IslandPath Analysis: Streptococcus pneumoniae R6



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 39.86   STD DEV: 4.53
Streptococcus pneumoniae R6, complete genome - 1..2038615
2043 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
57	 42.14	0	60528..64466	-	1312	15902101	strH	spr0057	-	beta-N-acetylhexosaminidase
58	 37.15	0	64781..65539	-	252	15902102	-	spr0058	-	hypothetical protein
59	 41.95	0	65845..67632	+	595	15902103	bgaC	spr0059	-	Beta-galactosidase 3
60	 41.09	0	67629..68105	+	158	15902104	PTS-EIIB	spr0060	-	PTS system, IIB component
61	 44.37	0	68133..69038	+	301	15902105	PTS-EIIC	spr0061	-	PTS system, IIC component
62	 40.43	0	69010..69840	+	276	15902106	PTS-EIID	spr0062	-	PTS system, IID component
63	 43.95	0	69847..70251	+	134	15902107	PTS-EII	spr0063	-	PTS system, IIA component
64	 42.25	0	70549..71715	+	388	15902108	agaS	spr0064	-	sugar isomerase domain protein AgaS
65	 45.47	+1	71831..72868	+	345	15902109	galM	spr0065	-	aldose 1-epimerase
66	 44.33	0	73075..73929	+	284	15902110	-	spr0066	-	hypothetical protein
67	 39.53	0	74079..74336	+	85	15902111	-	spr0067	-	hypothetical protein
68	 48.63	+1	75311..76075	+	254	15902112	-	spr0068	-	hypothetical protein
69	 32.08	-1	76547..76705	+	52	15902113	-	spr0069	-	hypothetical protein
70	 41.45	0	76686..78065	+	459	15902114	trkH	spr0070	-	Trk transporter membrane-spanning protein - K+ transport
71	 43.52	0	78058..78744	+	228	15902115	trkA	spr0071	-	Trk transporter NAD+ binding protein - K+ transport
72	 44.63	+1	79054..79593	+	179	15902116	-	spr0072	-	hypothetical protein
73	 44.74	+1	79471..80040	-	189	15902117	-	spr0073	-	hypothetical protein
74	 42.34	0	79660..80070	+	136	15902118	-	spr0074	-	hypothetical protein
75	 42.94	0	80186..83671	+	1161	15902119	-	spr0075	-	cell wall surface anchor family protein
76	 41.77	0	83838..84536	+	232	15902120	rr08	spr0076	-	DNA-binding response regulator
77	 43.97	0	84533..85585	+	350	15902121	hk08	spr0077	-	sensor histidine kinase
78	 43.63	0	85780..86391	+	203	15902122	rpsD	spr0078	-	30S ribosomal protein S4
79	 35.03	-1	86559..86735	+	58	15902123	transposase_A	spr0079	-	degenerative transposase
80	 42.22	0	87044..87313	+	89	15902124	-	spr0080	-	hypothetical protein
81	 40.83	0	87777..88736	+	319	15902125	ABC-MSP	spr0081	-	ABC transporter permease
82	 42.21	0	88750..89673	+	307	15902126	ABC-MSP	spr0082	-	ABC transporter permease
83	 37.61	0	89862..91406	+	514	15902127	ABC-SBP	spr0083	-	ABC transporter substrate-binding protein
84	 44.48	+1	91678..92664	+	328	15902128	-	spr0084	-	hypothetical protein
85	 40.34	0	92633..93646	+	337	15902129	-	spr0085	-	hypothetical protein
86	 40.00	0	93718..94782	-	354	15902130	-	spr0086	-	hypothetical protein
87	 40.60	0	94845..95807	-	320	15902131	-	spr0087	-	hypothetical protein
88	 43.94	0	95749..96342	-	197	15902132	-	spr0088	-	hypothetical protein
89	 42.20	0	96329..96655	-	108	15902133	-	spr0089	-	hypothetical protein
90	 44.82	+1	96794..97960	-	388	15902134	-	spr0090	-	transporter, putative
91	 33.33	-1	98018..99175	+	385	15902135	-	spr0091	-	hypothetical protein
92	 42.19	0	99217..101067	+	616	15902136	capD	spr0092	-	CapD protein, required for the biosynthesis of type 1 capsular polysaccharide
93	 43.13	0	101463..102095	-	210	15902137	gph	spr0093	-	phosphoglycolate phosphatase
94	 48.00	+1	102117..102989	-	290	15902138	sdaA	spr0094	-	L-serine dehydratase, iron-sulfur-dependent, alpha subunit
95	 41.67	0	102998..103669	-	223	15902139	sdaB	spr0095	-	L-serine dehydratase, iron-sulfur-dependent, beta subunit
96	 40.87	0	103911..104414	+	167	15902140	-	spr0096	-	LysM domain protein
97	 38.55	0	104537..104785	-	82	15902141	-	spr0097	-	hypothetical protein
98	 39.36	0	105242..105490	+	82	15902142	-	spr0098	-	bacteriocin, putative
99	 37.89	0	105545..107653	+	702	15902143	ABC-MSP	spr0099	-	ABC transporter membrane-spanning permease - amino acid transport
100	 40.81	0	107650..108291	+	213	15902144	ABC-NBD	spr0100	-	amino acid ABC transporter ATP-binding protein
101	 39.72	0	108506..109303	+	265	15902145	ABC-SBP	spr0101	-	amino acid ABC transporter periplasmic amino acid-binding protein
102	 41.51	0	109269..110516	+	415	15902146	argG	spr0102	-	argininosuccinate synthase
103	 40.95	0	110545..111936	+	463	15902147	argH	spr0103	-	argininosuccinate lyase
104	 37.33	0	112225..113124	-	299	15902148	-	spr0104	-	hypothetical protein
105	 35.47	0	113542..113775	+	77	15902149	Transporter-truncation	spr0105	-	transporter, truncation
106	 33.95	-1	113839..115773	+	644	15902150	Transporter-truncation	spr0106	-	transporter, truncation
107	 29.91	-2	115766..116233	+	155	15902151	-	spr0107	-	hypothetical protein
108	 34.37	-1	116230..117582	+	450	15902152	-	spr0108	-	hypothetical protein
109	 39.63	0	117728..118108	+	126	15902153	-	spr0109	-	hypothetical protein
110	 37.69	0	118611..118931	-	106	15902154	-	spr0110	-	hypothetical protein
111	 40.86	0	119688..120059	+	123	15902155	-	spr0111	-	hypothetical protein
112	 23.47	-2	120067..120279	+	70	15902156	-	spr0112	-	hypothetical protein
113	 29.93	-2	121084..122142	+	352	15902157	-	spr0113	-	hypothetical protein
114	 28.60	-2	122441..123433	+	330	15902158	-	spr0114	-	hypothetical protein
115	 40.27	0	123810..124184	+	124	15902159	-	spr0115	-	hypothetical protein
116	 21.31	-2	124191..124373	+	60	15902160	-	spr0116	-	hypothetical protein
117	 29.90	-2	124392..125294	+	300	15902161	-	spr0117	-	hypothetical protein
118	 38.50	0	125317..125703	+	128	15902162	-	spr0118	-	hypothetical protein
119	 27.01	-2	125670..126428	+	252	15902163	-	spr0119	-	hypothetical protein
120	 30.33	-2	127503..127802	+	99	15902164	-	spr0120	-	hypothetical protein
121	 42.58	0	128356..130215	+	619	15902165	pspA	spr0121	-	surface protein pspA precursor
122	 47.96	+1	130562..131737	+	391	15902166	trmU	spr0122	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
123	 44.10	0	131851..132333	+	160	15902167	-	spr0123	-	MutT/nudix family protein
124	 46.34	+1	132343..134256	+	637	15902168	gidA	spr0124	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
125	 46.32	+1	134636..136468	-	610	15902169	-	spr0125	-	hypothetical protein
126	 43.16	0	136317..136550	-	77	15902170	-	spr0126	-	hypothetical protein
127	 35.29	-1	137368..137520	-	50	15902171	orf51	spr0127	-	hypothetical protein
128	 38.17	0	137522..137707	-	61	15902172	-	spr0128	-	hypothetical protein
129	 45.47	+1	137885..138568	+	227	15902173	-	spr0129	-	hypothetical protein
130	 45.89	+1	138565..139002	+	145	15902174	rimI	spr0130	-	ribosomal protein alanine acetyltransferase
131	 48.27	+1	138992..140002	+	336	15902175	gcp	spr0131	-	O-sialoglycoprotein endopeptidase
132	 38.24	0	140042..140428	-	128	15902176	IS1167-truncation	spr0132	-	degenerate transposase (orf2)
133	 46.56	+1	140419..140970	-	183	15902177	IS1167-truncation	spr0133	-	degenerate transposase (orf2)
134	 37.83	0	142041..142307	-	88	15902178	transposase_A	spr0134	-	degenerative transposase
135	 29.55	-2	142595..143809	+	404	15902179	epsG	spr0135	-	glycosyltransferase involved exopolysaccharide (EPS) synthesis
136	 27.36	-2	143802..144755	+	317	15902180	glycosyltransferase	spr0136	-	glycosyl transferase family protein
137	 30.30	-2	144765..146381	+	538	15902181	ABC-NP	spr0137	-	ABC transporter ATP-binding protein
138	 30.95	-1	147164..147919	+	251	15902182	-	spr0138	-	hypothetical protein
139	 29.16	-2	147932..149104	+	390	15902183	ugd	spr0139	-	UDP-glucose dehydrogenase
140	 39.35	0	149499..150362	+	287	15902184	mutR	spr0140	-	transcriptional regulator
141	 44.02	0	150653..150886	+	77	15902185	-	spr0141	-	hypothetical protein
142	 35.99	0	150908..151585	+	225	15902186	-	spr0142	-	hypothetical protein
143	 37.39	0	151597..152262	+	221	15902187	-	spr0143	-	hypothetical protein
144	 37.48	0	152331..153560	+	409	15902188	-	spr0144	-	hypothetical protein
145	 44.89	+1	153770..154366	+	198	15902189	-	spr0145	-	hypothetical protein
146	 40.79	0	154470..155300	+	276	15902190	ABC-SBP	spr0146	-	ABC transporter substrate-binding protein - amino acid transport
147	 40.47	0	155454..156308	+	284	15902191	ABC-SBP	spr0147	-	lipoprotein
148	 46.22	+1	156408..157781	+	457	15902192	dapE	spr0148	-	hypothetical protein
149	 43.69	0	157774..158835	+	353	15902193	ABC-NBD	spr0149	-	ABC transporter ATP-binding protein
150	 45.31	+1	158837..159529	+	230	15902194	ABC-MSD	spr0150	-	ABC transporter permease
151	 44.21	0	159559..160128	-	189	15902195	-	spr0151	-	hypothetical protein
152	 39.02	0	160263..160877	+	204	15902196	-	spr0152	-	hypothetical protein
153	 40.95	0	161830..162525	+	231	15902197	hk07	spr0153	-	histidine kinase
154	 40.79	0	162537..163823	+	428	15902198	rr07	spr0154	-	DNA-binding response regulator
155	 38.49	0	163827..164408	+	193	15902199	-	spr0155	-	hypothetical protein
156	 39.47	0	164354..164956	+	200	15902200	-	spr0156	-	hypothetical protein
39.86	MEAN

4.53	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.