IslandPathversion 1.0

IslandPath Analysis: Streptococcus pneumoniae R6



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.86 STD DEV: 4.53
Streptococcus pneumoniae R6, complete genome - 1..2038615
2043 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1460	 45.91	+1	1442047..1443159	-	370	15903504	-	spr1461	-	hypothetical protein
1461	 44.24	0	1443167..1443964	-	265	15903505	-	spr1462	-	hypothetical protein
1462	 44.10	0	1443951..1444628	-	225	15903506	-	spr1463	-	hypothetical protein
1463	 46.64	+1	1444730..1447066	-	778	15903507	ctpE	spr1464	-	P-type ATPase - metal cation transport
1464	 42.14	0	1447154..1447948	+	264	15903508	-	spr1465	-	hypothetical protein
1465	 37.56	0	1448241..1448855	-	204	15903509	cadD	spr1466	-	cadmium resistance protein
1466	 41.48	0	1449589..1449858	-	89	15903510	rpsO	spr1467	-	30S ribosomal protein S15
1467	 35.71	0	1449999..1450628	-	209	15903511	-	spr1468	-	hypothetical protein
1468	 36.67	0	1450858..1451067	+	69	15903512	-	spr1469	-	hypothetical protein
1469	 41.06	0	1451432..1451638	+	68	15903513	-	spr1470	-	hypothetical protein
1470	 38.33	0	1451642..1451821	+	59	15903514	-	spr1471	-	hypothetical protein
1471	 45.42	+1	1451879..1453822	+	647	161410743	thrS	spr1472	-	threonyl-tRNA synthetase
1472	 41.03	0	1453871..1454845	-	324	15903516	hk01	spr1473	-	sensor histidine kinase
1473	 42.77	0	1454838..1455515	-	225	15903517	rr01	spr1474	-	DNA-binding response regulator
1474	 42.74	0	1455671..1456744	+	357	15903518	-	spr1475	-	hypothetical protein
1475	 30.69	-2	1456835..1457137	-	100	15903519	-	spr1476	-	hypothetical protein
1476	 43.61	0	1457206..1457643	-	145	15903520	-	spr1477	-	Rrf2 family protein
1477	 40.51	0	1457631..1457825	+	64	15903521	-	spr1478	-	hypothetical protein
1478	 46.64	+1	1457719..1458567	-	282	15903522	-	spr1479	-	hypothetical protein
1479	 43.93	0	1458673..1459323	+	216	15903523	marR	spr1480	-	iron-dependent transcriptional regulator
1480	 28.07	-2	1459304..1459474	+	56	15903524	-	spr1481	-	hypothetical protein
1481	 43.03	0	1459595..1460017	+	140	15903525	-	spr1482	-	hypothetical protein
1482	 34.02	-1	1460276..1460713	+	145	15903526	-	spr1483	-	hypothetical protein
1483	 34.67	-1	1460808..1461107	-	99	15903527	-	spr1484	-	hypothetical protein
1484	 40.71	0	1462112..1462423	+	103	15903528	-	spr1485	-	hypothetical protein
1485	 41.44	0	1462462..1462905	-	147	15903529	-	spr1486	-	D-tyrosyl-tRNA deacylase
1486	 45.61	+1	1462935..1465157	-	740	15903530	relA	spr1487	-	GTP pyrophosphokinase
1487	 36.84	0	1465305..1465475	-	56	15903531	-	spr1488	-	hypothetical protein
1488	 36.53	0	1465568..1465786	+	72	15903532	-	spr1489	-	hypothetical protein
1489	 46.55	+1	1466101..1466781	+	226	15903533	-	spr1490	-	metallo-beta-lactamase superfamily protein
1490	 44.64	+1	1466904..1468796	-	630	15903534	pepO	spr1491	-	endopeptidase O
1491	 43.15	0	1469087..1469809	+	240	15903535	psaB	spr1492	-	manganese ABC transporter, ATP-binding protein
1492	 41.93	0	1469806..1470654	+	282	15903536	psaC	spr1493	-	ABC transporter membrane-spanning permease - manganese transport
1493	 37.10	0	1470686..1471615	+	309	15903537	psaA	spr1494	-	ABC transporter substrate-binding protein - manganese transport.
1494	 43.50	0	1471738..1472229	+	163	161410742	tpx	spr1495	-	thiol peroxidase
1495	 43.82	0	1472325..1475099	-	924	15903539	-	spr1496	-	hypothetical protein
1496	 45.29	+1	1475035..1475745	-	236	15903540	ABC-NBD	spr1497	-	ABC transporter ATP-binding protein
1497	 42.99	0	1475986..1478397	-	803	15903541	-	spr1498	-	hypothetical protein
1498	 41.99	0	1478450..1479142	-	230	15903542	gpmA	spr1499	-	phosphoglyceromutase
1499	 29.10	-2	1479193..1479381	-	62	15903543	-	spr1500	-	hypothetical protein
1500	 38.30	0	1479757..1479897	-	46	15903544	-	spr1501	-	hypothetical protein
1501	 42.68	0	1480465..1483257	-	930	15903545	ileS	spr1502	-	isoleucyl-tRNA synthetase
1502	 38.89	0	1483401..1483562	-	53	15903546	-	spr1503	-	hypothetical protein
1503	 43.78	0	1483442..1483642	+	66	15903547	-	spr1504	-	hypothetical protein
1504	 39.95	0	1483605..1484405	-	266	15903548	divIVA	spr1505	-	cell division protein DivIVA
1505	 35.92	0	1484402..1485253	-	283	15903549	-	spr1506	-	hypothetical protein
1506	 42.80	0	1485184..1485447	-	87	15903550	-	spr1507	-	hypothetical protein
1507	 37.96	0	1485447..1485986	-	179	15903551	-	spr1508	-	hypothetical protein
1508	 38.84	0	1485996..1486667	-	223	15903552	-	spr1509	-	hypothetical protein
1509	 44.52	+1	1486672..1487931	-	419	15903553	ftsZ	spr1510	-	cell division protein FtsZ
1510	 43.09	0	1487948..1489321	-	457	15903554	ftsA	spr1511	-	cell division protein FtsA
1511	 39.01	0	1489540..1490244	-	234	15903555	-	spr1512	-	hypothetical protein
1512	 40.52	0	1490335..1490946	-	203	15903556	mutT	spr1513	-	MutT/nudix family protein
1513	 41.85	0	1490933..1492306	-	457	15903557	murF	spr1514	-	UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-alanyl-D-alanine ligase
1514	 44.92	+1	1492390..1493433	-	347	15903558	ddl	spr1515	-	D-alanyl-alanine synthetase A
1515	 44.05	0	1493609..1494205	-	198	15903559	recR	spr1516	-	recombination protein RecR
1516	 41.84	0	1494216..1496273	-	685	15903560	pbp2b	spr1517	-	penicillin-binding protein 2B
1517	 41.08	0	1496473..1497324	+	283	15903561	-	spr1518	-	phosphosugar-binding transcriptional regulator, putative
1518	 43.39	0	1497340..1498224	-	294	15903562	glk	spr1519	-	ROK family protein
1519	 43.17	0	1498242..1498973	-	243	15903563	npl-truncation	spr1520	-	N-acetylneuraminate lyase subunit, truncation
1520	 44.79	+1	1499064..1499159	-	31	15903564	npl-truncation	spr1521	-	N-acetylneuraminate lyase subunit, truncation
1521	 40.65	0	1499342..1499806	-	154	15903565	-	spr1522	-	hypothetical protein
1522	 38.84	0	1500093..1500437	-	114	15903566	-	spr1523	-	hypothetical protein
1523	 37.97	0	1500534..1500986	-	150	15903567	-	spr1524	-	hypothetical protein
1524	 42.38	0	1501259..1502098	-	279	15903568	ABC-MSP	spr1525	-	sugar ABC transporter, permease protein
1525	 39.80	0	1502114..1503010	-	298	15903569	ABC-MSP	spr1526	-	sugar ABC transporter, permease protein
1526	 40.33	0	1503232..1504560	-	442	15903570	ABC-SBP	spr1527	-	sugar ABC transporter, sugar-binding protein
1527	 36.86	0	1504685..1506217	-	510	15903571	PTS-EII	spr1528	-	PTS system, IIBC components
1528	 43.35	0	1506221..1506919	-	232	15903572	nanE	spr1529	-	N-acetylmannosamine-6-phosphate 2-epimerase
1529	 39.40	0	1507099..1508202	-	367	15903573	-	spr1530	-	hypothetical protein
1530	 33.38	-1	1508214..1510307	-	697	15903574	nanB	spr1531	-	sialidase B precursor (neuraminidase B)
1531	 35.97	0	1510325..1511158	-	277	15903575	ABC-MSP	spr1532	-	ABC transporter permease
1532	 37.06	0	1511158..1512042	-	294	15903576	ABC-MSP	spr1533	-	ABC transporter permease
1533	 36.02	0	1512121..1513458	-	445	15903577	ABC-SBP	spr1534	-	ABC transporter substrate-binding protein
1534	 35.10	-1	1513477..1513929	-	150	15903578	-	spr1535	-	hypothetical protein
1535	 42.63	0	1514944..1518051	-	1035	15903579	nanA	spr1536	-	sialidase A precursor (neuraminidase A)
1536	 30.26	-2	1518294..1518521	-	75	15903580	-	spr1537	-	hypothetical protein
1537	 44.85	+1	1519416..1520396	-	326	15903581	axe1	spr1538	-	acetyl xylan esterase, putative
1538	 46.78	+1	1520712..1522727	-	671	15903582	recG	spr1539	-	ATP-dependent DNA helicase RecG
1539	 45.87	+1	1522746..1523870	-	374	15903583	alr	spr1540	-	alanine racemase
1540	 46.83	+1	1523839..1524201	-	120	15903584	acpS	spr1541	-	4'-phosphopantetheinyl transferase
1541	 44.19	0	1524246..1525277	-	343	15903585	aroF	spr1542	-	phospho-2-dehydro-3-deoxyheptonate aldolase
1542	 40.99	0	1525279..1526310	-	343	15903586	aroG	spr1543	-	phospho-2-dehydro-3-deoxyheptonate aldolase
1543	 43.20	0	1526391..1528904	-	837	15903587	secA	spr1544	-	preprotein translocase subunit SecA
1544	 40.80	0	1529050..1529250	-	66	15903588	-	spr1545	-	hypothetical protein
1545	 32.72	-1	1529350..1530000	-	216	15903589	ABC-NBD	spr1546	-	ABC transporter ATP-binding protein
1546	 33.48	-1	1530004..1530681	-	225	15903590	-	spr1547	-	hypothetical protein
1547	 32.83	-1	1530638..1531429	-	263	15903591	-	spr1548	-	hypothetical protein
1548	 34.86	-1	1531451..1531843	-	130	15903592	-	spr1549	-	hypothetical protein
1549	 31.46	-1	1532170..1533021	+	283	15903593	-	spr1550	-	hypothetical protein
1550	 34.18	-1	1533243..1533596	-	117	15903594	-	spr1551	-	hypothetical protein
1551	 34.20	-1	1533733..1534077	-	114	15903595	-	spr1552	-	hypothetical protein
1552	 43.63	0	1534157..1535467	-	436	15903596	engA	spr1553	-	GTP-binding protein EngA
1553	 45.24	+1	1535481..1536194	-	237	15903597	frp	spr1554	-	nitroreductase family protein
1554	 40.58	0	1536191..1537087	-	298	15903598	dnaI	spr1555	-	primosomal protein DnaI
1555	 40.77	0	1537088..1538257	-	389	15903599	dnaB	spr1556	-	hypothetical protein
1556	 42.41	0	1538258..1538731	-	157	161410741	-	spr1557	-	transcriptional regulator NrdR
1557	 41.53	0	1538871..1539236	+	121	15903601	-	spr1558	-	hypothetical protein
1558	 41.91	0	1539214..1539936	+	240	15903602	ABC-NBD	spr1559	-	ABC transporter ATP-binding protein - unknown substrate
1559	 38.75	0	1539872..1540720	+	282	15903603	-	spr1560	-	hypothetical protein
39.86	MEAN

4.53	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.