IslandPath Analysis: Streptococcus pneumoniae R6



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 39.86   STD DEV: 4.53
Streptococcus pneumoniae R6, complete genome - 1..2038615
2043 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1248	 45.22	+1	1248451..1249182	-	243	15903292	aldB	spr1249	-	alpha-acetolactate decarboxylase
1249	 42.69	0	1249324..1250595	+	423	15903293	-	spr1250	-	hypothetical protein
1250	 39.95	0	1250615..1251430	-	271	15903294	glnH	spr1251	-	amino acid ABC transporter amino acid-binding protein
1251	 42.05	0	1251587..1252240	-	217	15903295	phoU	spr1252	-	phosphate transporter PhoU
1252	 43.21	0	1252252..1253010	-	252	15903296	pstB	spr1253	-	phosphate ABC transporter ATP-binding protein
1253	 41.79	0	1253023..1253826	-	267	15903297	pstB	spr1254	-	phosphate ABC transporter ATP-binding protein
1254	 44.86	+1	1253837..1254721	-	294	15903298	pstA	spr1255	-	phosphate ABC transporter permease
1255	 43.46	0	1254711..1255628	-	305	15903299	pstC	spr1256	-	phosphate ABC transporter permease
1256	 44.03	0	1255628..1256506	-	292	15903300	pstS	spr1257	-	phosphate ABC transporter phosphate-binding protein
1257	 44.44	+1	1257080..1257475	-	131	15903301	-	spr1258	-	hypothetical protein
1258	 46.02	+1	1257581..1258384	-	267	15903302	-	spr1259	-	hypothetical protein
1259	 43.93	0	1258385..1259233	-	282	15903303	-	spr1260	-	inositol monophosphatase family protein
1260	 41.94	0	1259148..1259426	-	92	15903304	-	spr1261	-	hypothetical protein
1261	 36.32	0	1259426..1259827	-	133	15903305	spxA	spr1262	-	transcriptional regulator Spx
1262	 40.25	0	1260037..1260687	-	216	15903306	-	spr1263	-	hypothetical protein
1263	 45.87	+1	1260644..1261417	-	257	15903307	nagD	spr1264	-	N-acetyl-glucosamine matabolism
1264	 41.46	0	1261428..1262165	-	245	15903308	-	spr1265	-	acyl-ACP thioesterase, putative
1265	 42.62	0	1262170..1263300	-	376	15903309	hemN	spr1266	-	coproporphyrinogen III oxidase
1266	 38.46	0	1263384..1263773	-	129	15903310	-	spr1267	-	hypothetical protein
1267	 40.10	0	1263789..1264172	-	127	15903311	-	spr1268	-	hypothetical protein
1268	 41.32	0	1264173..1264973	-	266	15903312	lgt	spr1269	-	prolipoprotein diacylglyceryl transferase
1269	 43.64	0	1264954..1265904	-	316	15903313	hprK	spr1270	-	HPr kinase/phosphorylase
1270	 36.82	0	1266019..1266219	-	66	15903314	rpsU	spr1271	-	30S ribosomal protein S21
1271	 41.77	0	1266335..1267057	-	240	15903315	nagB	spr1272	-	glucosamine-6-phosphate isomerase
1272	 47.36	+1	1267181..1268221	+	346	15903316	queA	spr1273	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
1273	 39.74	0	1268770..1269159	-	129	15903317	spsA-truncation	spr1274	-	choline binding protein
1274	 41.49	0	1270613..1271164	-	183	15903318	-	spr1275	-	hypothetical protein
1275	 47.27	+1	1271411..1272235	-	274	15903319	nadE	spr1276	-	NAD synthetase
1276	 46.20	+1	1272232..1273692	-	486	15903320	-	spr1277	-	nicotinate phosphoribosyltransferase
1277	 34.97	-1	1273808..1274296	-	162	15903321	-	spr1278	-	hypothetical protein
1278	 42.08	0	1274286..1274525	-	79	15903322	-	spr1279	-	transcriptional repressor, putative
1279	 29.08	-2	1274880..1275608	-	242	15903323	-	spr1280	-	hypothetical protein
1280	 28.77	-2	1275624..1276346	-	240	15903324	ABC-NBD	spr1281	-	ABC transporter ATP-binding protein
1281	 42.42	0	1276851..1277576	-	241	15903325	-	spr1282	-	hypothetical protein
1282	 31.55	-1	1277743..1277910	+	55	15903326	-	spr1283	-	hypothetical protein
1283	 43.98	0	1278165..1279469	-	434	15903327	-	spr1284	-	protease
1284	 27.87	-2	1280075..1280257	+	60	15903328	spnIR-truncation	spr1285	-	Type II restriction endonuclease, uncharacterized, truncation
1285	 31.25	-1	1280441..1280632	+	63	15903329	spnIR-truncation	spr1286	-	Type II restriction endonuclease, uncharacterized, truncation
1286	 27.40	-2	1280629..1281807	+	392	15903330	spnIM	spr1287	-	type II DNA modification (methyltransferase
1287	 29.10	-2	1282334..1283326	-	330	15903331	-	spr1288	-	hypothetical protein
1288	 31.91	-1	1283480..1285240	+	586	15903332	ABC-N/P	spr1289	-	ABC transporter permease/ATP-binding protein
1289	 31.73	-1	1285200..1286945	+	581	15903333	ABC-N/P	spr1290	-	ABC transporter ATP-binding protein
1290	 32.31	-1	1286956..1287540	+	194	15903334	-	spr1291	-	hypothetical protein
1291	 33.19	-1	1287540..1288235	+	231	15903335	-	spr1292	-	hypothetical protein
1292	 29.60	-2	1288223..1289587	+	454	15903336	ABC-NBD	spr1293	-	ABC transporter ATP-binding protein
1293	 41.99	0	1290375..1290836	-	153	15903337	-	spr1294	-	hypothetical protein
1294	 45.54	+1	1290909..1291121	-	70	15903338	transposase_G	spr1295	-	hypothetical protein
1295	 38.75	0	1291130..1291498	-	122	15903339	-	spr1296	-	hypothetical protein
1296	 39.49	0	1291422..1291616	-	64	15903340	-	spr1297	-	hypothetical protein
1297	 41.60	0	1291786..1292136	-	116	15903341	transposase_E	spr1298	-	degenerate transposase
1298	 33.75	-1	1292117..1292356	-	79	15903342	IS1381-truncation	spr1299	-	degenerate transposase (orf1)
1299	 42.16	0	1292606..1294168	-	520	15903343	guaA	spr1300	-	bifunctional GMP synthase/glutamine amidotransferase protein
1300	 41.53	0	1294301..1295008	+	235	15903344	-	spr1301	-	hypothetical protein
1301	 42.63	0	1295051..1296007	-	318	15903345	-	spr1302	-	hypothetical protein
1302	 40.68	0	1295956..1296894	-	312	15903346	-	spr1303	-	hypothetical protein
1303	 35.63	0	1296891..1297631	-	246	15903347	cppA	spr1304	-	C3-degrading proteinase
1304	 39.31	0	1297700..1298335	-	211	15903348	-	spr1305	-	hypothetical protein
1305	 43.96	0	1298337..1299164	-	275	15903349	-	spr1306	-	Cof family protein
1306	 39.88	0	1299186..1299521	-	111	15903350	-	spr1307	-	hypothetical protein
1307	 39.18	0	1299522..1300034	-	170	15903351	-	spr1308	-	hypothetical protein
1308	 43.98	0	1300224..1300439	+	71	15903352	-	spr1309	-	hypothetical protein
1309	 42.97	0	1300763..1301374	+	203	15903353	def	spr1310	-	peptide deformylase
1310	 42.91	0	1301386..1302147	+	253	15903354	trmH	spr1311	-	tRNA (guanosine-2'-O-)-methyltransferase
1311	 42.43	0	1302186..1303097	-	303	15903355	trxB	spr1312	-	thioredoxin reductase
1312	 38.82	0	1303163..1303399	-	78	15903356	-	spr1313	-	hypothetical protein
1313	 42.07	0	1303465..1304208	-	247	15903357	ABC-NDB	spr1314	-	amino acid ABC transporter ATP-binding protein
1314	 44.32	0	1304208..1305008	-	266	15903358	ABC-MSP	spr1315	-	amino acid ABC transporter permease
1315	 36.69	0	1305166..1305522	-	118	15903359	-	spr1316	-	hypothetical protein
1316	 42.56	0	1305516..1306046	-	176	15903360	ogt	spr1317	-	methylated-DNA--protein-cysteine S-methyltransferase
1317	 42.63	0	1306046..1306540	-	164	15903361	-	spr1318	-	hypothetical protein
1318	 40.40	0	1306669..1307121	+	150	15903362	-	spr1319	-	hypothetical protein
1319	 41.36	0	1307118..1307765	+	215	15903363	-	spr1320	-	hemolysin
1320	 42.27	0	1307786..1308367	-	193	15903364	-	spr1321	-	glutamine amidotransferase subunit PdxT
1321	 44.07	0	1308368..1309261	-	297	15903365	pdx1	spr1322	-	pyridoxine biosynthesis protein
1322	 40.87	0	1309395..1310774	-	459	15903366	nox	spr1323	-	NADH oxidase
1323	 43.94	0	1311068..1311991	+	307	15903367	apbE	spr1324	-	thiamine biosynthesis protein ApbE, putative
1324	 39.60	0	1312051..1312656	+	201	15903368	-	spr1325	-	hypothetical protein
1325	 43.13	0	1312674..1313918	+	414	15903369	-	spr1326	-	oxidoreductase, putative
1326	 40.31	0	1314035..1314292	-	85	15903370	-	spr1327	-	hypothetical protein
1327	 41.92	0	1314334..1316370	-	678	15903371	glyS	spr1328	-	glycyl-tRNA synthetase subunit beta
1328	 43.68	0	1316630..1317547	-	305	15903372	glyQ	spr1329	-	glycyl-tRNA synthetase subunit alpha
1329	 32.56	-1	1317741..1318130	-	129	15903373	-	spr1330	-	hypothetical protein
1330	 36.03	0	1318112..1318519	-	135	15903374	-	spr1331	-	hypothetical protein
1331	 42.59	0	1318774..1319616	-	280	15903375	-	spr1332	-	hypothetical protein
1332	 39.01	0	1319730..1321121	-	463	15903376	pgdA	spr1333	-	peptidoglycan GlcNAc deacetylase
1333	 37.40	0	1321356..1321601	-	81	15903377	-	spr1334	-	hypothetical protein
1334	 41.15	0	1321864..1322925	+	353	15903378	mocA	spr1335	-	oxidoreductase
1335	 40.90	0	1322922..1324004	+	360	15903379	DEAD/H	spr1336	-	DEAD RNA helicase
1336	 38.27	0	1324068..1324229	-	53	15903380	transposase_D	spr1337	-	degenerate transposase
1337	 38.61	0	1324163..1324579	-	138	15903381	transposase_D	spr1338	-	degenerate transposase
1338	 36.20	0	1324655..1325143	-	162	15903382	IS861-truncation	spr1339	-	degenerate transposase (orf2)
1339	 36.31	0	1325119..1325487	-	122	15903383	IS861-truncation	spr1340	-	degenerate transposase (orf2)
1340	 28.89	-2	1325713..1325982	-	89	15903384	IS861-truncation	spr1341	-	degenerate transposase (orf1)
1341	 43.07	0	1325979..1326317	-	112	15903385	transposase_C	spr1342	-	degenerate transposase
1342	 44.28	0	1326964..1328160	-	398	15903386	tuf	spr1343	-	elongation factor Tu
1343	 44.25	0	1329082..1329951	-	289	15903387	glpF	spr1344	-	glycerol uptake facilitator protein, putative
1344	 41.05	0	1330175..1330783	-	202	15903388	-	spr1345	-	cell wall surface anchor family protein
1345	 37.74	0	1330741..1331853	-	370	15903389	-	spr1346	-	hypothetical protein
1346	 36.08	0	1331958..1332212	-	84	15903390	-	spr1347	-	hypothetical protein
1347	 30.45	-2	1332206..1332448	-	80	15903391	-	spr1348	-	hypothetical protein
39.86	MEAN

4.53	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.