IslandPathversion 1.0

IslandPath Analysis: Streptococcus pneumoniae R6



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.86 STD DEV: 4.53
Streptococcus pneumoniae R6, complete genome - 1..2038615
2043 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
101	 39.72	0	108506..109303	+	265	15902145	ABC-SBP	spr0101	-	amino acid ABC transporter periplasmic amino acid-binding protein
102	 41.51	0	109269..110516	+	415	15902146	argG	spr0102	-	argininosuccinate synthase
103	 40.95	0	110545..111936	+	463	15902147	argH	spr0103	-	argininosuccinate lyase
104	 37.33	0	112225..113124	-	299	15902148	-	spr0104	-	hypothetical protein
105	 35.47	0	113542..113775	+	77	15902149	Transporter-truncation	spr0105	-	transporter, truncation
106	 33.95	-1	113839..115773	+	644	15902150	Transporter-truncation	spr0106	-	transporter, truncation
107	 29.91	-2	115766..116233	+	155	15902151	-	spr0107	-	hypothetical protein
108	 34.37	-1	116230..117582	+	450	15902152	-	spr0108	-	hypothetical protein
109	 39.63	0	117728..118108	+	126	15902153	-	spr0109	-	hypothetical protein
110	 37.69	0	118611..118931	-	106	15902154	-	spr0110	-	hypothetical protein
111	 40.86	0	119688..120059	+	123	15902155	-	spr0111	-	hypothetical protein
112	 23.47	-2	120067..120279	+	70	15902156	-	spr0112	-	hypothetical protein
113	 29.93	-2	121084..122142	+	352	15902157	-	spr0113	-	hypothetical protein
114	 28.60	-2	122441..123433	+	330	15902158	-	spr0114	-	hypothetical protein
115	 40.27	0	123810..124184	+	124	15902159	-	spr0115	-	hypothetical protein
116	 21.31	-2	124191..124373	+	60	15902160	-	spr0116	-	hypothetical protein
117	 29.90	-2	124392..125294	+	300	15902161	-	spr0117	-	hypothetical protein
118	 38.50	0	125317..125703	+	128	15902162	-	spr0118	-	hypothetical protein
119	 27.01	-2	125670..126428	+	252	15902163	-	spr0119	-	hypothetical protein
120	 30.33	-2	127503..127802	+	99	15902164	-	spr0120	-	hypothetical protein
121	 42.58	0	128356..130215	+	619	15902165	pspA	spr0121	-	surface protein pspA precursor
122	 47.96	+1	130562..131737	+	391	15902166	trmU	spr0122	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
123	 44.10	0	131851..132333	+	160	15902167	-	spr0123	-	MutT/nudix family protein
124	 46.34	+1	132343..134256	+	637	15902168	gidA	spr0124	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
125	 46.32	+1	134636..136468	-	610	15902169	-	spr0125	-	hypothetical protein
126	 43.16	0	136317..136550	-	77	15902170	-	spr0126	-	hypothetical protein
127	 35.29	-1	137368..137520	-	50	15902171	orf51	spr0127	-	hypothetical protein
128	 38.17	0	137522..137707	-	61	15902172	-	spr0128	-	hypothetical protein
129	 45.47	+1	137885..138568	+	227	15902173	-	spr0129	-	hypothetical protein
130	 45.89	+1	138565..139002	+	145	15902174	rimI	spr0130	-	ribosomal protein alanine acetyltransferase
131	 48.27	+1	138992..140002	+	336	15902175	gcp	spr0131	-	O-sialoglycoprotein endopeptidase
132	 38.24	0	140042..140428	-	128	15902176	IS1167-truncation	spr0132	-	degenerate transposase (orf2)
133	 46.56	+1	140419..140970	-	183	15902177	IS1167-truncation	spr0133	-	degenerate transposase (orf2)
134	 37.83	0	142041..142307	-	88	15902178	transposase_A	spr0134	-	degenerative transposase
135	 29.55	-2	142595..143809	+	404	15902179	epsG	spr0135	-	glycosyltransferase involved exopolysaccharide (EPS) synthesis
136	 27.36	-2	143802..144755	+	317	15902180	glycosyltransferase	spr0136	-	glycosyl transferase family protein
137	 30.30	-2	144765..146381	+	538	15902181	ABC-NP	spr0137	-	ABC transporter ATP-binding protein
138	 30.95	-1	147164..147919	+	251	15902182	-	spr0138	-	hypothetical protein
139	 29.16	-2	147932..149104	+	390	15902183	ugd	spr0139	-	UDP-glucose dehydrogenase
140	 39.35	0	149499..150362	+	287	15902184	mutR	spr0140	-	transcriptional regulator
141	 44.02	0	150653..150886	+	77	15902185	-	spr0141	-	hypothetical protein
142	 35.99	0	150908..151585	+	225	15902186	-	spr0142	-	hypothetical protein
143	 37.39	0	151597..152262	+	221	15902187	-	spr0143	-	hypothetical protein
144	 37.48	0	152331..153560	+	409	15902188	-	spr0144	-	hypothetical protein
145	 44.89	+1	153770..154366	+	198	15902189	-	spr0145	-	hypothetical protein
146	 40.79	0	154470..155300	+	276	15902190	ABC-SBP	spr0146	-	ABC transporter substrate-binding protein - amino acid transport
147	 40.47	0	155454..156308	+	284	15902191	ABC-SBP	spr0147	-	lipoprotein
148	 46.22	+1	156408..157781	+	457	15902192	dapE	spr0148	-	hypothetical protein
149	 43.69	0	157774..158835	+	353	15902193	ABC-NBD	spr0149	-	ABC transporter ATP-binding protein
150	 45.31	+1	158837..159529	+	230	15902194	ABC-MSD	spr0150	-	ABC transporter permease
151	 44.21	0	159559..160128	-	189	15902195	-	spr0151	-	hypothetical protein
152	 39.02	0	160263..160877	+	204	15902196	-	spr0152	-	hypothetical protein
153	 40.95	0	161830..162525	+	231	15902197	hk07	spr0153	-	histidine kinase
154	 40.79	0	162537..163823	+	428	15902198	rr07	spr0154	-	DNA-binding response regulator
155	 38.49	0	163827..164408	+	193	15902199	-	spr0155	-	hypothetical protein
156	 39.47	0	164354..164956	+	200	15902200	-	spr0156	-	hypothetical protein
157	 44.66	+1	165249..166511	-	420	15902201	-	spr0157	-	hypothetical protein
158	 46.19	+1	166821..167279	-	152	15902202	-	spr0158	-	hypothetical protein
159	 38.51	0	167276..167797	-	173	15902203	-	spr0159	-	hypothetical protein
160	 46.00	+1	168072..170021	+	649	15902204	mutL	spr0160	-	DNA mismatch repair protein
161	 35.68	0	170346..170813	-	155	15902205	ribE	spr0161	-	riboflavin synthase beta chain
162	 35.24	-1	170814..172019	-	401	15902206	ribA	spr0162	-	3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II
163	 33.65	-1	172039..172674	-	211	15902207	ribC	spr0163	-	riboflavin synthase subunit alpha
164	 36.33	0	172659..173759	-	366	15902208	ribD	spr0164	-	riboflavin biosynthesis protein RibD
165	 43.43	0	174163..174756	+	197	15902209	ruvA	spr0165	-	Holliday junction DNA helicase motor protein
166	 46.63	+1	174766..175329	+	187	15902210	tag	spr0166	-	DNA-3-methyladenine glycosylase I
167	 36.73	0	175326..176003	+	225	15902211	-	spr0167	-	hypothetical protein
168	 41.76	0	176158..177189	-	343	15902212	-	spr0168	-	MccC family protein
169	 42.98	0	177444..178148	-	234	15902213	-	spr0169	-	hypothetical protein
170	 42.33	0	178139..179083	-	314	15902214	corA	spr0170	-	magnesium/cobalt transporter CorA
171	 47.28	+1	179215..182046	+	943	15902215	uvrA	spr0171	-	excinuclease ABC subunit A
172	 43.50	0	182039..183100	+	353	15902216	pepP	spr0172	-	peptidase M24 family protein
173	 39.10	0	183232..183630	+	132	15902217	spxA	spr0173	-	transcriptional regulator Spx
174	 38.25	0	183696..184265	+	189	15902218	-	spr0174	-	hypothetical protein
175	 37.83	0	184352..184618	+	88	15902219	-	spr0175	-	hypothetical protein
176	 41.67	0	184622..185041	+	139	15902220	-	spr0176	-	Holliday junction resolvase-like protein
177	 38.89	0	185057..185362	+	101	15902221	-	spr0177	-	hypothetical protein
178	 43.91	0	185813..187069	+	418	15902222	folC	spr0178	-	dihydrofolate:folylpolyglutamate synthetase
179	 40.08	0	187066..187584	+	172	15902223	-	spr0179	-	hypothetical protein
180	 38.42	0	187730..189262	+	510	15902224	cls	spr0180	-	cardiolipin synthetase
181	 37.50	0	189340..189483	+	47	15902225	orf47	spr0181	-	hypothetical protein
182	 40.01	0	189502..191058	+	518	15902226	-	spr0182	-	competence-induced protein Ccs4
183	 43.09	0	191172..193385	+	737	15902227	nrdD	spr0183	-	anaerobic ribonucleoside triphosphate reductase
184	 43.98	0	193581..194087	+	168	15902228	-	spr0184	-	hypothetical protein
185	 43.65	0	194080..194670	+	196	15902229	nrdG	spr0185	-	anaerobic ribonucleoside-triphosphate reductase activating protein
186	 44.82	+1	194667..195284	+	205	15902230	-	spr0186	-	hypothetical protein
187	 42.07	0	195551..195859	+	102	15902231	rpsJ	spr0187	-	30S ribosomal protein S10
188	 43.06	0	196076..196702	+	208	15902232	rplC	spr0188	-	50S ribosomal protein L3
189	 43.43	0	196727..197350	+	207	15902233	rplD	spr0189	-	50S ribosomal protein L4
190	 36.36	0	197350..197646	+	98	15902234	rplW	spr0190	-	50S ribosomal protein L23
191	 44.60	+1	197664..198497	+	277	15902235	rplB	spr0191	-	50S ribosomal protein L2
192	 40.07	0	198601..198882	+	93	15902236	rpsS	spr0192	-	30S ribosomal protein S19
193	 41.67	0	198743..199198	-	151	15902237	-	spr0193	-	hypothetical protein
194	 41.45	0	198894..199238	+	114	15902238	rplV	spr0194	-	50S ribosomal protein L22
195	 42.97	0	199251..199904	+	217	15902239	rpsC	spr0195	-	30S ribosomal protein S3
196	 44.44	+1	199908..200321	+	137	15902240	rplP	spr0196	-	50S ribosomal protein L16
197	 35.27	-1	200331..200537	+	68	15902241	rpmC	spr0197	-	50S ribosomal protein L29
198	 38.70	0	200562..200822	+	86	15902242	rpsQ	spr0198	-	30S ribosomal protein S17
199	 44.17	0	200848..201216	+	122	15902243	rplN	spr0199	-	50S ribosomal protein L14
200	 39.54	0	201294..201599	+	101	15902244	rplX	spr0200	-	50S ribosomal protein L24
39.86	MEAN

4.53	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.