IslandPath Analysis: Staphylothermus marinus F1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.91   STD DEV: 3.41
Staphylothermus marinus F1, complete genome - 1..1570485
1570 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
740	 32.97	0	754176..754454	-	92	126465653	-	Smar_0753	-	hypothetical protein
741	 42.63	+1	754496..755065	-	189	126465654	-	Smar_0754	-	hypothetical protein
742	 41.21	+1	755226..755555	+	109	126465655	-	Smar_0755	-	hypothetical protein
743	 32.58	0	755579..756244	+	221	126465656	-	Smar_0756	-	hypothetical protein
744	 36.87	0	756237..756689	+	150	126465657	-	Smar_0757	-	hypothetical protein
745	 32.32	-1	756710..757102	+	130	126465658	-	Smar_0758	-	PadR family transcriptional regulator
746	 34.87	0	757107..757628	+	173	126465659	-	Smar_0759	-	hypothetical protein
747	 35.42	0	757817..758248	+	143	126465660	-	Smar_0760	-	DNA polymerase beta subunit
748	 39.97	+1	759298..761016	+	572	126465661	-	Smar_0761	-	N-6 DNA methylase
749	 34.77	0	761024..762415	+	463	126465662	-	Smar_0762	-	restriction modification system DNA specificity subunit
750	 41.30	+1	762399..765461	+	1020	126465663	-	Smar_0763	-	HsdR family type I site-specific deoxyribonuclease
751	 34.77	0	765445..766002	+	185	126465664	-	Smar_0764	-	hypothetical protein
752	 37.35	0	766150..766398	+	82	126465665	-	Smar_0765	-	hypothetical protein
753	 39.76	+1	766738..767157	+	139	126465666	-	Smar_0766	-	Ferritin, Dps family protein
754	 37.00	0	767892..769118	+	408	126465667	-	Smar_0767	-	IS605 family transposase OrfB
755	 40.63	+1	769389..769799	+	136	126465668	-	Smar_0768	-	HEPN domain-containing protein
756	 34.57	0	769783..770187	+	134	126465669	-	Smar_0769	-	DNA polymerase beta subunit
757	 36.87	0	770330..771205	-	291	126465670	-	Smar_0770	-	hypothetical protein
758	 31.86	-1	772067..772405	+	112	126465671	-	Smar_0771	-	hypothetical protein
759	 41.40	+1	772516..773841	+	441	126465672	-	Smar_0772	-	signal recognition particle subunit FFH/SRP54 (srp54)
760	 31.77	-1	773838..774413	+	191	126465673	-	Smar_0773	-	hypothetical protein
761	 35.76	0	774415..775692	+	425	126465674	-	Smar_0774	-	hypothetical protein
762	 36.00	0	775816..776115	+	99	126465675	-	Smar_0775	-	50S ribosomal protein L21e
763	 34.71	0	776165..776527	+	120	126465676	-	Smar_0776	-	DNA-directed RNA polymerase, subunit F
764	 37.85	0	776652..777293	+	213	126465677	-	Smar_0777	-	hypothetical protein
765	 34.57	0	777327..778133	+	268	126465678	-	Smar_0778	-	dimethyladenosine transferase
766	 32.62	0	778181..778741	+	186	126465679	-	Smar_0779	-	methyltransferase small
767	 37.93	0	778726..779421	+	231	126465680	-	Smar_0780	-	RNA methyltransferase
768	 33.19	0	779427..780101	-	224	126465681	-	Smar_0781	-	uridylate kinase, putative
769	 36.70	0	780219..782057	+	612	126465682	-	Smar_0782	-	D-fructose-6-phosphate amidotransferase
770	 32.84	0	782123..783340	+	405	126465683	-	Smar_0783	-	nucleotidyl transferase
771	 35.22	0	784165..785013	-	282	126465684	-	Smar_0784	-	MscS mechanosensitive ion channel
772	 39.72	+1	785014..785154	-	46	126465685	-	Smar_0785	-	hypothetical protein
773	 36.08	0	785264..785737	-	157	126465686	-	Smar_0786	-	hypothetical protein
774	 33.80	0	785859..786074	+	71	126465687	-	Smar_0787	-	thiamineS protein
775	 34.81	0	786094..786363	+	89	126465688	-	Smar_0788	-	thiamineS protein
776	 35.49	0	786370..787110	-	246	126465689	-	Smar_0789	-	UBA/THIF-type NAD/FAD binding protein
777	 38.08	0	787168..787968	-	266	126465690	-	Smar_0790	-	GTP-binding protein YlqF
778	 34.36	0	787971..788555	-	194	126465691	-	Smar_0791	-	hypothetical protein
779	 36.75	0	788616..789638	+	340	126465692	-	Smar_0792	-	hypothetical protein
780	 33.25	0	789655..790911	-	418	126465693	-	Smar_0793	-	phosphoadenosine phosphosulfate reductase
781	 30.82	-1	791076..791393	+	105	126465694	-	Smar_0794	-	hypothetical protein
782	 36.52	0	791515..793209	+	564	126465695	-	Smar_0795	-	radical SAM domain-containing protein
783	 33.16	0	793605..794180	-	191	126465696	-	Smar_0796	-	hypothetical protein
784	 37.99	0	794177..795358	-	393	126465697	-	Smar_0797	-	ORC complex protein Cdc6/Orc1
785	 30.34	-1	795497..796165	+	222	126465698	-	Smar_0798	-	HAD family hydrolase
786	 35.81	0	796181..797107	+	308	126465699	-	Smar_0799	-	hypothetical protein
787	 35.93	0	797095..798210	+	371	126465700	-	Smar_0800	-	O-succinylbenzoate synthase
788	 39.13	0	798567..798842	+	91	126465701	rpoH	Smar_0801	-	DNA-directed RNA polymerase subunit H
789	 39.35	+1	798850..802320	+	1156	126465702	-	Smar_0802	-	DNA-directed RNA polymerase subunit beta
790	 39.87	+1	802334..804994	+	886	126465703	-	Smar_0803	-	DNA-directed RNA polymerase subunit alpha
791	 36.65	0	804991..806256	+	421	126465704	-	Smar_0804	-	DNA-directed RNA polymerase, subunit A"
792	 37.04	0	806264..806587	+	107	126465705	-	Smar_0805	-	50S ribosomal protein L30E
793	 37.09	0	806584..807036	+	150	126465706	-	Smar_0806	-	NusA family protein
794	 39.41	+1	807116..807559	+	147	126465707	rps12P	Smar_0807	-	30S ribosomal protein S12P
795	 32.76	0	807596..808120	-	174	126465708	-	Smar_0808	-	hypothetical protein
796	 37.21	0	808288..808881	+	197	126465709	-	Smar_0809	-	30S ribosomal protein S7P
797	 42.29	+1	809084..810400	+	438	126465710	-	Smar_0810	-	elongation factor 1-alpha
798	 36.54	0	810508..810819	+	103	126465711	-	Smar_0811	-	SSU ribosomal protein S10P
799	 37.28	0	811335..811790	+	151	126465712	rps13p	Smar_0812	-	30S ribosomal protein S13P
800	 38.86	0	811804..812310	+	168	126465713	rps4p	Smar_0813	-	30S ribosomal protein S4
801	 47.01	+2	812340..812741	+	133	126465714	rps11p	Smar_0814	-	30S ribosomal protein S11P
802	 34.28	0	812772..813614	+	280	126465715	-	Smar_0815	-	DNA-directed RNA polymerase, subunit D
803	 39.67	+1	813611..813973	+	120	126465716	-	Smar_0816	-	50S ribosomal protein L18AE
804	 38.19	0	813979..814431	+	150	126465717	-	Smar_0817	-	50S ribosomal protein L13P
805	 42.51	+1	814428..814841	+	137	126465718	rps9p	Smar_0818	-	30S ribosomal protein S9P
806	 34.83	0	814863..815063	+	66	126465719	-	Smar_0819	-	DNA-directed RNA polymerase subunit N
807	 37.86	0	815086..815748	+	220	126465720	rps2P	Smar_0820	-	30S ribosomal protein S2
808	 39.89	+1	815757..816626	+	289	126465721	-	Smar_0821	-	hypothetical protein
809	 34.93	0	816716..817840	+	374	126465722	-	Smar_0822	-	isopentenyl pyrophosphate isomerase
810	 32.95	0	817843..818361	+	172	126465723	-	Smar_0823	-	hypothetical protein
811	 35.27	0	818381..820081	+	566	126465724	-	Smar_0824	-	glutamyl-tRNA synthetase
812	 41.09	+1	820158..820544	+	128	126465725	rpl7ae	Smar_0825	-	50S ribosomal protein L7Ae
813	 37.78	0	820690..820959	-	89	126465726	rps28e	Smar_0826	-	30S ribosomal protein S28e
814	 35.98	0	821146..821334	+	62	126465727	-	Smar_0827	-	50S ribosomal protein L24E
815	 37.09	0	821356..821781	+	141	126465728	-	Smar_0828	-	nucleoside diphosphate kinase
816	 37.89	0	821792..823612	-	606	126465729	-	Smar_0829	-	translation initiation factor IF-2
817	 36.71	0	823915..824565	+	216	126465730	-	Smar_0830	-	30S ribosomal protein S6e
818	 41.87	+1	824649..825902	+	417	126465731	-	Smar_0831	-	translation initiation factor IF-2 subunit gamma
819	 33.09	0	825922..826332	+	136	126465732	-	Smar_0832	-	SSU processome protein Utp24
820	 36.38	0	826446..827003	+	185	126465733	-	Smar_0833	-	DNA-directed RNA polymerase subunit E'
821	 39.61	+1	827009..827215	+	68	126465734	-	Smar_0834	-	DNA-directed RNA polymerase, subunit E''
822	 32.71	0	827225..827707	+	160	126465735	-	Smar_0835	-	hypothetical protein
823	 36.41	0	827754..828110	+	118	126465736	-	Smar_0836	-	SSU ribosomal protein S24E
824	 38.79	0	828116..828280	+	54	126465737	-	Smar_0837	-	ribosomal protein S27a
825	 38.94	0	828374..829390	+	338	126465738	-	Smar_0838	-	metalloendopeptidase glycoprotease family
826	 32.75	0	829375..830055	+	226	126465739	-	Smar_0839	-	Mn2+-dependent serine/threonine protein kinase
827	 33.16	0	830048..830629	+	193	126465740	-	Smar_0840	-	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase
828	 39.14	0	830697..831161	+	154	126465741	rps15p	Smar_0841	-	30S ribosomal protein S15P
829	 30.34	-1	831238..832407	+	389	126465742	-	Smar_0842	-	hypothetical protein
830	 29.59	-1	832385..832651	+	88	126465743	-	Smar_0843	-	hypothetical protein
831	 34.74	0	832711..833349	+	212	126465744	-	Smar_0844	-	30S ribosomal protein S3Ae
832	 33.54	0	833556..834044	+	162	126465745	-	Smar_0845	-	THUMP domain-containing protein
833	 41.67	+1	834041..834208	+	55	126465746	-	Smar_0846	-	hypothetical protein
834	 42.81	+2	834223..835488	+	421	126465747	-	Smar_0847	-	IS605 family transposase OrfB
835	 36.22	0	836037..837317	+	426	126465748	-	Smar_0849	-	nucleotidyl transferase
836	 36.24	0	837363..837740	+	125	126465749	-	Smar_0850	-	hypothetical protein
837	 38.37	0	837709..838938	-	409	126465750	-	Smar_0851	-	translation-associated GTPase
838	 40.72	+1	839081..839743	+	220	126465751	-	Smar_0852	-	50S ribosomal protein L15e
839	 33.33	0	839749..840192	+	147	126465752	-	Smar_0853	-	hypothetical protein
35.91	MEAN

3.41	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.