IslandPathversion 1.0

IslandPath Analysis: Staphylothermus marinus F1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.91 STD DEV: 3.41
Staphylothermus marinus F1, complete genome - 1..1570485
1570 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1416	 36.85	0	1412510..1413733	+	407	126466329	-	Smar_1440	-	hypothetical protein
1417	 34.93	0	1413742..1415121	-	459	126466330	-	Smar_1441	-	MATE efflux family protein
1418	 32.85	0	1415220..1415636	+	138	126466331	-	Smar_1442	-	transcriptional regulator PadR family protein
1419	 40.61	+1	1415823..1416701	-	292	126466332	-	Smar_1443	-	2-oxoacid ferredoxin oxidoreductase subunit beta
1420	 40.41	+1	1416723..1418489	-	588	126466333	-	Smar_1444	-	pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein
1421	 34.29	0	1418513..1418824	-	103	126466334	-	Smar_1445	-	hypothetical protein
1422	 36.90	0	1419150..1419485	+	111	126466335	-	Smar_1446	-	HTH DNA binding domain-containing protein
1423	 40.14	+1	1419712..1420269	+	185	126466336	-	Smar_1447	-	pyruvate ferredoxin oxidoreductase, gamma subunit
1424	 43.99	+2	1420275..1420565	+	96	126466337	-	Smar_1448	-	pyruvate ferredoxin oxidoreductase, delta subunit
1425	 41.19	+1	1420580..1421839	+	419	126466338	-	Smar_1449	-	pyruvate ferredoxin oxidoreductase, alpha subunit
1426	 42.78	+2	1421856..1422914	+	352	126466339	-	Smar_1450	-	pyruvate ferredoxin oxidoreductase, beta subunit
1427	 32.72	0	1423034..1423357	+	107	126466340	-	Smar_1451	-	AsnC family transcriptional regulator
1428	 29.73	-1	1423382..1423909	+	175	126466341	-	Smar_1452	-	hydrogenase maturation protease
1429	 35.23	0	1423890..1424999	-	369	126466342	-	Smar_1453	-	hypothetical protein
1430	 38.68	0	1425003..1425395	-	130	126466343	-	Smar_1454	-	S-adenosylmethionine decarboxylase related
1431	 36.90	0	1425650..1427050	+	466	126466344	-	Smar_1455	-	phosphoglucomutase/phosphomannomutase alpha/beta/subunit
1432	 34.97	0	1427051..1427233	-	60	126466345	-	Smar_1456	-	hypothetical protein
1433	 34.17	0	1427261..1428808	-	515	126466346	-	Smar_1457	-	amidohydrolase 3
1434	 37.79	0	1428884..1429444	+	186	126466347	-	Smar_1458	-	hypothetical protein
1435	 33.51	0	1429544..1430113	+	189	126466348	-	Smar_1459	-	CBS domain-containing protein
1436	 37.25	0	1431834..1432625	-	263	126466349	-	Smar_1461	-	molybdopterin-guanine dinucleotide biosynthesis MobB region
1437	 38.93	0	1432749..1434125	+	458	126466350	-	Smar_1462	-	geranylgeranyl reductase
1438	 32.59	0	1434119..1434658	+	179	126466351	-	Smar_1463	-	hypothetical protein
1439	 28.29	-2	1434680..1435888	+	402	126466352	-	Smar_1464	-	hypothetical protein
1440	 35.84	0	1435839..1436837	-	332	126466353	-	Smar_1465	-	phosphoesterase, DHHA1
1441	 29.22	-1	1437015..1437476	+	153	126466354	-	Smar_1466	-	hypothetical protein
1442	 32.56	0	1437589..1438365	+	258	126466355	-	Smar_1467	-	KaiC domain-containing protein
1443	 29.49	-1	1438366..1439718	+	450	126466356	-	Smar_1468	-	hypothetical protein
1444	 31.88	-1	1439846..1440604	+	252	126466357	-	Smar_1469	-	hypothetical protein
1445	 31.78	-1	1440727..1441626	+	299	126466358	-	Smar_1470	-	hypothetical protein
1446	 37.67	0	1441661..1444843	-	1060	126466359	-	Smar_1471	-	type II secretion system protein E
1447	 37.73	0	1445311..1447086	+	591	126466360	-	Smar_1472	-	type II secretion system protein
1448	 32.81	0	1447097..1447858	+	253	126466361	-	Smar_1473	-	hypothetical protein
1449	 32.94	0	1447858..1448367	+	169	126466362	-	Smar_1474	-	hypothetical protein
1450	 32.64	0	1448364..1449509	+	381	126466363	-	Smar_1475	-	hypothetical protein
1451	 33.33	0	1449506..1449892	+	128	126466364	-	Smar_1476	-	hypothetical protein
1452	 33.94	0	1449889..1451361	+	490	126466365	-	Smar_1477	-	hypothetical protein
1453	 36.05	0	1451386..1452342	-	318	126466366	-	Smar_1478	-	TrkA domain-containing protein
1454	 38.38	0	1452729..1452926	+	65	126466367	-	Smar_1479	-	helix-turn-helix, type 11 domain-containing protein
1455	 32.15	-1	1452981..1453319	-	112	126466368	-	Smar_1480	-	hypothetical protein
1456	 34.60	0	1453465..1455048	+	527	126466369	-	Smar_1481	-	metal-dependent phosphohydrolase, HD region
1457	 38.15	0	1455657..1455905	+	82	126466370	-	Smar_1482	-	hypothetical protein
1458	 38.58	0	1455902..1456339	+	145	126466371	-	Smar_1483	-	hypothetical protein
1459	 37.86	0	1456336..1456755	+	139	126466372	-	Smar_1484	-	hypothetical protein
1460	 34.88	0	1456715..1457488	+	257	126466373	-	Smar_1485	-	hypothetical protein
1461	 26.62	-2	1457497..1457898	-	133	126466374	-	Smar_1486	-	hypothetical protein
1462	 35.45	0	1457939..1458553	-	204	126466375	-	Smar_1487	-	peptidase M50
1463	 37.30	0	1458653..1459207	+	184	126466376	-	Smar_1488	-	cytidyltransferase-like protein
1464	 32.27	-1	1459239..1459898	+	219	126466377	-	Smar_1489	-	hypothetical protein
1465	 35.96	0	1459919..1460830	+	303	126466378	-	Smar_1490	-	biotin--acetyl-CoA-carboxylase ligase
1466	 38.22	0	1460833..1462203	-	456	126466379	-	Smar_1491	-	peptidase U62, modulator of DNA gyrase
1467	 40.16	+1	1462205..1463611	-	468	126466380	-	Smar_1492	-	peptidase U62, modulator of DNA gyrase
1468	 36.44	0	1463833..1464282	+	149	126466381	-	Smar_1493	-	hypothetical protein
1469	 44.87	+2	1464519..1464752	+	77	126466382	-	Smar_1494	-	hypothetical protein
1470	 40.14	+1	1464777..1467068	+	763	126466383	-	Smar_1495	-	DEAD/DEAH box helicase domain-containing protein
1471	 30.34	-1	1467185..1467952	-	255	126466384	-	Smar_1496	-	hypothetical protein
1472	 36.30	0	1468042..1468344	-	100	126466385	-	Smar_1497	-	hypothetical protein
1473	 35.05	0	1468395..1468685	-	96	126466386	-	Smar_1498	-	hypothetical protein
1474	 37.04	0	1468974..1470617	+	547	126466387	-	Smar_1499	-	hypothetical protein
1475	 33.13	0	1470657..1471148	+	163	126466388	-	Smar_1500	-	hypothetical protein
1476	 33.68	0	1471261..1472136	+	291	126466389	-	Smar_1501	-	hypothetical protein
1477	 35.94	0	1472268..1472804	+	178	126466390	-	Smar_1502	-	hypothetical protein
1478	 34.59	0	1472810..1473286	-	158	126466391	-	Smar_1503	-	oxaloacetate decarboxylase gamma subunit
1479	 39.81	+1	1473306..1474385	-	359	126466392	-	Smar_1504	-	oxaloacetate decarboxylase beta subunit
1480	 36.40	0	1474496..1475344	-	282	126466393	-	Smar_1505	-	peptidase M55, D-aminopeptidase
1481	 29.52	-1	1475382..1476797	-	471	126466394	-	Smar_1506	-	hypothetical protein
1482	 36.39	0	1477486..1477878	+	130	126466395	-	Smar_1507	-	thioesterase superfamily protein
1483	 33.33	0	1478011..1478388	+	125	126466396	-	Smar_1508	-	hypothetical protein
1484	 36.43	0	1478413..1478799	+	128	126466397	-	Smar_1509	-	hypothetical protein
1485	 39.76	+1	1478816..1480339	+	507	126466398	-	Smar_1510	-	radical SAM domain-containing protein
1486	 36.46	0	1480454..1481956	+	500	126466399	-	Smar_1511	-	methionyl-tRNA synthetase
1487	 32.24	-1	1481958..1482140	-	60	126466400	-	Smar_1512	-	hypothetical protein
1488	 34.82	0	1482730..1483335	+	201	126466401	-	Smar_1513	-	hypothetical protein
1489	 38.56	0	1483377..1484351	+	324	126466402	-	Smar_1514	-	glucokinase
1490	 38.93	0	1484418..1486634	+	738	126466403	-	Smar_1515	-	hypothetical protein
1491	 34.00	0	1486636..1487991	-	451	126466404	-	Smar_1516	-	hypothetical protein
1492	 39.79	+1	1488076..1489035	+	319	126466405	-	Smar_1517	-	asparaginase
1493	 32.39	-1	1489103..1489738	+	211	126466406	-	Smar_1518	-	methyltransferase type 12
1494	 37.87	0	1489909..1491009	+	366	126466407	-	Smar_1519	-	glycosidase, PH1107-related
1495	 38.04	0	1491145..1492971	+	608	126466408	-	Smar_1520	-	glutamine--fructose-6-phosphate transaminase
1496	 40.79	+1	1492994..1494160	-	388	126466409	-	Smar_1521	-	N-acetylglucosamine 6-phosphate deacetylase
1497	 41.62	+1	1494551..1495069	+	172	126466410	-	Smar_1522	-	PaREP1/PaREP8 domain-contain protein
1498	 31.37	-1	1495272..1495526	+	84	126466411	-	Smar_1523	-	hypothetical protein
1499	 41.09	+1	1495504..1496766	+	420	126466412	-	Smar_1524	-	sodium:dicarboxylate symporter
1500	 54.59	+2	1497317..1497730	-	137	126466413	-	Smar_1525	-	hypothetical protein
1501	 40.77	+1	1497767..1498102	+	111	126466414	-	Smar_1526	-	putative aminotransferase protein
1502	 44.16	+2	1498627..1498857	+	76	126466415	-	Smar_1527	-	hypothetical protein
1503	 39.05	0	1498857..1499258	+	133	126466416	-	Smar_1528	-	hypothetical protein
1504	 48.19	+2	1500596..1501147	+	183	126466417	-	Smar_1530	-	hypothetical protein
1505	 46.37	+2	1501147..1501545	+	132	126466418	-	Smar_1531	-	PaREP1/PaREP8 domain-contain protein
1506	 44.13	+2	1503298..1503510	+	70	126466419	-	Smar_1533	-	hypothetical protein
1507	 39.58	+1	1503485..1503868	+	127	126466420	-	Smar_1534	-	PaREP1/PaREP8 domain-contain protein
1508	 47.27	+2	1504742..1504906	-	54	126466421	-	Smar_1536	-	hypothetical protein
1509	 38.79	0	1505123..1505653	-	176	126466422	-	Smar_1537	-	hypothetical protein
1510	 39.32	0	1506258..1506641	+	127	126466423	-	Smar_1538	-	hypothetical protein
1511	 39.92	+1	1506803..1508107	-	434	126466424	-	Smar_1539	-	polysaccharide biosynthesis protein
1512	 35.80	0	1508470..1508712	+	80	126466425	-	Smar_1540	-	hypothetical protein
1513	 31.09	-1	1508753..1509019	-	88	126466426	-	Smar_1541	-	hypothetical protein
1514	 41.10	+1	1509052..1509540	+	162	126466427	-	Smar_1542	-	ABC transporter related
1515	 36.38	0	1509519..1510208	+	229	126466428	-	Smar_1543	-	polar amino acid ABC transporter, inner membrane subunit
35.91	MEAN

3.41	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.