IslandPathversion 1.0

IslandPath Analysis: Staphylothermus marinus F1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.91 STD DEV: 3.41
Staphylothermus marinus F1, complete genome - 1..1570485
1570 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1330	 34.87	0	1314261..1314650	-	129	126466243	-	Smar_1353	-	hypothetical protein
1331	 37.17	0	1314777..1316156	-	459	126466244	-	Smar_1354	-	seryl-tRNA synthetase
1332	 36.91	0	1316248..1316610	-	120	126466245	-	Smar_1355	-	hypothetical protein
1333	 33.33	0	1316784..1317122	-	112	126466246	-	Smar_1356	-	hypothetical protein
1334	 40.08	+1	1317127..1318119	-	330	126466247	-	Smar_1357	-	translation initiation factor IF-2B subunit delta
1335	 37.94	0	1318126..1319058	-	310	126466248	-	Smar_1358	-	initiation factor 2B related
1336	 32.88	0	1319095..1319985	-	296	126466249	-	Smar_1359	-	hypothetical protein
1337	 31.59	-1	1320125..1321849	+	574	126466250	-	Smar_1360	-	hypothetical protein
1338	 29.26	-1	1321836..1322351	-	171	126466251	-	Smar_1361	-	membrane-bound metal-dependent hydrolase
1339	 36.88	0	1322463..1323842	-	459	126466252	-	Smar_1362	-	hypothetical protein
1340	 37.87	0	1323846..1324838	-	330	126466253	-	Smar_1363	-	putative deoxyhypusine synthase
1341	 32.12	-1	1325108..1325767	+	219	126466254	-	Smar_1364	-	hypothetical protein
1342	 36.59	0	1325860..1326597	+	245	126466255	-	Smar_1365	-	DNA polymerase sliding clamp subunit A
1343	 40.72	+1	1326826..1329060	+	744	126466256	-	Smar_1366	-	type I phosphodiesterase/nucleotide pyrophosphatase
1344	 30.03	-1	1329324..1329929	+	201	126466257	-	Smar_1367	-	hypothetical protein
1345	 39.20	0	1330013..1331155	+	380	126466258	-	Smar_1368	-	PhoH family protein
1346	 41.95	+1	1331174..1331440	+	88	126466259	-	Smar_1369	-	hypothetical protein
1347	 39.89	+1	1331709..1333019	+	436	126466260	asnC	Smar_1370	-	asparaginyl-tRNA synthetase
1348	 34.93	0	1333032..1333718	+	228	126466261	-	Smar_1371	-	HhH-GPD family protein
1349	 31.42	-1	1334207..1334467	+	86	126466262	-	Smar_1372	-	hypothetical protein
1350	 31.91	-1	1334878..1335300	+	140	126466263	-	Smar_1373	-	hypothetical protein
1351	 34.57	0	1335274..1336245	-	323	126466264	-	Smar_1374	-	oxidoreductase, molybdopterin binding
1352	 34.60	0	1336364..1337551	+	395	126466265	-	Smar_1375	-	major facilitator transporter
1353	 35.42	0	1337570..1338430	+	286	126466266	-	Smar_1376	-	methyltransferase
1354	 37.33	0	1338651..1339226	-	191	126466267	-	Smar_1377	-	SSU ribosomal protein S18P alanine acetyltransferase
1355	 37.10	0	1339455..1340675	+	406	126466268	-	Smar_1378	-	phosphopantothenoylcysteine decarboxylase / phosphopantothenate-cysteine ligase
1356	 41.15	+1	1340672..1341451	-	259	126466269	-	Smar_1379	-	hypothetical protein
1357	 34.52	0	1341435..1342277	-	280	126466270	-	Smar_1380	-	pantothenate kinase
1358	 38.11	0	1342278..1343093	-	271	126466271	-	Smar_1381	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
1359	 33.01	0	1343132..1344067	-	311	126466272	-	Smar_1382	-	2-dehydropantoate 2-reductase
1360	 35.52	0	1344141..1345010	-	289	126466273	-	Smar_1383	-	Fis family transcriptional regulator
1361	 37.24	0	1345028..1345693	-	221	126466274	-	Smar_1384	-	hypothetical protein
1362	 34.69	0	1345812..1346549	+	245	126466275	-	Smar_1385	-	ABC transporter related
1363	 34.68	0	1346546..1347808	+	420	126466276	-	Smar_1386	-	ABC-2 type transporter
1364	 30.54	-1	1347979..1348479	+	166	126466277	-	Smar_1387	-	regulatory protein, MarR
1365	 34.65	0	1348503..1349945	+	480	126466278	-	Smar_1388	-	hypothetical protein
1366	 37.78	0	1350001..1351551	+	516	126466279	-	Smar_1389	-	glycoside hydrolase family protein
1367	 37.93	0	1351638..1352963	+	441	126466280	-	Smar_1390	-	major facilitator transporter
1368	 33.57	0	1352969..1354234	-	421	126466281	-	Smar_1391	-	glycoside hydrolase family protein
1369	 38.04	0	1354425..1356356	+	643	126466282	-	Smar_1392	-	glycoside hydrolase family protein
1370	 34.35	0	1356378..1358042	+	554	126466283	-	Smar_1393	-	glycosyl transferase, group 1
1371	 33.59	0	1358023..1358406	+	127	126466284	-	Smar_1394	-	hypothetical protein
1372	 34.28	0	1358420..1359268	+	282	126466285	-	Smar_1395	-	hypothetical protein
1373	 33.61	0	1359258..1359620	+	120	126466286	-	Smar_1396	-	hypothetical protein
1374	 38.82	0	1359723..1361546	+	607	126466287	-	Smar_1397	-	hypothetical protein
1375	 36.15	0	1361656..1366086	+	1476	126466288	-	Smar_1398	-	hypothetical protein
1376	 39.39	+1	1366192..1368222	+	676	126466289	-	Smar_1399	-	hypothetical protein
1377	 39.21	0	1368378..1370333	+	651	126466290	-	Smar_1400	-	oligopeptide transporter OPT superfamily protein
1378	 36.40	0	1370431..1372944	+	837	126466291	-	Smar_1401	-	glycoside hydrolase family protein
1379	 31.88	-1	1372970..1373521	+	183	126466292	-	Smar_1402	-	hypothetical protein
1380	 35.93	0	1373505..1374236	-	243	126466293	-	Smar_1403	-	ABC transporter related
1381	 38.56	0	1374236..1375000	-	254	126466294	-	Smar_1404	-	ABC transporter related
1382	 35.92	0	1375759..1376145	+	128	126466295	-	Smar_1406	-	hypothetical protein
1383	 34.48	0	1376161..1378080	+	639	126466296	-	Smar_1407	-	glycoside hydrolase family protein
1384	 26.48	-2	1378222..1378965	+	247	126466297	-	Smar_1408	-	hypothetical protein
1385	 29.27	-1	1379149..1379616	+	155	126466298	-	Smar_1409	-	LexA DNA-binding domain-containing protein
1386	 35.56	0	1379663..1380604	+	313	126466299	-	Smar_1410	-	hypothetical protein
1387	 38.98	0	1380843..1384880	+	1345	126466300	-	Smar_1411	-	subtilisin-like protein
1388	 35.02	0	1385014..1385487	+	157	126466301	-	Smar_1412	-	small multidrug export protein (QacE)
1389	 32.96	0	1385573..1386109	+	178	126466302	-	Smar_1413	-	hypothetical protein
1390	 29.81	-1	1386280..1387158	+	292	126466303	-	Smar_1414	-	hypothetical protein
1391	 33.71	0	1387136..1388467	-	443	126466304	-	Smar_1415	-	von Willebrand factor, type A
1392	 36.13	0	1388481..1389626	-	381	126466305	-	Smar_1416	-	ATPase
1393	 39.67	+1	1389784..1390083	-	99	126466306	-	Smar_1417	-	hypothetical protein
1394	 32.03	-1	1390165..1390623	+	152	126466307	-	Smar_1418	-	hypothetical protein
1395	 40.69	+1	1390720..1391181	+	153	126466308	-	Smar_1419	-	single-strand DNA-binding protein
1396	 36.36	0	1391203..1391532	+	109	126466309	-	Smar_1420	-	hypothetical protein
1397	 30.91	-1	1391723..1393084	+	453	126466310	-	Smar_1421	-	hypothetical protein
1398	 32.27	-1	1393084..1393740	+	218	126466311	-	Smar_1422	-	hypothetical protein
1399	 32.89	0	1393792..1394928	+	378	126466312	-	Smar_1423	-	hypothetical protein
1400	 36.11	0	1394977..1395300	-	107	126466313	-	Smar_1424	-	hypothetical protein
1401	 42.54	+1	1395422..1396594	+	390	126466314	-	Smar_1425	-	thiolase
1402	 39.40	+1	1396682..1398247	+	521	126466315	-	Smar_1426	-	propionyl-CoA carboxylase carboxyltransferase subunit alpha / propionyl-CoA carboxylase carboxyltransferase subunit beta
1403	 33.15	0	1398257..1398793	-	178	126466316	-	Smar_1427	-	biotin/lipoyl attachment domain-containing protein
1404	 30.96	-1	1398955..1399671	+	238	126466317	-	Smar_1428	-	hypothetical protein
1405	 33.33	0	1399673..1400269	+	198	126466318	-	Smar_1429	-	hypothetical protein
1406	 35.61	0	1400266..1401453	+	395	126466319	-	Smar_1430	-	sodium/hydrogen exchanger
1407	 32.75	0	1401524..1402039	-	171	126466320	-	Smar_1431	-	hypothetical protein
1408	 36.14	0	1402039..1403073	-	344	126466321	-	Smar_1432	-	ribosomal RNA methyltransferase NOP2
1409	 34.75	0	1403093..1403797	-	234	126466322	-	Smar_1433	-	hypothetical protein
1410	 32.57	0	1403915..1404568	-	217	126466323	-	Smar_1434	-	hypothetical protein
1411	 34.14	0	1404653..1404901	-	82	126466324	-	Smar_1435	-	hypothetical protein
1412	 33.94	0	1404918..1406063	-	381	126466325	-	Smar_1436	-	ATP dependent DNA ligase
1413	 35.31	0	1406168..1407028	+	286	126466326	-	Smar_1437	-	spermine synthase / spermidine synthase
1414	 35.56	0	1407050..1407769	+	239	126466327	-	Smar_1438	-	ABC transporter related
1415	 33.20	0	1407846..1412504	+	1552	126466328	-	Smar_1439	-	hypothetical protein
1416	 36.85	0	1412510..1413733	+	407	126466329	-	Smar_1440	-	hypothetical protein
1417	 34.93	0	1413742..1415121	-	459	126466330	-	Smar_1441	-	MATE efflux family protein
1418	 32.85	0	1415220..1415636	+	138	126466331	-	Smar_1442	-	transcriptional regulator PadR family protein
1419	 40.61	+1	1415823..1416701	-	292	126466332	-	Smar_1443	-	2-oxoacid ferredoxin oxidoreductase subunit beta
1420	 40.41	+1	1416723..1418489	-	588	126466333	-	Smar_1444	-	pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein
1421	 34.29	0	1418513..1418824	-	103	126466334	-	Smar_1445	-	hypothetical protein
1422	 36.90	0	1419150..1419485	+	111	126466335	-	Smar_1446	-	HTH DNA binding domain-containing protein
1423	 40.14	+1	1419712..1420269	+	185	126466336	-	Smar_1447	-	pyruvate ferredoxin oxidoreductase, gamma subunit
1424	 43.99	+2	1420275..1420565	+	96	126466337	-	Smar_1448	-	pyruvate ferredoxin oxidoreductase, delta subunit
1425	 41.19	+1	1420580..1421839	+	419	126466338	-	Smar_1449	-	pyruvate ferredoxin oxidoreductase, alpha subunit
1426	 42.78	+2	1421856..1422914	+	352	126466339	-	Smar_1450	-	pyruvate ferredoxin oxidoreductase, beta subunit
1427	 32.72	0	1423034..1423357	+	107	126466340	-	Smar_1451	-	AsnC family transcriptional regulator
1428	 29.73	-1	1423382..1423909	+	175	126466341	-	Smar_1452	-	hydrogenase maturation protease
1429	 35.23	0	1423890..1424999	-	369	126466342	-	Smar_1453	-	hypothetical protein
35.91	MEAN

3.41	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.