IslandPathversion 1.0

IslandPath Analysis: Staphylothermus marinus F1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.91 STD DEV: 3.41
Staphylothermus marinus F1, complete genome - 1..1570485
1570 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
958	 36.85	0	951116..951598	-	160	126465871	-	Smar_0973	-	histidine triad (HIT) protein
959	 28.27	-2	951602..951976	-	124	126465872	-	Smar_0974	-	hypothetical protein
960	 30.10	-1	951987..952790	+	267	126465873	-	Smar_0975	-	peptidase A24A, prepilin type IV
961	 40.94	+1	952808..953767	-	319	126465874	radA	Smar_0976	-	DNA repair and recombination protein RadA
962	 37.32	0	953922..954347	+	141	126465875	-	Smar_0977	-	hypothetical protein
963	 35.01	0	954437..956281	+	614	126465876	-	Smar_0978	-	threonyl-tRNA synthetase
964	 34.33	0	956319..956921	+	200	126465877	-	Smar_0979	-	hypothetical protein
965	 35.25	0	957188..958492	-	434	126465878	-	Smar_0980	-	DNA topoisomerase VI subunit A
966	 38.03	0	958506..960101	-	531	126465879	-	Smar_0981	-	DNA topoisomerase VI subunit B
967	 34.34	0	960292..960687	+	131	126465880	-	Smar_0982	-	hypothetical protein
968	 34.30	0	960709..962259	+	516	126465881	-	Smar_0983	-	type II secretion system protein E
969	 30.38	-1	962240..963595	+	451	126465882	-	Smar_0984	-	hypothetical protein
970	 41.87	+1	963618..965069	-	483	126465883	-	Smar_0985	-	hypothetical protein
971	 32.87	0	965174..966466	-	430	126465884	-	Smar_0986	-	histidyl-tRNA synthetase
972	 31.42	-1	966463..966984	-	173	126465885	-	Smar_0987	-	tRNA intron endonuclease, catalytic-like protein
973	 38.19	0	967852..968922	+	356	126465886	-	Smar_0989	-	translation initiation factor 2B subunit I
974	 32.05	-1	969170..969871	+	233	126465887	-	Smar_0990	-	ribose-5-phosphate isomerase
975	 28.77	-2	969876..970313	+	145	126465888	-	Smar_0991	-	hypothetical protein
976	 37.74	0	970303..970620	+	105	126465889	-	Smar_0992	-	hypothetical protein
977	 37.80	0	970604..971341	+	245	126465890	-	Smar_0993	-	geranylgeranylglyceryl phosphate synthase-like protein
978	 34.48	0	971342..971602	-	86	126465891	-	Smar_0994	-	MazG nucleotide pyrophosphohydrolase
979	 37.10	0	971685..971870	+	61	126465892	-	Smar_0995	-	Sec61beta
980	 33.33	0	971958..972818	+	286	126465893	-	Smar_0996	-	GCN5-related N-acetyltransferase
981	 41.23	+1	972834..973745	-	303	126465894	-	Smar_0997	-	thiamine pyrophosphate binding domain-containing protein
982	 40.97	+1	973751..974929	-	392	126465895	-	Smar_0998	-	pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein
983	 39.36	+1	974944..975225	-	93	126465896	-	Smar_0999	-	pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
984	 37.24	0	975225..975812	-	195	126465897	-	Smar_1000	-	pyruvate/ketoisovalerate oxidoreductase, gamma subunit
985	 34.15	0	975997..976242	+	81	126465898	-	Smar_1001	-	hypothetical protein
986	 36.63	0	976261..977019	-	252	126465899	-	Smar_1002	-	DNA polymerase sliding clamp subunit B
987	 32.29	-1	977119..977502	+	127	126465900	-	Smar_1003	-	hypothetical protein
988	 34.42	0	977495..977770	-	91	126465901	-	Smar_1004	-	hypothetical protein
989	 30.97	-1	977779..979638	-	619	126465902	-	Smar_1005	-	AAA ATPase
990	 33.05	0	979739..982543	+	934	126465903	-	Smar_1006	-	DEAD/DEAH box helicase domain-containing protein
991	 35.46	0	982540..984510	-	656	126465904	-	Smar_1007	-	phosphoadenosine phosphosulfate reductase
992	 36.90	0	984766..989340	+	1524	126465905	-	Smar_1008	-	hypothetical protein
993	 26.06	-2	989525..989854	+	109	126465906	-	Smar_1009	-	hypothetical protein
994	 28.04	-2	989847..991904	+	685	126465907	-	Smar_1010	-	hypothetical protein
995	 41.20	+1	991971..992237	+	88	126465908	-	Smar_1011	-	hypothetical protein
996	 33.70	0	992280..993656	+	458	126465909	-	Smar_1012	-	hypothetical protein
997	 32.38	-1	993798..995471	+	557	126465910	-	Smar_1013	-	AAA ATPase
998	 40.54	+1	995625..995735	+	36	126465911	-	Smar_1014	-	hypothetical protein
999	 37.02	0	995732..996571	+	279	126465912	-	Smar_1015	-	hypothetical protein
1000	 39.31	0	996616..997803	+	395	126465913	rpl3p	Smar_1016	-	50S ribosomal protein L3P
1001	 41.05	+1	997819..998634	+	271	126465914	rpl4lp	Smar_1017	-	50S ribosomal protein L4P
1002	 35.51	0	998631..998906	+	91	126465915	-	Smar_1018	-	50S ribosomal protein L23P
1003	 41.53	+1	998935..999654	+	239	126465916	rpl2p	Smar_1019	-	50S ribosomal protein L2P
1004	 27.12	-2	999651..1000004	-	117	126465917	-	Smar_1020	-	hypothetical protein
1005	 36.49	0	1000070..1000987	+	305	126465918	-	Smar_1021	-	ATPase
1006	 30.96	-1	1000974..1002911	+	645	126465919	-	Smar_1022	-	hypothetical protein
1007	 36.57	0	1002962..1003393	+	143	126465920	rps19p	Smar_1023	-	30S ribosomal protein S19P
1008	 38.61	0	1003412..1003885	+	157	126465921	rpl22p	Smar_1024	-	50S ribosomal protein L22P
1009	 38.52	0	1003888..1004562	+	224	126465922	-	Smar_1025	-	SSU ribosomal protein S3P
1010	 35.78	0	1004574..1004777	+	67	126465923	-	Smar_1026	-	50S ribosomal protein L29P
1011	 35.13	0	1004808..1005086	+	92	126465924	-	Smar_1027	-	ribonuclease P protein subunit Rpp29
1012	 37.57	0	1005097..1005450	+	117	126465925	-	Smar_1028	-	SSU ribosomal protein S17P
1013	 43.97	+2	1005450..1005872	+	140	126465926	rpl14p	Smar_1029	-	50S ribosomal protein L14P
1014	 37.91	0	1005884..1006342	+	152	126465927	rpl24p	Smar_1030	-	50S ribosomal protein L24P
1015	 36.23	0	1006342..1007100	+	252	126465928	-	Smar_1031	-	30S ribosomal protein S4e
1016	 37.39	0	1007100..1007666	+	188	126465929	rpl5p	Smar_1032	-	50S ribosomal protein L5P
1017	 35.76	0	1007690..1007854	+	54	126465930	rps14P	Smar_1033	-	30S ribosomal protein S14P
1018	 37.81	0	1007901..1008302	+	133	126465931	rps8p	Smar_1034	-	30S ribosomal protein S8P
1019	 31.54	-1	1008322..1008879	+	185	126465932	-	Smar_1035	-	50S ribosomal protein L6P
1020	 36.50	0	1008876..1009286	+	136	126465933	-	Smar_1036	-	50S ribosomal protein L32E
1021	 39.00	0	1009307..1009765	+	152	126465934	rpl19e	Smar_1037	-	50S ribosomal protein L19e
1022	 44.50	+2	1009774..1010382	+	202	126465935	rpl18p	Smar_1038	-	50S ribosomal protein L18P
1023	 41.55	+1	1010385..1011029	+	214	126465936	rps5p	Smar_1039	-	30S ribosomal protein S5P
1024	 35.79	0	1011049..1011537	+	162	126465937	rpl30p	Smar_1040	-	50S ribosomal protein L30P
1025	 39.87	+1	1011561..1012019	+	152	126465938	rpl15p	Smar_1041	-	50S ribosomal protein L15P
1026	 38.43	0	1012145..1013575	+	476	126465939	-	Smar_1042	-	preprotein translocase subunit SecY
1027	 31.99	-1	1013581..1014027	+	148	126465940	-	Smar_1043	-	hypothetical protein
1028	 42.29	+1	1014124..1014402	+	92	126465941	-	Smar_1044	-	50S ribosomal protein L34E
1029	 32.58	0	1014500..1015033	+	177	126465942	-	Smar_1045	-	cytidylate kinase
1030	 36.43	0	1015091..1015381	+	96	126465943	-	Smar_1046	-	50S ribosomal protein L14E
1031	 39.30	0	1015523..1015807	+	94	126465944	-	Smar_1047	-	DKCLD domain-containing protein
1032	 39.43	+1	1015826..1016596	+	256	126465945	-	Smar_1048	-	tRNA pseudouridine synthase B
1033	 34.54	0	1016596..1017177	+	193	126465946	-	Smar_1049	-	methyltransferase small
1034	 36.67	0	1017319..1018188	-	289	126465947	-	Smar_1050	-	phosphoesterase, PA-phosphatase related
1035	 40.32	+1	1018390..1019721	-	443	126465948	rbcL	Smar_1051	-	ribulose bisophosphate carboxylase
1036	 32.91	0	1019825..1020295	+	156	126465949	-	Smar_1052	-	archease family protein
1037	 34.40	0	1020284..1020844	-	186	126465950	-	Smar_1053	-	peptidase, zinc-dependent
1038	 38.03	0	1021132..1021833	+	233	126465951	-	Smar_1054	-	nucleotidyl transferase
1039	 39.48	+1	1022279..1023385	+	368	126465952	-	Smar_1055	-	putative glutamate synthase subunit beta
1040	 41.53	+1	1023406..1023942	+	178	126465953	-	Smar_1056	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1041	 33.94	0	1024016..1025491	+	491	126465954	-	Smar_1057	-	NADH/ubiquinone/plastoquinone (complex I)
1042	 34.76	0	1025491..1027035	+	514	126465955	-	Smar_1058	-	NADH/ubiquinone/plastoquinone (complex I)
1043	 36.60	0	1027032..1027337	+	101	126465956	-	Smar_1059	-	hypothetical protein
1044	 33.33	0	1027321..1028226	+	301	126465957	-	Smar_1060	-	hydrogenase-4 component C
1045	 38.31	0	1028256..1029902	+	548	126465958	-	Smar_1061	-	NADH dehydrogenase (ubiquinone), 30 kDa subunit
1046	 35.23	0	1029910..1030437	+	175	126465959	-	Smar_1062	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1047	 39.58	+1	1030427..1030906	+	159	126465960	-	Smar_1063	-	NADH ubiquinone oxidoreductase, 20 kDa subunit
1048	 27.27	-2	1030899..1031162	+	87	126465961	-	Smar_1064	-	hypothetical protein
1049	 32.98	0	1031172..1031456	+	94	126465962	-	Smar_1065	-	multiple resistance and pH regulation protein F
1050	 39.53	+1	1031459..1031845	+	128	126465963	-	Smar_1066	-	monovalent cation/proton antiporter, MnhG/PhaG subunit
1051	 35.27	0	1031842..1032099	+	85	126465964	-	Smar_1067	-	hypothetical protein
1052	 36.98	0	1032103..1032897	+	264	126465965	-	Smar_1068	-	Na+/H+ antiporter MnhB subunit-related protein
1053	 34.88	0	1032909..1033295	+	128	126465966	-	Smar_1069	-	NADH-ubiquinone oxidoreductase, chain 4L
1054	 32.94	0	1033302..1033808	+	168	126465967	-	Smar_1070	-	cation antiporter
1055	 37.02	0	1033830..1035482	+	550	126465968	-	Smar_1071	-	putative monovalent cation/H+ antiporter subunit D
1056	 40.20	+1	1035506..1036510	-	334	126465969	-	Smar_1072	-	alcohol dehydrogenase
1057	 34.28	0	1037039..1037356	+	105	126465970	-	Smar_1073	-	hypothetical protein
35.91	MEAN

3.41	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.