IslandPathversion 1.0

IslandPath Analysis: Staphylothermus marinus F1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.91 STD DEV: 3.41
Staphylothermus marinus F1, complete genome - 1..1570485
1570 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
165	 36.65	0	174437..175942	-	501	126465078	-	Smar_0166	-	peptidase M17, leucyl aminopeptidase domain-containing protein
166	 30.94	-1	176116..176616	+	166	126465079	-	Smar_0167	-	hypothetical protein
167	 32.48	-1	176644..177936	-	430	126465080	-	Smar_0168	-	ABC-type Na+ efflux pump permease component-like protein
168	 34.27	0	177936..178682	-	248	126465081	-	Smar_0169	-	ABC transporter related
169	 37.24	0	178884..179498	+	204	126465082	-	Smar_0170	-	nucleotidyl transferase
170	 37.63	0	179504..180643	+	379	126465083	-	Smar_0171	-	hydrogenase formation HypD protein
171	 33.21	0	180647..181477	-	276	126465084	-	Smar_0172	-	hypothetical protein
172	 35.11	0	181498..182793	-	431	126465085	-	Smar_0173	-	citrate transporter
173	 36.83	0	182912..183568	+	218	126465086	-	Smar_0174	-	uracil phosphoribosyltransferase
174	 33.65	0	183632..184588	-	318	126465087	-	Smar_0175	-	hypothetical protein
175	 34.68	0	184676..185416	-	246	126465088	-	Smar_0176	-	Mrp/NBP35 family nucleotide-binding protein
176	 34.79	0	185413..185823	-	136	126465089	hypA	Smar_0177	-	hydrogenase nickel incorporation protein
177	 40.39	+1	186040..187329	+	429	126465090	-	Smar_0178	-	hydroxymethylglutaryl-CoA reductase, degradative
178	 30.25	-1	187426..190926	-	1166	126465091	-	Smar_0179	-	hypothetical protein
179	 36.47	0	191052..191753	+	233	126465092	-	Smar_0180	-	flavoprotein involved in thiazole biosynthesis-like protein
180	 33.82	0	191746..192777	-	343	126465093	-	Smar_0181	-	glycosyl transferase family protein
181	 39.55	+1	192774..193481	-	235	126465094	-	Smar_0182	-	ERCC4 domain-containing protein
182	 37.72	0	193619..194962	-	447	126465095	-	Smar_0183	-	L-glutamine synthetase
183	 34.19	0	195076..195540	+	154	126465096	-	Smar_0184	-	AsnC family transcriptional regulator
184	 36.61	0	195556..196866	+	436	126465097	-	Smar_0185	-	threonine synthase
185	 39.42	+1	197025..197780	+	251	126465098	-	Smar_0186	-	hypothetical protein
186	 35.68	0	197758..199077	+	439	126465099	-	Smar_0187	-	ABC transporter related
187	 34.31	0	199068..199787	+	239	126465100	-	Smar_0188	-	hypothetical protein
188	 35.30	0	199908..200771	-	287	126465101	-	Smar_0189	-	radical SAM domain-containing protein
189	 33.74	0	200780..201754	-	324	126465102	-	Smar_0190	-	radical SAM domain-containing protein
190	 33.99	0	201888..202643	+	251	126465103	-	Smar_0191	-	biotin/lipoate A/B protein ligase
191	 31.94	-1	202648..202935	+	95	126465104	-	Smar_0192	-	hypothetical protein
192	 34.19	0	202936..203748	+	270	126465105	-	Smar_0193	-	hypothetical protein
193	 32.82	0	203755..204144	-	129	126465106	-	Smar_0194	-	iron dependent repressor
194	 36.22	0	204159..204956	-	265	126465107	-	Smar_0195	-	glutaredoxin-like protein
195	 34.52	0	205154..205996	+	280	126465108	-	Smar_0196	-	hypothetical protein
196	 33.58	0	205989..206783	-	264	126465109	-	Smar_0197	-	nuclease
197	 40.37	+1	206850..207944	-	364	126465110	-	Smar_0198	-	tRNA-modifying enzyme
198	 38.19	0	208081..208800	+	239	126465111	-	Smar_0199	-	hydrolase
199	 40.46	+1	208788..209306	-	172	126465112	-	Smar_0200	-	PBP family phospholipid-binding protein
200	 35.92	0	209536..212049	+	837	126465113	-	Smar_0201	-	nucleotidyl transferase
201	 37.02	0	212137..212868	+	243	126465114	-	Smar_0202	-	NADPH-dependent FMN reductase
202	 34.18	0	212899..213609	-	236	126465115	-	Smar_0203	-	glycerol-3-phosphate cytidylyltransferase
203	 34.12	0	213758..215527	+	589	126465116	-	Smar_0204	-	arginine decarboxylase
204	 27.92	-2	215542..215781	-	79	126465117	-	Smar_0205	-	AsnC family transcriptional regulator
205	 35.78	0	215862..217412	-	516	126465118	-	Smar_0206	-	radical SAM domain-containing protein
206	 36.22	0	217540..218925	-	461	126465119	-	Smar_0207	-	TM helix repeat-containing protein
207	 35.82	0	220005..220205	+	66	126465120	-	Smar_0208	-	hypothetical protein
208	 36.08	0	220210..222360	-	716	126465121	-	Smar_0209	-	DEAD/DEAH box helicase domain-containing protein
209	 38.80	0	222461..224437	+	658	126465122	-	Smar_0210	-	molybdenum cofactor synthesis domain-containing protein
210	 29.02	-2	224424..225212	-	262	126465123	-	Smar_0211	-	hypothetical protein
211	 35.43	0	225221..225649	-	142	126465124	-	Smar_0212	-	hypothetical protein
212	 33.93	0	225746..226081	+	111	126465125	-	Smar_0213	-	hypothetical protein
213	 36.62	0	226137..226958	+	273	126465126	-	Smar_0214	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
214	 34.13	0	226985..227485	-	166	126465127	-	Smar_0215	-	hypothetical protein
215	 33.80	0	227469..228767	-	432	126465128	-	Smar_0216	-	amidohydrolase
216	 33.81	0	228799..229215	-	138	126465129	-	Smar_0217	-	hypothetical protein
217	 34.97	0	229273..230247	-	324	126465130	-	Smar_0218	-	mevalonate kinase
218	 31.41	-1	230334..231530	-	398	126465131	-	Smar_0219	-	hypothetical protein
219	 38.19	0	231694..232557	+	287	126465132	-	Smar_0220	-	MRP protein-like protein
220	 35.55	0	232694..233371	+	225	126465133	-	Smar_0221	-	hypothetical protein
221	 35.12	0	233376..233936	-	186	126465134	-	Smar_0222	-	hypothetical protein
222	 38.32	0	234197..236602	-	801	126465135	-	Smar_0223	-	oligosaccharyl transferase, STT3 subunit
223	 39.79	+1	236717..237661	-	314	126465136	-	Smar_0224	-	ornithine carbamoyltransferase
224	 33.33	0	237663..238856	-	397	126465137	-	Smar_0225	-	major facilitator transporter
225	 29.89	-1	238859..240340	-	493	126465138	-	Smar_0226	-	hypothetical protein
226	 41.99	+1	240534..241607	+	357	126465139	-	Smar_0227	-	N-acetylornithine carbamoyltransferase
227	 34.10	0	241793..242317	-	174	126465140	-	Smar_0228	-	hypothetical protein
228	 38.89	0	242792..243061	+	89	126465141	-	Smar_0229	-	hypothetical protein
229	 30.16	-1	243280..244257	-	325	126465142	-	Smar_0230	-	hypothetical protein
230	 35.14	0	244304..245245	-	313	126465143	-	Smar_0231	-	metallo-beta-lactamase superfamily hydrolase
231	 31.96	-1	245434..245796	+	120	126465144	-	Smar_0232	-	hypothetical protein
232	 36.15	0	246018..246797	+	259	126465145	-	Smar_0233	-	radical SAM domain-containing protein
233	 34.89	0	246808..247962	-	384	126465146	-	Smar_0234	-	hypothetical protein
234	 40.64	+1	248175..249146	+	323	126465147	-	Smar_0235	-	carbamate kinase-like carbamoyl phosphate synthetase
235	 38.51	0	249342..250733	+	463	126465148	-	Smar_0236	-	amidohydrolase
236	 43.92	+2	250999..251187	+	62	126465149	-	Smar_0237	-	hypothetical protein
237	 40.21	+1	251539..252759	+	406	126465150	-	Smar_0238	-	dihydroorotate dehydrogenase family protein
238	 32.97	0	252912..253466	+	184	126465151	-	Smar_0239	-	hypothetical protein
239	 36.08	0	253585..254820	+	411	126465152	pgk	Smar_0240	-	phosphoglycerate kinase
240	 36.10	0	254891..255937	+	348	126465153	-	Smar_0241	-	glyceraldehyde-3-phosphate dehydrogenase
241	 35.92	0	255990..256415	+	141	126465154	-	Smar_0242	-	UspA domain-containing protein
242	 34.60	0	256443..257309	-	288	126465155	-	Smar_0243	-	6-phosphogluconate dehydrogenase, NAD-binding
243	 38.97	0	257326..257733	-	135	126465156	-	Smar_0244	-	cupin 2 domain-containing protein
244	 27.96	-2	257855..258133	-	92	126465157	-	Smar_0245	-	hypothetical protein
245	 36.03	0	258213..259730	-	505	126465158	-	Smar_0246	-	glycosyl transferase, group 1
246	 31.57	-1	259863..260429	+	188	126465159	-	Smar_0247	-	isochorismatase hydrolase
247	 34.72	0	260454..261533	+	359	126465160	-	Smar_0248	-	SufBD protein
248	 36.94	0	261675..263309	+	544	126465161	-	Smar_0249	-	aminopeptidases-like protein
249	 35.24	0	263395..265071	+	558	126465162	pheT	Smar_0250	-	phenylalanyl-tRNA synthetase subunit beta
250	 34.87	0	265142..266314	-	390	126465163	-	Smar_0251	-	sodium/hydrogen exchanger
251	 37.38	0	266322..267458	-	378	126465164	-	Smar_0252	-	hypothetical protein
252	 35.52	0	267574..269535	+	653	126465165	-	Smar_0253	-	hypothetical protein
253	 32.57	0	269737..270651	-	304	126465166	-	Smar_0254	-	radical SAM domain-containing protein
254	 34.05	0	270717..271964	-	415	126465167	-	Smar_0255	-	Fmu (Sun) domain-containing protein
255	 38.64	0	271967..272626	-	219	126465168	-	Smar_0256	-	hypothetical protein
256	 39.49	+1	272657..274216	-	519	126465169	pheS	Smar_0257	-	phenylalanyl-tRNA synthetase subunit alpha
257	 36.38	0	274482..275960	+	492	126465170	-	Smar_0258	-	FAD dependent oxidoreductase
258	 38.36	0	275967..277220	+	417	126465171	-	Smar_0259	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
259	 34.67	0	277217..277591	+	124	126465172	-	Smar_0260	-	hypothetical protein
260	 34.05	0	277609..278304	-	231	126465173	-	Smar_0261	-	glycerophosphoryl diester phosphodiesterase
261	 35.30	0	278398..279312	+	304	126465174	-	Smar_0262	-	peptidase S15
262	 37.22	0	279309..280595	+	428	126465175	-	Smar_0263	-	major facilitator transporter
263	 39.11	0	280629..282203	-	524	126465176	-	Smar_0264	-	glycerol kinase
264	 31.01	-1	282330..282716	-	128	126465177	-	Smar_0265	-	hypothetical protein
35.91	MEAN

3.41	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.