IslandPathversion 1.0

IslandPath Analysis: Staphylothermus marinus F1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.91 STD DEV: 3.41
Staphylothermus marinus F1, complete genome - 1..1570485
1570 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1471	 30.34	-1	1467185..1467952	-	255	126466384	-	Smar_1496	-	hypothetical protein
1472	 36.30	0	1468042..1468344	-	100	126466385	-	Smar_1497	-	hypothetical protein
1473	 35.05	0	1468395..1468685	-	96	126466386	-	Smar_1498	-	hypothetical protein
1474	 37.04	0	1468974..1470617	+	547	126466387	-	Smar_1499	-	hypothetical protein
1475	 33.13	0	1470657..1471148	+	163	126466388	-	Smar_1500	-	hypothetical protein
1476	 33.68	0	1471261..1472136	+	291	126466389	-	Smar_1501	-	hypothetical protein
1477	 35.94	0	1472268..1472804	+	178	126466390	-	Smar_1502	-	hypothetical protein
1478	 34.59	0	1472810..1473286	-	158	126466391	-	Smar_1503	-	oxaloacetate decarboxylase gamma subunit
1479	 39.81	+1	1473306..1474385	-	359	126466392	-	Smar_1504	-	oxaloacetate decarboxylase beta subunit
1480	 36.40	0	1474496..1475344	-	282	126466393	-	Smar_1505	-	peptidase M55, D-aminopeptidase
1481	 29.52	-1	1475382..1476797	-	471	126466394	-	Smar_1506	-	hypothetical protein
1482	 36.39	0	1477486..1477878	+	130	126466395	-	Smar_1507	-	thioesterase superfamily protein
1483	 33.33	0	1478011..1478388	+	125	126466396	-	Smar_1508	-	hypothetical protein
1484	 36.43	0	1478413..1478799	+	128	126466397	-	Smar_1509	-	hypothetical protein
1485	 39.76	+1	1478816..1480339	+	507	126466398	-	Smar_1510	-	radical SAM domain-containing protein
1486	 36.46	0	1480454..1481956	+	500	126466399	-	Smar_1511	-	methionyl-tRNA synthetase
1487	 32.24	-1	1481958..1482140	-	60	126466400	-	Smar_1512	-	hypothetical protein
1488	 34.82	0	1482730..1483335	+	201	126466401	-	Smar_1513	-	hypothetical protein
1489	 38.56	0	1483377..1484351	+	324	126466402	-	Smar_1514	-	glucokinase
1490	 38.93	0	1484418..1486634	+	738	126466403	-	Smar_1515	-	hypothetical protein
1491	 34.00	0	1486636..1487991	-	451	126466404	-	Smar_1516	-	hypothetical protein
1492	 39.79	+1	1488076..1489035	+	319	126466405	-	Smar_1517	-	asparaginase
1493	 32.39	-1	1489103..1489738	+	211	126466406	-	Smar_1518	-	methyltransferase type 12
1494	 37.87	0	1489909..1491009	+	366	126466407	-	Smar_1519	-	glycosidase, PH1107-related
1495	 38.04	0	1491145..1492971	+	608	126466408	-	Smar_1520	-	glutamine--fructose-6-phosphate transaminase
1496	 40.79	+1	1492994..1494160	-	388	126466409	-	Smar_1521	-	N-acetylglucosamine 6-phosphate deacetylase
1497	 41.62	+1	1494551..1495069	+	172	126466410	-	Smar_1522	-	PaREP1/PaREP8 domain-contain protein
1498	 31.37	-1	1495272..1495526	+	84	126466411	-	Smar_1523	-	hypothetical protein
1499	 41.09	+1	1495504..1496766	+	420	126466412	-	Smar_1524	-	sodium:dicarboxylate symporter
1500	 54.59	+2	1497317..1497730	-	137	126466413	-	Smar_1525	-	hypothetical protein
1501	 40.77	+1	1497767..1498102	+	111	126466414	-	Smar_1526	-	putative aminotransferase protein
1502	 44.16	+2	1498627..1498857	+	76	126466415	-	Smar_1527	-	hypothetical protein
1503	 39.05	0	1498857..1499258	+	133	126466416	-	Smar_1528	-	hypothetical protein
1504	 48.19	+2	1500596..1501147	+	183	126466417	-	Smar_1530	-	hypothetical protein
1505	 46.37	+2	1501147..1501545	+	132	126466418	-	Smar_1531	-	PaREP1/PaREP8 domain-contain protein
1506	 44.13	+2	1503298..1503510	+	70	126466419	-	Smar_1533	-	hypothetical protein
1507	 39.58	+1	1503485..1503868	+	127	126466420	-	Smar_1534	-	PaREP1/PaREP8 domain-contain protein
1508	 47.27	+2	1504742..1504906	-	54	126466421	-	Smar_1536	-	hypothetical protein
1509	 38.79	0	1505123..1505653	-	176	126466422	-	Smar_1537	-	hypothetical protein
1510	 39.32	0	1506258..1506641	+	127	126466423	-	Smar_1538	-	hypothetical protein
1511	 39.92	+1	1506803..1508107	-	434	126466424	-	Smar_1539	-	polysaccharide biosynthesis protein
1512	 35.80	0	1508470..1508712	+	80	126466425	-	Smar_1540	-	hypothetical protein
1513	 31.09	-1	1508753..1509019	-	88	126466426	-	Smar_1541	-	hypothetical protein
1514	 41.10	+1	1509052..1509540	+	162	126466427	-	Smar_1542	-	ABC transporter related
1515	 36.38	0	1509519..1510208	+	229	126466428	-	Smar_1543	-	polar amino acid ABC transporter, inner membrane subunit
1516	 33.33	0	1510355..1510786	+	143	126466429	-	Smar_1544	-	hypothetical protein
1517	 33.33	0	1511274..1511642	+	122	126466430	-	Smar_1545	-	hypothetical protein
1518	 35.12	0	1511861..1513144	+	427	126466431	-	Smar_1546	-	IS605 family transposase OrfB
1519	 38.33	0	1513370..1513969	+	199	126466432	-	Smar_1547	-	PBP family phospholipid-binding protein
1520	 40.21	+1	1514304..1514681	-	125	126466433	-	Smar_1548	-	hypothetical protein
1521	 43.10	+2	1514695..1515114	-	139	126466434	-	Smar_1549	-	hypothetical protein
1522	 40.19	+1	1515250..1515672	+	140	126466435	-	Smar_1550	-	hypothetical protein
1523	 39.60	+1	1516177..1516623	+	148	126466436	-	Smar_1551	-	hypothetical protein
1524	 38.41	0	1516880..1517470	+	196	126466437	-	Smar_1552	-	hypothetical protein
1525	 40.00	+1	1517548..1517892	-	114	126466438	-	Smar_1553	-	DNA polymerase beta subunit
1526	 39.80	+1	1518206..1518715	+	169	126466439	-	Smar_1554	-	hypothetical protein
1527	 32.28	-1	1518840..1519694	+	284	126466440	-	Smar_1555	-	hypothetical protein
1528	 36.58	0	1519695..1520465	+	256	126466441	-	Smar_1556	-	hypothetical protein
1529	 35.85	0	1520829..1521503	+	224	126466442	-	Smar_1557	-	ABC transporter related
1530	 37.56	0	1521783..1522208	-	141	126466443	-	Smar_1558	-	hypothetical protein
1531	 39.95	+1	1522224..1522631	-	135	126466444	-	Smar_1559	-	DNA polymerase beta subunit
1532	 41.70	+1	1523212..1523880	+	222	126466445	-	Smar_1561	-	hypothetical protein
1533	 36.40	0	1523995..1525329	+	444	126466446	-	Smar_1562	-	hypothetical protein
1534	 43.06	+2	1525794..1526441	-	215	126466447	-	Smar_1563	-	hypothetical protein
1535	 40.36	+1	1526622..1527290	+	222	126466448	-	Smar_1564	-	ABC transporter related
1536	 34.07	0	1527313..1527720	-	135	126466449	-	Smar_1565	-	PilT domain-containing protein
1537	 41.13	+1	1527707..1527937	-	76	126466450	-	Smar_1566	-	CopG family transcriptional regulator
1538	 34.97	0	1528911..1529216	-	101	126466451	-	Smar_1568	-	hypothetical protein
1539	 49.50	+2	1529315..1529617	+	100	126466452	-	Smar_1569	-	hypothetical protein
1540	 40.92	+1	1529621..1531018	-	465	126466453	-	Smar_1570	-	ELP3 family histone acetyltransferase
1541	 34.58	0	1531167..1532285	+	372	126466454	-	Smar_1571	-	hypothetical protein
1542	 38.33	0	1532411..1533652	+	413	126466455	-	Smar_1572	-	molybdenum cofactor synthesis domain-containing protein
1543	 32.97	0	1533987..1534535	+	182	126466456	-	Smar_1573	-	hypothetical protein
1544	 30.49	-1	1534613..1538587	+	1324	126466457	-	Smar_1574	-	TPR repeat-containing protein
1545	 35.01	0	1538739..1539989	+	416	126466458	-	Smar_1575	-	hypothetical protein
1546	 38.63	0	1539965..1540984	+	339	126466459	-	Smar_1576	-	AIR synthase-like protein
1547	 32.31	-1	1541099..1542073	+	324	126466460	-	Smar_1577	-	Dual specificity protein phosphatase
1548	 32.05	-1	1542219..1542917	-	232	126466461	-	Smar_1578	-	hypothetical protein
1549	 45.89	+2	1543059..1543289	+	76	126466462	-	Smar_1579	-	FeoA family protein
1550	 37.35	0	1543310..1545400	+	696	126466463	-	Smar_1580	-	small GTP-binding protein
1551	 31.58	-1	1545508..1546134	+	208	126466464	-	Smar_1581	-	hypothetical protein
1552	 38.85	0	1546266..1548242	+	658	126466465	-	Smar_1582	-	glyceraldehyde-3-phosphate ferredoxin oxidoreductase
1553	 32.03	-1	1548290..1549744	+	484	126466466	-	Smar_1583	-	hypothetical protein
1554	 30.24	-1	1549941..1550747	+	268	126466467	-	Smar_1584	-	hypothetical protein
1555	 40.32	+1	1550893..1552881	+	662	126466468	-	Smar_1585	-	amylopullulanase
1556	 35.81	0	1552979..1553908	+	309	126466469	-	Smar_1586	-	radical SAM domain-containing protein
1557	 40.99	+1	1554679..1555122	+	147	126466470	-	Smar_1587	-	GTP cyclohydrolase subunit MoaC
1558	 35.15	0	1555256..1557568	+	770	126466471	-	Smar_1588	-	DALR anticodon binding domain-containing protein
1559	 36.55	0	1558019..1558639	+	206	126466472	-	Smar_1589	-	hypothetical protein
1560	 34.72	0	1558757..1559479	-	240	126466473	-	Smar_1590	-	hypothetical protein
1561	 40.40	+1	1559597..1560940	+	447	126466474	-	Smar_1591	-	4-aminobutyrate aminotransferase
1562	 38.92	0	1560943..1561551	-	202	126466475	-	Smar_1592	-	hypothetical protein
1563	 33.73	0	1561598..1562362	-	254	126466476	-	Smar_1593	-	hypothetical protein
1564	 35.67	0	1562373..1563656	-	427	126466477	-	Smar_1594	-	MoeA domain-containing protein
1565	 35.57	0	1564732..1565802	+	356	126466478	-	Smar_1595	-	major facilitator transporter
1566	 41.88	+1	1565887..1566717	-	276	126466479	-	Smar_1596	-	fructose-bisphosphate aldolase
1567	 33.82	0	1566806..1567624	-	272	126466480	-	Smar_1597	-	Mg2+ transporter protein, CorA family protein
1568	 38.49	0	1567748..1569241	-	497	126466481	-	Smar_1598	-	peptidase M32, carboxypeptidase Taq metallopeptidase
1569	 29.46	-1	1569487..1569615	+	42	126466482	-	Smar_1599	-	hypothetical protein
1570	 40.10	+1	1570273..1570479	+	68	126466483	-	Smar_1601	-	thiamineS protein
35.91	MEAN

3.41	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.