	282002..284215	+	737	15902328	xylS	spr0284	-	Alpha-xylosidase
285	 42.77	0	284437..284913	-	158	15902329	basA	spr0285	-	glutathione peroxidase
286	 39.98	0	285103..288339	+	1078	15902330	hysA	spr0286	-	hyaluronate lyase precursor (hyaluronidase/hyase)
287	 45.08	+1	289483..290112	-	209	15902331	kdgA	spr0287	-	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase
288	 42.71	0	290122..291123	-	333	15902332	kdgK	spr0288	-	2-keto-3-deoxygluconate kinase
289	 41.12	0	291154..291795	-	213	15902333	-	spr0289	-	hypothetical protein
290	 44.12	0	291814..292629	-	271	15902334	gno	spr0290	-	gluconate 5-dehydrogenase
291	 39.08	0	292900..293334	+	144	15902335	PTS-EII	spr0291	-	PTS system, IIA component
292	 41.06	0	293346..294536	+	396	15902336	ugl	spr0292	-	glucuronyl hydrolase
293	 40.85	0	294547..295038	+	163	15902337	PTS-EII	spr0293	-	PTS system, IIB component
294	 41.67	0	295053..295832	+	259	15902338	PTS-EII	spr0294	-	PTS system, IIC component
295	 39.07	0	295819..296637	+	272	15902339	PTS-EII	spr0295	-	PTS system, IID component
296	 37.41	0	296637..296930	+	97	15902340	-	spr0296	-	preprotein translocase, YajC subunit
297	 40.17	0	296952..298853	+	633	15902341	-	spr0297	-	hypothetical protein
298	 39.14	0	298847..299914	+	355	15902342	regR	spr0298	-	GalR family transcription regulator
299	 39.39	0	300143..300406	-	87	15902343	-	spr0299	-	hypothetical protein
300	 32.10	-1	300360..300602	-	80	15902344	-	spr0300	-	hypothetical protein
301	 44.10	0	300618..300812	-	64	15902345	yorfE	spr0301	-	transcriptional regulator
302	 43.85	0	300978..301928	+	316	15902346	mraW	spr0302	-	S-adenosyl-methyltransferase MraW
303	 35.85	0	301940..302257	+	105	15902347	ftsL	spr0303	-	cell division protein FtsL
304	 42.61	0	302261..304513	+	750	15902348	pbpX	spr0304	-	penicillin-binding protein 2X
305	 41.28	0	304515..305495	+	326	15902349	mraY	spr0305	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
306	 31.72	-1	305635..305820	+	61	15902350	-	spr0306	-	hypothetical protein
307	 43.21	0	306052..308157	+	701	15902351	clpL	spr0307	-	ATP-dependent protease ATP-binding subunit
308	 45.76	+1	308453..308935	-	160	15902352	luxS	spr0308	-	S-ribosylhomocysteinase
309	 43.84	0	309030..310514	-	494	15902353	-	spr0309	-	hypothetical protein
310	 42.48	0	310667..312274	+	535	15902354	dexB	spr0310	-	glucan 1,6-alpha-glucosidase
311	 37.36	0	312433..312606	+	57	15902355	-	spr0311	-	hypothetical protein
312	 36.42	0	312599..312760	-	53	15902356	transposase_B	spr0312	-	degenerate transposase
313	 35.63	0	313115..313462	-	115	15902357	transposase_A	spr0313	-	transposase
314	 36.86	0	313695..314657	+	320	15902358	cps2A	spr0314	-	hypothetical protein
315	 28.79	-2	314551..315585	+	344	15902359	cps2H	spr0315	-	hypothetical protein
316	 29.53	-2	315715..316872	+	385	15902360	cps2I	spr0316	-	hypothetical protein
317	 26.38	-2	316869..318278	+	469	15902361	cps2J	spr0317	-	hypothetical protein
318	 36.56	0	318314..319552	+	412	15902362	cps2K	spr0318	-	hypothetical protein
319	 37.29	0	319581..320186	+	201	15902363	cps2P	spr0319	-	hypothetical protein
320	 42.87	0	320264..321133	+	289	15902364	cps2L	spr0320	-	hypothetical protein
321	 41.41	0	321134..321727	+	197	15902365	cps2M	spr0321	-	hypothetical protein
322	 42.29	0	321740..322789	+	349	15902366	cpsN	spr0322	-	dTDP-glucose-4,6-dehydratase
323	 41.31	0	322855..323706	+	283	15902367	cpsO	spr0323	-	dTDP-L-rhamnose synthase
324	 42.51	0	323782..324228	+	148	15902368	transposase_G-truncation	spr0324	-	hypothetical protein
325	 43.56	0	324231..324680	+	149	15902369	-	spr0325	-	hypothetical protein
326	 35.22	-1	324751..324909	+	52	15902370	-	spr0326	-	hypothetical protein
327	 39.79	0	325111..327093	+	660	15902371	aliA	spr0327	-	ABC transporter substrate-binding protein - oligopeptide transport
328	 42.70	0	327393..332696	+	1767	15902372	-	spr0328	-	cell wall surface anchor family protein
329	 43.29	0	332863..335022	-	719	15902373	pbpA	spr0329	-	penicillin-binding protein 1A
39.86	MEAN

4.53	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.