IslandPathversion 1.0

IslandPath Analysis: Streptococcus pneumoniae R6



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.86 STD DEV: 4.53
Streptococcus pneumoniae R6, complete genome - 1..2038615
2043 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1759	 39.86	0	1729172..1729615	-	147	15903803	-	spr1761	-	hypothetical protein
1760	 35.27	-1	1729701..1730321	-	206	15903804	-	spr1762	-	hypothetical protein
1761	 33.10	-1	1730704..1731567	-	287	15903805	plcR	spr1763	-	transcriptional activator
1762	 32.75	-1	1731759..1731929	+	56	15903806	-	spr1764	-	hypothetical protein
1763	 38.22	0	1732032..1732256	+	74	15903807	-	spr1765	-	hypothetical protein
1764	 34.39	-1	1732263..1732451	+	62	15903808	-	spr1766	-	hypothetical protein
1765	 29.09	-2	1732567..1735557	+	996	15903809	cylM	spr1767	-	bacteriocin formation protein, putative
1766	 31.06	-1	1735907..1736611	+	234	15903810	-	spr1768	-	hypothetical protein
1767	 27.20	-2	1736592..1737521	+	309	15903811	-	spr1769	-	hypothetical protein
1768	 28.31	-2	1737518..1739626	+	702	15903812	clyB	spr1770	-	toxin secretion ABC transporter, ATP-binding/permease protein
1769	 29.48	-2	1739650..1741389	+	579	15903813	nisP	spr1771	-	subtilisin-like serine protease
1770	 39.58	0	1741440..1742207	+	255	15903814	-	spr1772	-	hypothetical protein
1771	 40.60	0	1742209..1742841	+	210	15903815	ABC-NBD	spr1773	-	ABC transporter ATP-binding protein - unknown substrate
1772	 28.40	-2	1742999..1743160	+	53	15903816	-	spr1774	-	hypothetical protein
1773	 42.03	0	1743787..1744200	-	137	15903817	ndk	spr1775	-	nucleoside diphosphate kinase
1774	 46.19	+1	1744311..1747988	-	1225	15903818	rpoC	spr1776	-	DNA-directed RNA polymerase subunit beta'
1775	 44.51	+1	1748021..1751671	-	1216	15903819	rpoB	spr1777	-	DNA-directed RNA polymerase subunit beta
1776	 40.17	0	1752316..1753647	-	443	15903820	hlyX	spr1778	-	hemolysin
1777	 43.64	0	1753876..1754700	-	274	15903821	endA	spr1779	-	DNA-entry nuclease
1778	 38.65	0	1754739..1754945	-	68	15903822	epuA	spr1780	-	hypothetical protein
1779	 46.81	+1	1754920..1756203	-	427	15903823	murA	spr1781	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
1780	 41.71	0	1756515..1757552	-	345	15903824	-	spr1782	-	hypothetical protein
1781	 39.47	0	1757536..1758024	-	162	15903825	coaD	spr1783	-	phosphopantetheine adenylyltransferase
1782	 45.00	+1	1758014..1758553	-	179	15903826	-	spr1784	-	type II DNA modification (methyltransferase
1783	 43.34	0	1758618..1759616	-	332	15903827	asnA	spr1785	-	asparagine synthetase AsnA
1784	 29.01	-2	1759587..1759748	+	53	15903828	-	spr1786	-	hypothetical protein
1785	 42.80	0	1759722..1760429	-	235	15903829	-	spr1787	-	hypothetical protein
1786	 41.50	0	1760461..1761219	-	252	15903830	yjfA	spr1788	-	rRNA/tRNA methylase
1787	 43.01	0	1761235..1761513	+	92	15903831	acyP	spr1789	-	acylphosphate phosphohydrolase
1788	 44.23	0	1761591..1762517	+	308	15903832	-	spr1790	-	OxaA-like protein precursor
1789	 44.15	0	1762592..1763386	-	264	15903833	pflC	spr1791	-	pyruvate-formate lyase activating enzyme
1790	 45.16	+1	1763512..1764762	-	416	15903834	lysA	spr1792	-	diaminopimelate decarboxylase
1791	 42.27	0	1764829..1765656	-	275	15903835	purR	spr1793	-	purine operon repressor
1792	 44.78	+1	1765923..1766927	-	334	15903836	cbf1	spr1794	-	cmp-binding-factor 1
1793	 45.88	+1	1766854..1768152	-	432	15903837	-	spr1795	-	hypothetical protein
1794	 44.88	+1	1768112..1768795	-	227	15903838	-	spr1796	-	hypothetical protein
1795	 44.90	+1	1768737..1769393	-	218	15903839	rpe	spr1797	-	ribulose-phosphate 3-epimerase
1796	 43.57	0	1769404..1770282	-	292	15903840	-	spr1798	-	ribosome-associated GTPase
1797	 46.39	+1	1770284..1771156	-	290	15903841	ksgA	spr1799	-	dimethyladenosine transferase
1798	 40.00	0	1771287..1771601	-	104	15903842	-	spr1800	-	hypothetical protein
1799	 39.41	0	1771588..1772229	-	213	15903843	ABC-NBD	spr1801	-	ABC transporter ATP-binding protein - unknown substrate
1800	 43.37	0	1772231..1774273	-	680	15903844	-	spr1802	-	hypothetical protein
1801	 33.56	-1	1774530..1775429	-	299	15903845	plcR	spr1803	-	transcriptional regulator PlcR, putative
1802	 47.06	+1	1775501..1776061	-	186	15903846	-	spr1804	-	primase-related protein
1803	 45.48	+1	1776061..1776834	-	257	15903847	-	spr1805	-	hypothetical protein
1804	 43.99	0	1777140..1777805	-	221	15903848	-	spr1806	-	cell wall surface anchor family protein
1805	 46.67	+1	1778068..1778202	-	44	15903849	rpmH	spr1807	-	50S ribosomal protein L34
1806	 44.61	+1	1778347..1779561	-	404	15903850	aspC	spr1808	-	aminotransferase AlaT
1807	 34.63	-1	1779717..1780025	-	102	15903851	-	spr1809	-	hypothetical protein
1808	 43.80	0	1780109..1780624	+	171	15903852	-	spr1810	-	hypothetical protein
1809	 43.69	0	1780659..1782077	-	472	15903853	-	spr1811	-	Cof family protein
1810	 45.79	+1	1782113..1783075	+	320	15903854	ansB	spr1812	-	L-asparaginase, putative
1811	 40.63	0	1783327..1784367	-	346	15903855	ccpA	spr1813	-	catabolite control protein A
1812	 45.00	+1	1784762..1785361	-	199	15903856	rr11	spr1814	-	DNA-binding response regulator
1813	 38.52	0	1785363..1786460	-	365	15903857	hk11	spr1815	-	sensor histidine kinase, putative
1814	 39.58	0	1786460..1787227	-	255	15903858	-	spr1816	-	hypothetical protein
1815	 39.10	0	1787199..1788083	-	294	15903859	ABC-NBD	spr1817	-	ABC transporter ATP-binding protein
1816	 38.16	0	1788261..1788467	-	68	15903860	-	spr1818	-	hypothetical protein
1817	 37.29	0	1795146..1795625	-	159	15903861	comX2	spr1819	-	competence-specific global transcription modulator
1818	 33.70	-1	1795747..1796298	-	183	15903862	nusG	spr1820	-	transcription antitermination protein NusG
1819	 32.20	-1	1796338..1796514	-	58	15903863	secE	spr1821	-	preprotein translocase subunit SecE
1820	 41.18	0	1796524..1796676	-	50	15903864	rpmG	spr1822	-	50S ribosomal protein L33
1821	 41.39	0	1796729..1798924	-	731	15903865	pbp2a	spr1823	-	penicillin-binding protein 2A
1822	 39.61	0	1799011..1799886	+	291	15903866	rluD	spr1824	-	ribosomal large subunit pseudouridine synthase D
1823	 41.39	0	1799954..1801033	-	359	15903867	gapA	spr1825	-	glyceraldehyde-3-phosphate dehydrogenase
1824	 37.72	0	1801138..1802118	-	326	15903868	-	spr1826	-	hypothetical protein
1825	 38.27	0	1802161..1802484	-	107	15903869	transposase_B	spr1827	-	transposase
1826	 36.78	0	1802664..1803011	-	115	15903870	transposase_A	spr1828	-	transposase
1827	 41.56	0	1803124..1804023	-	299	15903871	nadC	spr1829	-	nicotinate-nucleotide pyrophosphorylase
1828	 43.71	0	1804233..1805543	+	436	15903872	-	spr1830	-	hypothetical protein
1829	 31.28	-1	1805909..1806103	-	64	15903873	-	spr1831	-	hypothetical protein
1830	 35.12	-1	1806563..1807291	-	242	15903874	-	spr1832	-	hypothetical protein
1831	 38.36	0	1807407..1808858	+	483	15903875	bgl2	spr1833	-	Beta-glucosidase
1832	 34.88	-1	1808876..1810171	+	431	15903876	ptcC	spr1834	-	PTS system, IIC component
1833	 36.57	0	1810176..1810484	+	102	15903877	ptcB	spr1835	-	PTS system, IIB component
1834	 36.09	0	1810463..1810789	+	108	15903878	ptcA	spr1836	-	PTS system, IIA component
1835	 42.46	0	1811697..1814369	-	890	15903879	adhE	spr1837	-	bifunctional acetaldehyde-CoA/alcohol dehydrogenase
1836	 38.69	0	1814648..1815058	-	136	15903880	-	spr1838	-	hypothetical protein
1837	 38.69	0	1815060..1815488	-	142	15903881	-	spr1839	-	phosphotyrosine protein phosphatase
1838	 36.00	0	1815535..1815834	-	99	15903882	yajC	spr1840	-	preprotein translocase subunit YajC
1839	 44.31	0	1815951..1817927	-	658	15903883	tktA	spr1841	-	transketolase
1840	 40.57	0	1818041..1819132	-	363	15903884	-	spr1842	-	putative L-ascorbate 6-phosphate lactonase
1841	 33.15	-1	1819244..1820917	-	557	15903885	-	spr1843	-	hypothetical protein
1842	 42.84	0	1821096..1821800	-	234	15903886	araD	spr1844	-	L-ribulose-5-phosphate 4-epimerase
1843	 40.16	0	1821802..1822665	-	287	15903887	sga	spr1845	-	putative L-xylulose 5-phosphate 3-epimerase
1844	 43.39	0	1822669..1823334	-	221	161410737	ulaD	spr1846	-	3-keto-L-gulonate-6-phosphate decarboxylase
1845	 39.92	0	1823351..1823836	-	161	15903889	PTS-EII	spr1847	-	PTS system, IIA component
1846	 37.94	0	1823913..1824194	-	93	15903890	PTS-EII	spr1848	-	PTS system, IIB component
1847	 39.92	0	1824217..1825674	-	485	161410736	ulaA	spr1849	-	ascorbate-specific PTS system enzyme IIC
1848	 42.31	0	1825805..1826428	-	207	15903892	-	spr1850	-	hypothetical protein
1849	 39.51	0	1826479..1827465	-	328	15903893	-	spr1851	-	hypothetical protein
1850	 41.52	0	1827484..1828314	-	276	15903894	-	spr1852	-	SpoIIIJ family protein
1851	 37.90	0	1828283..1828654	-	123	15903895	rnpA	spr1853	-	ribonuclease P
1852	 40.39	0	1828803..1829993	-	396	15903896	ackA	spr1854	-	acetate kinase
1853	 41.51	0	1830044..1830997	-	317	15903897	-	spr1855	-	hypothetical protein
1854	 39.63	0	1831058..1831438	-	126	15903898	-	spr1856	-	hypothetical protein
1855	 42.08	0	1831470..1831652	-	60	15903899	-	spr1857	-	hypothetical protein
1856	 38.41	0	1831789..1832202	-	137	15903900	-	spr1858	-	hypothetical protein
1857	 42.80	0	1832180..1832686	-	168	15903901	-	spr1859	-	hypothetical protein
1858	 41.61	0	1832869..1833351	-	160	15903902	cglD	spr1861	-	competence protein CglD
39.86	MEAN

4.53	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.