IslandPathversion 1.0

IslandPath Analysis: Staphylothermus marinus F1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.91 STD DEV: 3.41
Staphylothermus marinus F1, complete genome - 1..1570485
1570 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
308	 32.57	0	324445..325488	+	347	126465221	-	Smar_0309	-	hypothetical protein
309	 29.89	-1	325506..326696	+	396	126465222	-	Smar_0310	-	CRISPR-associated RAMP Csm5 family protein
310	 34.50	0	326714..329536	+	940	126465223	-	Smar_0311	-	CRISPR-associated Csm1 family protein
311	 35.11	0	329761..330042	+	93	126465224	-	Smar_0312	-	hypothetical protein
312	 35.72	0	331337..332299	-	320	126465225	-	Smar_0313	-	hypothetical protein
313	 39.86	+1	333712..334737	+	341	126465226	-	Smar_0314	-	CRISPR-associated Cas1 family protein
314	 39.12	0	334746..335678	+	310	126465227	-	Smar_0315	-	CRISPR-associated RAMP Csa1 family protein
315	 38.20	0	335685..335951	+	88	126465228	-	Smar_0316	-	CRISPR-associated Cas2 family protein
316	 33.69	0	335938..336501	+	187	126465229	-	Smar_0317	-	CRISPR-associated exonuclease Cas4 family protein
317	 33.78	0	337613..338503	-	296	126465230	-	Smar_0318	-	hypothetical protein
318	 37.24	0	338532..339197	-	221	126465231	-	Smar_0319	-	CRISPR-associated Csa3 family protein
319	 36.22	0	339367..339747	+	126	126465232	-	Smar_0320	-	CRISPR-associated RAMP Csa5 family protein
320	 36.85	0	339747..340742	+	331	126465233	-	Smar_0321	-	CRISPR-associated autoregulator Csa2 family protein
321	 33.45	0	340763..341641	+	292	126465234	-	Smar_0322	-	CRISPR-associated Cas5a family protein
322	 35.17	0	341629..342882	+	417	126465235	-	Smar_0323	-	hypothetical protein
323	 35.52	0	342909..344642	+	577	126465236	-	Smar_0324	-	CRISPR-associated helicase Cas3 family protein protein
324	 33.57	0	344649..345509	+	286	126465237	-	Smar_0325	-	CRISPR-associated helicase Cas3 family protein protein
325	 40.08	+1	346095..346346	+	83	126465238	-	Smar_0326	-	AbrB family transcriptional regulator
326	 34.29	0	346791..347000	+	69	126465239	-	Smar_0328	-	hypothetical protein
327	 36.00	0	347514..348413	-	299	126465240	-	Smar_0329	-	hypothetical protein
328	 35.64	0	348508..349635	-	375	126465241	-	Smar_0330	-	hypothetical protein
329	 39.41	+1	349874..350581	-	235	126465242	-	Smar_0331	-	deoxyribose-phosphate aldolase
330	 39.25	0	351338..352621	-	427	126465243	-	Smar_0332	-	phosphoglycerate mutase
331	 37.16	0	352986..354239	+	417	126465244	-	Smar_0333	-	aspartate-ammonia ligase
332	 37.35	0	354248..354994	-	248	126465245	-	Smar_0334	-	metallophosphoesterase
333	 39.27	0	355195..356289	+	364	126465246	-	Smar_0335	-	sodium/sulphate symporter
334	 37.84	0	356286..356507	-	73	126465247	-	Smar_0336	-	CopG/DNA-binding domain-containing protein
335	 38.99	0	356565..357713	-	382	126465248	sat	Smar_0337	-	sulfate adenylyltransferase
336	 33.33	0	357737..357967	-	76	126465249	-	Smar_0338	-	hypothetical protein
337	 39.01	0	358195..358740	+	181	126465250	-	Smar_0339	-	adenylylsulfate kinase
338	 38.56	0	358865..360223	+	452	126465251	-	Smar_0340	-	type I phosphodiesterase/nucleotide pyrophosphatase
339	 39.60	+1	360248..362017	+	589	126465252	-	Smar_0341	-	pyruvate carboxylase subunit B
340	 37.65	0	362020..362991	-	323	126465253	-	Smar_0342	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
341	 39.41	+1	362994..364013	-	339	126465254	-	Smar_0343	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
342	 40.10	+1	364010..365176	-	388	126465255	-	Smar_0344	-	binding-protein-dependent transport systems inner membrane component
343	 38.04	0	365194..366192	-	332	126465256	-	Smar_0345	-	binding-protein-dependent transport systems inner membrane component
344	 39.74	+1	366284..368530	-	748	126465257	-	Smar_0346	-	extracellular solute-binding protein
345	 30.37	-1	368628..369167	+	179	126465258	-	Smar_0347	-	hypothetical protein
346	 38.40	0	369388..370986	-	532	126465259	-	Smar_0348	-	hypothetical protein
347	 33.82	0	371275..372099	-	274	126465260	-	Smar_0349	-	radical SAM domain-containing protein
348	 37.12	0	372104..373369	-	421	126465261	-	Smar_0350	-	hypothetical protein
349	 33.03	0	373512..374813	-	433	126465262	-	Smar_0351	-	regulatory protein, ArsR
350	 38.62	0	374956..375201	-	81	126465263	-	Smar_0352	-	ferredoxin
351	 37.40	0	375393..375884	+	163	126465264	-	Smar_0353	-	hypothetical protein
352	 41.30	+1	375943..376959	-	338	126465265	-	Smar_0354	-	cysteine synthase
353	 38.39	0	377361..378131	+	256	126465266	-	Smar_0355	-	molybdopterin dehydrogenase, FAD-binding
354	 41.44	+1	378137..378679	+	180	126465267	-	Smar_0356	-	2Fe-2S iron-sulfur cluster binding domain-containing protein
355	 41.20	+1	378687..381101	+	804	126465268	-	Smar_0357	-	aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding
356	 32.33	-1	381189..381986	-	265	126465269	-	Smar_0358	-	hypothetical protein
357	 35.42	0	382025..382312	-	95	126465270	-	Smar_0359	-	hypothetical protein
358	 31.24	-1	382291..383484	-	397	126465271	-	Smar_0360	-	hypothetical protein
359	 30.54	-1	383497..384033	-	178	126465272	-	Smar_0361	-	hypothetical protein
360	 35.00	0	384177..385259	+	360	126465273	-	Smar_0362	-	hypothetical protein
361	 36.71	0	385263..386033	-	256	126465274	-	Smar_0363	-	ABC transporter related
362	 33.24	0	386116..387156	+	346	126465275	-	Smar_0364	-	periplasmic solute binding protein
363	 33.68	0	387153..388019	+	288	126465276	-	Smar_0365	-	ABC-3 protein
364	 35.52	0	388016..388426	+	136	126465277	-	Smar_0366	-	CopG family transcriptional regulator
365	 37.77	0	388429..389307	+	292	126465278	-	Smar_0367	-	methyltransferase-like protein
366	 35.92	0	389304..389651	-	115	126465279	-	Smar_0368	-	hypothetical protein
367	 36.05	0	389678..390634	-	318	126465280	-	Smar_0369	-	hypothetical protein
368	 32.35	-1	390755..391264	+	169	126465281	-	Smar_0370	-	hypothetical protein
369	 38.26	0	391322..392113	-	263	126465282	-	Smar_0371	-	hypothetical protein
370	 32.74	0	392263..392601	-	112	126465283	-	Smar_0372	-	hypothetical protein
371	 39.53	+1	392695..393420	+	241	126465284	-	Smar_0373	-	PA14 domain-containing protein
372	 33.22	0	393443..394339	+	298	126465285	-	Smar_0374	-	auxin efflux carrier
373	 35.50	0	396159..396620	+	153	126465286	-	Smar_0375	-	hypothetical protein
374	 38.52	0	396812..398161	-	449	126465287	-	Smar_0376	-	Fmu (Sun) domain-containing protein
375	 37.04	0	398349..399158	+	269	126465288	-	Smar_0377	-	polysaccharide deacetylase
376	 32.29	-1	399166..399642	-	158	126465289	-	Smar_0378	-	hypothetical protein
377	 38.14	0	399717..400985	+	422	126465290	-	Smar_0379	-	cysteine desulfurase
378	 39.18	0	401047..401217	-	56	126465291	-	Smar_0380	-	paREP4
379	 40.04	+1	401555..402955	-	466	126465292	-	Smar_0381	-	amidohydrolase
380	 36.91	0	403103..404920	+	605	126465293	-	Smar_0382	-	adenine deaminase
381	 38.00	0	404980..405558	-	192	126465294	-	Smar_0383	-	ZPR1-related zinc finger protein
382	 35.56	0	405663..406562	+	299	126465295	-	Smar_0384	-	radical SAM domain-containing protein
383	 39.90	+1	406735..407343	+	202	126465296	-	Smar_0385	-	hexulose-6-phosphate isomerase
384	 35.43	0	407477..407857	+	126	126465297	-	Smar_0386	-	hypothetical protein
385	 39.15	0	407936..408382	+	148	126465298	-	Smar_0387	-	hypothetical protein
386	 23.97	-2	408386..408652	+	88	126465299	-	Smar_0388	-	hypothetical protein
387	 38.01	0	408793..409284	+	163	126465300	-	Smar_0389	-	hypothetical protein
388	 37.22	0	409291..410010	+	239	126465301	-	Smar_0390	-	ABC transporter related
389	 32.12	-1	409994..410569	+	191	126465302	-	Smar_0391	-	hypothetical protein
390	 34.64	0	410576..411034	-	152	126465303	-	Smar_0392	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
391	 39.50	+1	411039..412157	-	372	126465304	-	Smar_0393	-	peptidase M29, aminopeptidase II
392	 32.53	0	412317..414299	+	660	126465305	-	Smar_0394	-	hypothetical protein
393	 34.59	0	414417..415370	+	317	126465306	-	Smar_0395	-	triphosphoribosyl-dephospho-CoA protein
394	 35.80	0	415447..416379	+	310	126465307	-	Smar_0396	-	PP-loop domain-containing protein
395	 33.41	0	416391..417764	-	457	126465308	-	Smar_0397	-	hypothetical protein
396	 34.51	0	417862..418542	-	226	126465309	-	Smar_0398	-	adenylate kinase
397	 34.04	0	418655..418939	+	94	126465310	-	Smar_0399	-	hypothetical protein
398	 32.05	-1	418940..419485	-	181	126465311	-	Smar_0400	-	AsnC family transcriptional regulator
399	 36.09	0	419533..420258	-	241	126465312	-	Smar_0401	-	hypothetical protein
400	 32.65	0	420340..421356	-	338	126465313	-	Smar_0402	-	hypothetical protein
401	 38.42	0	421467..422135	-	222	126465314	-	Smar_0403	-	hypothetical protein
402	 34.92	0	422140..422895	-	251	126465315	-	Smar_0404	-	ABC transporter related
403	 35.45	0	422912..423430	-	172	126465316	-	Smar_0405	-	hypothetical protein
404	 33.51	0	423500..424054	+	184	126465317	-	Smar_0406	-	hypothetical protein
405	 37.83	0	424099..425232	+	377	126465318	-	Smar_0407	-	radical SAM domain-containing protein
406	 39.31	0	425345..426097	+	250	126465319	-	Smar_0408	-	hypothetical protein
407	 29.92	-1	426119..426382	+	87	126465320	-	Smar_0409	-	hypothetical protein
35.91	MEAN

3.41	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.