IslandPathversion 1.0

IslandPath Analysis: Staphylococcus epidermidis RP62A



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.10 STD DEV: 3.66
Staphylococcus epidermidis RP62A, complete genome - 1..2616530
2494 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
717	 33.67	0	734395..734982	+	195	57866661	-	SERP0734	-	Ham1 family protein
718	 32.16	0	734975..735484	+	169	57866662	-	SERP0735	-	phosphoesterase, putative
719	 33.33	0	736115..736279	+	54	57866663	-	SERP0736	-	phenol soluble modulin beta 1
720	 33.33	0	736335..736469	+	44	57866664	-	SERP0737	-	phenol soluble modulin beta 1
721	 35.56	0	736521..736655	+	44	57866665	-	SERP0738	-	phenol soluble modulin beta 1
722	 35.56	0	736711..736845	+	44	57866666	-	SERP0739	-	phenol soluble modulin beta 1
723	 31.00	0	736952..737638	+	228	57866674	-	SERP0740	-	HAD superfamily hydrolase
724	 31.97	0	737745..738185	-	146	57866675	-	SERP0741	-	hypothetical protein
725	 31.54	0	738368..739981	+	537	57866676	-	SERP0742	-	hypothetical protein
726	 32.87	0	740125..740556	+	143	57866677	mraZ	SERP0743	-	cell division protein MraZ
727	 35.90	+1	740571..741506	+	311	57866678	mraW	SERP0744	-	S-adenosyl-methyltransferase MraW
728	 33.33	0	741519..741920	+	133	57866679	ftsL	SERP0745	-	cell division protein FtsL
729	 34.36	0	741901..744228	+	775	57866680	pbp1	SERP0746	-	penicillin-binding protein 1
730	 31.88	0	744417..745382	+	321	57866681	mraY	SERP0747	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
731	 33.19	0	745384..746733	+	449	57866690	murD	SERP0748	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
732	 29.81	0	746749..748140	+	463	57866691	-	SERP0749	-	cell division protein FtsQ, putative
733	 33.48	0	748246..749640	+	464	57866692	ftsA	SERP0750	-	cell division protein FtsA
734	 38.57	+1	749673..750857	+	394	57866693	ftsZ	SERP0751	-	cell division protein FtsZ
735	 31.69	0	751273..752064	+	263	57866694	-	SERP0752	-	hypothetical protein
736	 31.69	0	752090..752758	+	222	57866695	-	SERP0753	-	hypothetical protein
737	 34.85	0	752772..753365	+	197	57866696	ylmF	SERP0754	-	ylmF protein
738	 27.15	-1	753377..753667	+	96	57866697	ylmG	SERP0755	-	ylmG protein
739	 32.88	0	753923..754585	+	220	57866705	ylmH	SERP0756	-	ylmH protein
740	 33.49	0	754608..755264	+	218	57866706	-	SERP0757	-	cell-division initiation protein, putative
741	 34.46	0	755578..758328	+	916	57866707	ileS	SERP0758	-	isoleucyl-tRNA synthetase
742	 26.04	-1	758955..759050	+	31	57866708	-	SERP0759	-	hypothetical protein
743	 30.70	0	759097..759894	+	265	57866709	-	SERP0760	-	glyoxalase family protein
744	 30.57	0	759899..760369	+	156	57866710	-	SERP0761	-	LysM domain-containing protein
745	 29.84	0	760458..760943	+	161	57866711	lspA	SERP0762	-	lipoprotein signal peptidase
746	 33.22	0	760946..761863	+	305	57866712	-	SERP0763	-	ribosomal large subunit pseudouridine synthase D
747	 34.85	0	762165..762692	+	175	57866721	pyrR	SERP0764	-	pyrimidine regulatory protein PyrR
748	 34.34	0	762940..764232	+	430	57866722	uraA	SERP0765	-	uracil permease
749	 32.99	0	764258..765139	+	293	57866723	pyrB	SERP0766	-	aspartate carbamoyltransferase catalytic subunit
750	 34.66	0	765157..766434	+	425	57866724	pyrC	SERP0767	-	dihydroorotase
751	 37.51	+1	766435..767535	+	366	57866725	carA	SERP0768	-	carbamoyl phosphate synthase small subunit
752	 36.23	+1	767528..770701	+	1057	57866726	carB	SERP0769	-	carbamoyl phosphate synthase large subunit
753	 34.78	0	770736..771428	+	230	57866727	pyrF	SERP0770	-	orotidine 5'-phosphate decarboxylase
754	 35.13	0	771429..772040	+	203	57866736	pyrE	SERP0771	-	orotate phosphoribosyltransferase
755	 22.71	-2	772066..772272	+	68	57866737	-	SERP0772	-	hypothetical protein
756	 28.89	0	772548..772682	-	44	57866738	-	SERP0773	-	hypothetical protein
757	 37.50	+1	772813..773220	+	135	57866739	-	SERP0774	-	hypothetical protein
758	 33.45	0	773283..774980	-	565	57866740	fbe	SERP0775	-	fibronectin/fibrinogen binding protein
759	 35.58	0	775250..775873	+	207	57866741	gmk	SERP0776	-	guanylate kinase
760	 37.09	+1	775873..776085	+	70	57866742	rpoZ	SERP0777	-	DNA-directed RNA polymerase, omega subunit
761	 34.67	0	776624..777823	+	399	57866743	coaBC	SERP0778	-	phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase
762	 33.50	0	777823..780231	+	802	57866751	priA	SERP0779	-	primosomal protein N'
763	 33.33	0	780337..780540	-	67	57866752	-	SERP0780	-	hypothetical protein
764	 33.13	0	780762..781250	+	162	57866753	def-2	SERP0781	-	polypeptide deformylase
765	 36.76	+1	781243..782175	+	310	57866754	fmt	SERP0782	-	methionyl-tRNA formyltransferase
766	 30.89	0	782172..783479	+	435	57866755	sun	SERP0783	-	sun protein
767	 33.33	0	783482..784576	+	364	57866756	-	SERP0784	-	radical SAM protein
768	 35.48	0	784583..785326	+	247	57866757	-	SERP0785	-	protein phosphatase 2C domain-containing protein
769	 31.33	0	785323..787323	+	666	57866758	-	SERP0786	-	serine/threonine protein kinase, putative
770	 32.76	0	787632..788507	+	291	57866767	-	SERP0787	-	hypothetical protein
771	 32.40	0	788508..789152	+	214	57866768	rpe	SERP0788	-	ribulose-phosphate 3-epimerase
772	 32.23	0	789157..789792	+	211	57866769	-	SERP0789	-	hypothetical protein
773	 38.62	+1	789876..790064	-	62	57866770	rpmB	SERP0790	-	50S ribosomal protein L28
774	 32.53	0	790422..790796	+	124	57866771	-	SERP0791	-	hypothetical protein
775	 34.36	0	790811..792469	+	552	57866772	-	SERP0792	-	DAK2 domain-containing protein
776	 33.33	0	792673..794721	+	682	57866670	recG	SERP0793	-	ATP-dependent DNA helicase RecG
777	 32.64	0	794867..795442	+	191	57866671	-	SERP0794	-	fatty acid biosynthesis transcriptional regulator
778	 35.48	0	795444..796421	+	325	57866672	plsX	SERP0795	-	putative glycerol-3-phosphate acyltransferase PlsX
779	 34.52	0	796423..797352	+	309	57866673	fabD	SERP0796	-	malonyl CoA-acyl carrier protein transacylase
780	 35.92	+1	797345..798079	+	244	57866682	fabG	SERP0797	-	3-oxoacyl-(acyl-carrier-protein) reductase
781	 36.75	+1	798242..798475	+	77	57866683	acpP	SERP0798	-	acyl carrier protein
782	 33.20	0	798590..799327	+	245	57866684	rnc	SERP0799	-	ribonuclease III
783	 32.10	0	799454..803023	+	1189	57866685	-	SERP0800	-	chromosome segregation SMC protein, putative
784	 34.23	0	803020..804246	+	408	57866686	ftsY	SERP0801	-	cell division protein FtsY
785	 27.03	-1	804248..804580	+	110	57866687	-	SERP0802	-	hypothetical protein
786	 35.09	0	804611..805978	+	455	57866688	ffh	SERP0803	-	signal recognition particle protein
787	 35.87	+1	806285..806560	+	91	57866689	rpsP	SERP0804	-	30S ribosomal protein S16
788	 31.55	0	806687..807190	+	167	57866698	rimM	SERP0805	-	16S rRNA processing protein RimM
789	 35.09	0	807190..807927	+	245	57866699	trmD	SERP0806	-	tRNA (guanine-N1)-methyltransferase
790	 37.89	+1	808032..808382	+	116	57866700	rplS	SERP0807	-	50S ribosomal protein L19
791	 28.64	0	811159..813759	-	866	57866701	-	SERP0809	-	hypothetical protein
792	 21.82	-2	813903..814067	+	54	57866702	-	SERP0810	-	hypothetical protein
793	 32.18	0	814088..814951	+	287	57866703	rbgA	SERP0811	-	ribosomal biogenesis GTPase
794	 33.33	0	814956..815726	+	256	57866704	rnhB	SERP0812	-	ribonuclease HII
795	 35.90	+1	815834..817000	+	388	57866713	sucC	SERP0813	-	succinyl-CoA synthetase subunit beta
796	 38.50	+1	817022..817930	+	302	57866714	sucD	SERP0814	-	succinyl-CoA synthetase subunit alpha
797	 33.10	0	818735..819607	+	290	57866715	-	SERP0815	-	DNA processing protein DprA, putative
798	 34.83	0	819790..821859	+	689	57866716	topA	SERP0816	-	DNA topoisomerase I
799	 35.40	0	821884..823191	+	435	57866717	-	SERP0817	-	tRNA (uracil-5-)-methyltransferase Gid
800	 30.19	0	823416..824306	+	296	57866718	xerC	SERP0818	-	tyrosine recombinase XerC
801	 38.67	+1	824310..824852	+	180	57866719	hslV	SERP0819	-	ATP-dependent protease peptidase subunit
802	 34.05	0	824921..826324	+	467	57866720	hslU	SERP0820	-	ATP-dependent protease ATP-binding subunit
803	 31.91	0	826348..827118	+	256	57866728	codY	SERP0821	-	transcriptional repressor CodY
804	 25.00	-1	827327..827422	+	31	57866729	-	SERP0822	-	hypothetical protein
805	 35.11	0	827481..828269	+	262	57866730	rpsB	SERP0823	-	30S ribosomal protein S2
806	 35.49	0	828421..829299	+	292	57866731	tsf	SERP0824	-	elongation factor Ts
807	 36.51	+1	829440..830162	+	240	57866732	pyrH	SERP0825	-	uridylate kinase
808	 33.87	0	830179..830733	+	184	57866733	frr	SERP0826	-	ribosome recycling factor
809	 31.78	0	830954..831724	+	256	57866734	uppS	SERP0827	-	undecaprenyl diphosphate synthase
810	 31.67	0	831728..832510	+	260	57866735	cdsA	SERP0828	-	phosphatidate cytidylyltransferase
811	 32.87	0	832744..834030	+	428	57866744	-	SERP0829	-	membrane-associated zinc metalloprotease, putative
812	 34.39	0	834049..835752	+	567	57866745	proS	SERP0830	-	prolyl-tRNA synthetase
813	 34.01	0	836002..840312	+	1436	57866746	-	SERP0831	-	DNA polymerase III PolC
814	 29.70	0	840491..840958	+	155	57866747	-	SERP0832	-	hypothetical protein
815	 35.54	0	840979..842202	+	407	57866748	nusA	SERP0833	-	transcription elongation factor NusA
816	 30.88	0	842220..842504	+	94	57866749	-	SERP0834	-	hypothetical protein
32.10	MEAN

3.66	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.