IslandPathversion 1.0

IslandPath Analysis: Staphylothermus marinus F1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.91 STD DEV: 3.41
Staphylothermus marinus F1, complete genome - 1..1570485
1570 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
131	 38.11	0	133800..135347	+	515	126465044	-	Smar_0132	-	ABC transporter related
132	 36.58	0	135369..136445	+	358	126465045	-	Smar_0133	-	inner-membrane translocator
133	 43.12	+2	136451..137359	+	302	126465046	-	Smar_0134	-	inner-membrane translocator
134	 29.56	-1	137527..138426	+	299	126465047	-	Smar_0135	-	hypothetical protein
135	 41.06	+1	138588..138833	+	81	126465048	-	Smar_0136	-	ferredoxin
136	 36.27	0	138873..140096	-	407	126465049	-	Smar_0137	-	hypothetical protein
137	 39.95	+1	140296..141534	+	412	126465050	-	Smar_0138	-	succinyl-diaminopimelate desuccinylase
138	 31.47	-1	141569..142264	+	231	126465051	-	Smar_0139	-	hypothetical protein
139	 36.76	0	142423..143967	+	514	126465052	-	Smar_0140	-	pyruvate carboxylase subunit A
140	 40.68	+1	144204..146708	+	834	126465053	-	Smar_0141	-	phosphoenolpyruvate synthase
141	 39.49	+1	146888..148219	+	443	126465054	-	Smar_0142	-	hypothetical protein
142	 34.65	0	148226..149665	-	479	126465055	-	Smar_0143	-	hypothetical protein
143	 38.75	0	149864..151432	+	522	126465056	-	Smar_0144	-	ATPase
144	 41.87	+1	151561..153447	+	628	126465057	-	Smar_0145	-	carbon starvation protein CstA
145	 34.77	0	153530..153808	+	92	126465058	-	Smar_0146	-	hypothetical protein
146	 33.54	0	153819..154808	+	329	126465059	-	Smar_0147	-	anion-transporting ATPase
147	 32.87	0	154808..155452	+	214	126465060	-	Smar_0148	-	hypothetical protein
148	 34.24	0	155449..155889	-	146	126465061	-	Smar_0149	-	holliday junction resolvase
149	 38.44	0	155979..158150	+	723	126465062	-	Smar_0150	-	metallophosphoesterase
150	 40.88	+1	158234..161044	-	936	126465063	-	Smar_0151	-	membrane-anchored protein to be involved in regulation of amylopullulanase-like protein
151	 41.09	+1	161230..163008	+	592	126465064	-	Smar_0152	-	extracellular solute-binding protein
152	 37.09	0	163211..165418	+	735	126465065	-	Smar_0153	-	binding-protein-dependent transport systems inner membrane component
153	 37.95	0	165449..166531	+	360	126465066	-	Smar_0154	-	ABC transporter related
154	 29.65	-1	166535..167158	+	207	126465067	-	Smar_0155	-	metal dependent phosphohydrolase
155	 37.87	0	167241..168077	+	278	126465068	-	Smar_0156	-	SPFH domain-containing protein/band 7 family protein
156	 35.44	0	168086..169417	+	443	126465069	-	Smar_0157	-	nodulation efficiency protein NfeD
157	 36.60	0	169423..170004	-	193	126465070	-	Smar_0158	-	phosphodiesterase
158	 31.74	-1	169995..170684	-	229	126465071	-	Smar_0159	-	hypothetical protein
159	 29.42	-1	170884..171624	-	246	126465072	-	Smar_0160	-	Mn2+-dependent serine/threonine protein kinase
160	 35.05	0	171643..171933	-	96	126465073	-	Smar_0161	-	hypothetical protein
161	 37.93	0	172060..172320	+	86	126465074	-	Smar_0162	-	50S ribosomal protein L13e
162	 29.70	-1	172626..172955	+	109	126465075	-	Smar_0163	-	hypothetical protein
163	 39.68	+1	173038..173415	-	125	126465076	-	Smar_0164	-	transcriptional regulator, TrmB
164	 34.23	0	173735..174400	+	221	126465077	-	Smar_0165	-	hypothetical protein
165	 36.65	0	174437..175942	-	501	126465078	-	Smar_0166	-	peptidase M17, leucyl aminopeptidase domain-containing protein
166	 30.94	-1	176116..176616	+	166	126465079	-	Smar_0167	-	hypothetical protein
167	 32.48	-1	176644..177936	-	430	126465080	-	Smar_0168	-	ABC-type Na+ efflux pump permease component-like protein
168	 34.27	0	177936..178682	-	248	126465081	-	Smar_0169	-	ABC transporter related
169	 37.24	0	178884..179498	+	204	126465082	-	Smar_0170	-	nucleotidyl transferase
170	 37.63	0	179504..180643	+	379	126465083	-	Smar_0171	-	hydrogenase formation HypD protein
171	 33.21	0	180647..181477	-	276	126465084	-	Smar_0172	-	hypothetical protein
172	 35.11	0	181498..182793	-	431	126465085	-	Smar_0173	-	citrate transporter
173	 36.83	0	182912..183568	+	218	126465086	-	Smar_0174	-	uracil phosphoribosyltransferase
174	 33.65	0	183632..184588	-	318	126465087	-	Smar_0175	-	hypothetical protein
175	 34.68	0	184676..185416	-	246	126465088	-	Smar_0176	-	Mrp/NBP35 family nucleotide-binding protein
176	 34.79	0	185413..185823	-	136	126465089	hypA	Smar_0177	-	hydrogenase nickel incorporation protein
177	 40.39	+1	186040..187329	+	429	126465090	-	Smar_0178	-	hydroxymethylglutaryl-CoA reductase, degradative
178	 30.25	-1	187426..190926	-	1166	126465091	-	Smar_0179	-	hypothetical protein
179	 36.47	0	191052..191753	+	233	126465092	-	Smar_0180	-	flavoprotein involved in thiazole biosynthesis-like protein
180	 33.82	0	191746..192777	-	343	126465093	-	Smar_0181	-	glycosyl transferase family protein
181	 39.55	+1	192774..193481	-	235	126465094	-	Smar_0182	-	ERCC4 domain-containing protein
182	 37.72	0	193619..194962	-	447	126465095	-	Smar_0183	-	L-glutamine synthetase
183	 34.19	0	195076..195540	+	154	126465096	-	Smar_0184	-	AsnC family transcriptional regulator
184	 36.61	0	195556..196866	+	436	126465097	-	Smar_0185	-	threonine synthase
185	 39.42	+1	197025..197780	+	251	126465098	-	Smar_0186	-	hypothetical protein
186	 35.68	0	197758..199077	+	439	126465099	-	Smar_0187	-	ABC transporter related
187	 34.31	0	199068..199787	+	239	126465100	-	Smar_0188	-	hypothetical protein
188	 35.30	0	199908..200771	-	287	126465101	-	Smar_0189	-	radical SAM domain-containing protein
189	 33.74	0	200780..201754	-	324	126465102	-	Smar_0190	-	radical SAM domain-containing protein
190	 33.99	0	201888..202643	+	251	126465103	-	Smar_0191	-	biotin/lipoate A/B protein ligase
191	 31.94	-1	202648..202935	+	95	126465104	-	Smar_0192	-	hypothetical protein
192	 34.19	0	202936..203748	+	270	126465105	-	Smar_0193	-	hypothetical protein
193	 32.82	0	203755..204144	-	129	126465106	-	Smar_0194	-	iron dependent repressor
194	 36.22	0	204159..204956	-	265	126465107	-	Smar_0195	-	glutaredoxin-like protein
195	 34.52	0	205154..205996	+	280	126465108	-	Smar_0196	-	hypothetical protein
196	 33.58	0	205989..206783	-	264	126465109	-	Smar_0197	-	nuclease
197	 40.37	+1	206850..207944	-	364	126465110	-	Smar_0198	-	tRNA-modifying enzyme
198	 38.19	0	208081..208800	+	239	126465111	-	Smar_0199	-	hydrolase
199	 40.46	+1	208788..209306	-	172	126465112	-	Smar_0200	-	PBP family phospholipid-binding protein
200	 35.92	0	209536..212049	+	837	126465113	-	Smar_0201	-	nucleotidyl transferase
201	 37.02	0	212137..212868	+	243	126465114	-	Smar_0202	-	NADPH-dependent FMN reductase
202	 34.18	0	212899..213609	-	236	126465115	-	Smar_0203	-	glycerol-3-phosphate cytidylyltransferase
203	 34.12	0	213758..215527	+	589	126465116	-	Smar_0204	-	arginine decarboxylase
204	 27.92	-2	215542..215781	-	79	126465117	-	Smar_0205	-	AsnC family transcriptional regulator
205	 35.78	0	215862..217412	-	516	126465118	-	Smar_0206	-	radical SAM domain-containing protein
206	 36.22	0	217540..218925	-	461	126465119	-	Smar_0207	-	TM helix repeat-containing protein
207	 35.82	0	220005..220205	+	66	126465120	-	Smar_0208	-	hypothetical protein
208	 36.08	0	220210..222360	-	716	126465121	-	Smar_0209	-	DEAD/DEAH box helicase domain-containing protein
209	 38.80	0	222461..224437	+	658	126465122	-	Smar_0210	-	molybdenum cofactor synthesis domain-containing protein
210	 29.02	-2	224424..225212	-	262	126465123	-	Smar_0211	-	hypothetical protein
211	 35.43	0	225221..225649	-	142	126465124	-	Smar_0212	-	hypothetical protein
212	 33.93	0	225746..226081	+	111	126465125	-	Smar_0213	-	hypothetical protein
213	 36.62	0	226137..226958	+	273	126465126	-	Smar_0214	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
214	 34.13	0	226985..227485	-	166	126465127	-	Smar_0215	-	hypothetical protein
215	 33.80	0	227469..228767	-	432	126465128	-	Smar_0216	-	amidohydrolase
216	 33.81	0	228799..229215	-	138	126465129	-	Smar_0217	-	hypothetical protein
217	 34.97	0	229273..230247	-	324	126465130	-	Smar_0218	-	mevalonate kinase
218	 31.41	-1	230334..231530	-	398	126465131	-	Smar_0219	-	hypothetical protein
219	 38.19	0	231694..232557	+	287	126465132	-	Smar_0220	-	MRP protein-like protein
220	 35.55	0	232694..233371	+	225	126465133	-	Smar_0221	-	hypothetical protein
221	 35.12	0	233376..233936	-	186	126465134	-	Smar_0222	-	hypothetical protein
222	 38.32	0	234197..236602	-	801	126465135	-	Smar_0223	-	oligosaccharyl transferase, STT3 subunit
223	 39.79	+1	236717..237661	-	314	126465136	-	Smar_0224	-	ornithine carbamoyltransferase
224	 33.33	0	237663..238856	-	397	126465137	-	Smar_0225	-	major facilitator transporter
225	 29.89	-1	238859..240340	-	493	126465138	-	Smar_0226	-	hypothetical protein
226	 41.99	+1	240534..241607	+	357	126465139	-	Smar_0227	-	N-acetylornithine carbamoyltransferase
227	 34.10	0	241793..242317	-	174	126465140	-	Smar_0228	-	hypothetical protein
228	 38.89	0	242792..243061	+	89	126465141	-	Smar_0229	-	hypothetical protein
229	 30.16	-1	243280..244257	-	325	126465142	-	Smar_0230	-	hypothetical protein
230	 35.14	0	244304..245245	-	313	126465143	-	Smar_0231	-	metallo-beta-lactamase superfamily hydrolase
35.91	MEAN

3.41	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.