IslandPath Analysis: Staphylothermus marinus F1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.91   STD DEV: 3.41
Staphylothermus marinus F1, complete genome - 1..1570485
1570 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
60	 35.63	0	54179..55831	+	550	126464973	-	Smar_0061	-	metal dependent phosphohydrolase
61	 32.75	0	55828..56169	-	113	126464974	-	Smar_0062	-	hypothetical protein
62	 37.33	0	56247..57047	-	266	126464975	-	Smar_0063	-	hypothetical protein
63	 35.70	0	57054..57857	-	267	126464976	-	Smar_0064	-	hypothetical protein
64	 38.04	0	57854..58852	-	332	126464977	-	Smar_0065	-	ABC transporter related
65	 38.40	0	59041..62217	+	1058	126464978	-	Smar_0066	-	isoleucyl-tRNA synthetase
66	 39.92	+1	62443..62685	+	80	126464979	-	Smar_0067	-	AbrB family transcriptional regulator
67	 31.80	-1	62664..63119	+	151	126464980	-	Smar_0068	-	PilT domain-containing protein
68	 35.56	0	63200..63604	+	134	126464981	-	Smar_0069	-	cytidine deaminase
69	 36.44	0	63647..64096	+	149	126464982	-	Smar_0070	-	hypothetical protein
70	 36.34	0	64701..65663	+	320	126464983	-	Smar_0071	-	ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein
71	 31.33	-1	65656..66402	+	248	126464984	-	Smar_0072	-	binding-protein-dependent transport systems inner membrane component
72	 37.72	0	66436..66891	-	151	126464985	-	Smar_0073	-	hypothetical protein
73	 34.43	0	66983..68254	+	423	126464986	-	Smar_0074	-	metallophosphoesterase
74	 32.73	0	68238..69563	+	441	126464987	-	Smar_0075	-	hypothetical protein
75	 36.67	0	69569..71575	+	668	126464988	-	Smar_0076	-	hypothetical protein
76	 31.85	-1	71572..74070	+	832	126464989	-	Smar_0077	-	SMC domain-containing protein
77	 34.32	0	74125..75039	+	304	126464990	-	Smar_0078	-	hypothetical protein
78	 37.67	0	75053..76228	-	391	126464991	-	Smar_0079	-	hypothetical protein
79	 34.89	0	76303..77007	-	234	126464992	-	Smar_0080	-	HAD family hydrolase
80	 36.25	0	77133..78299	+	388	126464993	-	Smar_0081	-	sodium/hydrogen exchanger
81	 33.02	0	78305..78622	+	105	126464994	-	Smar_0082	-	hypothetical protein
82	 36.19	0	78679..79902	+	407	126464995	-	Smar_0083	-	IS605 family transposase OrfB
83	 38.93	0	80139..81674	-	511	126464996	-	Smar_0084	-	nonphosphorylating glyceraldehyde-3-phosphate dehydrogenase
84	 35.53	0	82046..83275	-	409	126464997	-	Smar_0085	-	glycosyl transferase, group 1
85	 35.78	0	83385..83957	+	190	126464998	-	Smar_0086	-	transcriptional regulator, TrmB
86	 37.01	0	83999..84433	+	144	126464999	-	Smar_0087	-	hypothetical protein
87	 39.20	0	84430..85503	-	357	126465000	-	Smar_0088	-	ABC transporter related
88	 35.85	0	85511..86383	-	290	126465001	-	Smar_0089	-	binding-protein-dependent transport systems inner membrane component
89	 36.71	0	86380..87297	-	305	126465002	-	Smar_0090	-	binding-protein-dependent transport systems inner membrane component
90	 39.31	0	87323..88594	-	423	126465003	-	Smar_0091	-	extracellular solute-binding protein
91	 36.99	0	88808..89791	-	327	126465004	-	Smar_0092	-	dihydrodipicolinate reductase
92	 36.38	0	90033..90491	-	152	126465005	-	Smar_0093	-	thioredoxin domain-containing protein
93	 41.59	+1	90597..91868	+	423	126465006	-	Smar_0094	-	L-threonine synthase
94	 30.32	-1	91915..92412	-	165	126465007	-	Smar_0095	-	hypothetical protein
95	 35.00	0	92805..95918	-	1037	126465008	-	Smar_0096	-	DEAD/DEAH box helicase domain-containing protein
96	 32.26	-1	96044..97162	-	372	126465009	-	Smar_0097	-	glycosidase, PH1107-related
97	 38.94	0	97438..98739	-	433	126465010	-	Smar_0098	-	tryptophan synthase subunit beta
98	 30.28	-1	98814..99827	-	337	126465011	-	Smar_0099	-	hypothetical protein
99	 36.92	0	100061..101230	+	389	126465012	-	Smar_0100	-	aspartate aminotransferase
100	 32.86	0	101253..101675	-	140	126465013	-	Smar_0101	-	hypothetical protein
101	 31.89	-1	101709..102539	-	276	126465014	-	Smar_0102	-	glutamine amidotransferase-like protein
102	 33.33	0	102508..103068	-	186	126465015	-	Smar_0103	-	hypothetical protein
103	 37.34	0	103499..104122	+	207	126465016	-	Smar_0104	-	hypothetical protein
104	 36.05	0	104144..104659	-	171	126465017	-	Smar_0105	-	nitroreductase
105	 35.07	0	104808..105095	+	95	126465018	-	Smar_0106	-	hypothetical protein
106	 36.72	0	105305..106930	-	541	126465019	-	Smar_0107	-	lysyl-tRNA synthetase
107	 38.42	0	107474..109123	+	549	126465020	-	Smar_0108	-	extracellular solute-binding protein
108	 34.66	0	109136..110113	+	325	126465021	-	Smar_0109	-	binding-protein-dependent transport systems inner membrane component
109	 36.76	0	110113..110988	+	291	126465022	-	Smar_0110	-	binding-protein-dependent transport systems inner membrane component
110	 37.27	0	110993..112111	+	372	126465023	-	Smar_0111	-	ABC transporter related
111	 34.00	0	112186..112938	+	250	126465024	-	Smar_0112	-	glycosyl transferase family protein
112	 33.20	0	112935..114488	-	517	126465025	-	Smar_0113	-	hypothetical protein
113	 34.66	0	114485..115390	-	301	126465026	-	Smar_0114	-	ABC transporter related
114	 32.52	0	115640..116749	-	369	126465027	-	Smar_0115	-	SufBD protein
115	 37.22	0	116751..118166	-	471	126465028	-	Smar_0116	-	Iron-regulated ABC transporter membrane component SufB
116	 35.76	0	118169..118909	-	246	126465029	-	Smar_0117	-	FeS assembly ATPase SufC
117	 36.19	0	119115..122024	+	969	126465030	-	Smar_0118	-	leucyl-tRNA synthetase
118	 42.64	+1	122027..122359	-	110	126465031	-	Smar_0119	-	alkylhydroperoxidase
119	 34.17	0	122411..123730	-	439	126465032	-	Smar_0120	-	phosphoglucomutase/phosphomannomutase alpha/beta/subunit
120	 34.14	0	123737..124855	-	372	126465033	-	Smar_0121	-	nucleotidyl transferase
121	 41.92	+1	125089..125484	+	131	126465034	-	Smar_0122	-	hypothetical protein
122	 32.58	0	125741..126136	-	131	126465035	-	Smar_0123	-	hypothetical protein
123	 33.07	0	126117..126491	-	124	126465036	-	Smar_0124	-	hypothetical protein
124	 34.54	0	126741..127154	+	137	126465037	-	Smar_0125	-	hypothetical protein
125	 39.21	0	127721..129064	+	447	126465038	-	Smar_0126	-	amidohydrolase
126	 32.67	0	129113..129715	+	200	126465039	-	Smar_0127	-	multiple antibiotic resistance (MarC)-related proteins
127	 32.63	0	129687..130541	-	284	126465040	-	Smar_0128	-	cation diffusion facilitator family transporter
128	 34.76	0	130580..131209	-	209	126465041	-	Smar_0129	-	hypothetical protein
129	 36.93	0	131413..132051	+	212	126465042	-	Smar_0130	-	hypothetical protein
130	 41.85	+1	132266..133744	+	492	126465043	-	Smar_0131	-	basic membrane lipoprotein
131	 38.11	0	133800..135347	+	515	126465044	-	Smar_0132	-	ABC transporter related
132	 36.58	0	135369..136445	+	358	126465045	-	Smar_0133	-	inner-membrane translocator
133	 43.12	+2	136451..137359	+	302	126465046	-	Smar_0134	-	inner-membrane translocator
134	 29.56	-1	137527..138426	+	299	126465047	-	Smar_0135	-	hypothetical protein
135	 41.06	+1	138588..138833	+	81	126465048	-	Smar_0136	-	ferredoxin
136	 36.27	0	138873..140096	-	407	126465049	-	Smar_0137	-	hypothetical protein
137	 39.95	+1	140296..141534	+	412	126465050	-	Smar_0138	-	succinyl-diaminopimelate desuccinylase
138	 31.47	-1	141569..142264	+	231	126465051	-	Smar_0139	-	hypothetical protein
139	 36.76	0	142423..143967	+	514	126465052	-	Smar_0140	-	pyruvate carboxylase subunit A
140	 40.68	+1	144204..146708	+	834	126465053	-	Smar_0141	-	phosphoenolpyruvate synthase
141	 39.49	+1	146888..148219	+	443	126465054	-	Smar_0142	-	hypothetical protein
142	 34.65	0	148226..149665	-	479	126465055	-	Smar_0143	-	hypothetical protein
143	 38.75	0	149864..151432	+	522	126465056	-	Smar_0144	-	ATPase
144	 41.87	+1	151561..153447	+	628	126465057	-	Smar_0145	-	carbon starvation protein CstA
145	 34.77	0	153530..153808	+	92	126465058	-	Smar_0146	-	hypothetical protein
146	 33.54	0	153819..154808	+	329	126465059	-	Smar_0147	-	anion-transporting ATPase
147	 32.87	0	154808..155452	+	214	126465060	-	Smar_0148	-	hypothetical protein
148	 34.24	0	155449..155889	-	146	126465061	-	Smar_0149	-	holliday junction resolvase
149	 38.44	0	155979..158150	+	723	126465062	-	Smar_0150	-	metallophosphoesterase
150	 40.88	+1	158234..161044	-	936	126465063	-	Smar_0151	-	membrane-anchored protein to be involved in regulation of amylopullulanase-like protein
151	 41.09	+1	161230..163008	+	592	126465064	-	Smar_0152	-	extracellular solute-binding protein
152	 37.09	0	163211..165418	+	735	126465065	-	Smar_0153	-	binding-protein-dependent transport systems inner membrane component
153	 37.95	0	165449..166531	+	360	126465066	-	Smar_0154	-	ABC transporter related
154	 29.65	-1	166535..167158	+	207	126465067	-	Smar_0155	-	metal dependent phosphohydrolase
155	 37.87	0	167241..168077	+	278	126465068	-	Smar_0156	-	SPFH domain-containing protein/band 7 family protein
156	 35.44	0	168086..169417	+	443	126465069	-	Smar_0157	-	nodulation efficiency protein NfeD
157	 36.60	0	169423..170004	-	193	126465070	-	Smar_0158	-	phosphodiesterase
158	 31.74	-1	169995..170684	-	229	126465071	-	Smar_0159	-	hypothetical protein
159	 29.42	-1	170884..171624	-	246	126465072	-	Smar_0160	-	Mn2+-dependent serine/threonine protein kinase
35.91	MEAN

3.41	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.