IslandPathversion 1.0

IslandPath Analysis: Staphylococcus epidermidis RP62A



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.10 STD DEV: 3.66
Staphylococcus epidermidis RP62A, complete genome - 1..2616530
2494 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
674	 30.82	0	685561..686712	+	383	57866631	-	SERP0690	-	hypothetical protein
675	 30.91	0	687017..687553	+	178	57866632	-	SERP0691	-	hypothetical protein
676	 33.33	0	687766..689127	-	453	57866633	-	SERP0692	-	Mn2+/Fe2+ transporter
677	 31.21	0	689242..689853	-	203	57866634	-	SERP0693	-	hypothetical protein
678	 34.55	0	690030..690851	+	273	57866635	-	SERP0694	-	inositol monophosphatase family protein
679	 29.69	0	691405..691596	-	63	57866636	-	SERP0695	-	hypothetical protein
680	 36.96	+1	691695..693542	+	615	57866637	-	SERP0696	-	GTP-binding protein TypA
681	 33.23	0	693996..695009	+	337	57866638	-	SERP0697	-	ISSep1-like transposase
682	 32.69	0	696078..696233	-	51	57866646	-	SERP0699	-	hypothetical protein
683	 31.68	0	696235..696717	-	160	57866647	-	SERP0700	-	hypothetical protein
684	 30.43	0	696862..697137	+	91	57866648	-	SERP0701	-	hypothetical protein
685	 22.96	-2	697382..697516	-	44	57866649	-	SERP0702	-	hypothetical protein
686	 32.19	0	697539..698762	+	407	57866650	-	SERP0703	-	cell cycle protein FtsW
687	 35.80	+1	699164..702607	+	1147	57866651	pyc	SERP0704	-	pyruvate carboxylase
688	 32.89	0	702756..703664	-	302	57866652	ctaA	SERP0705	-	cytochrome oxidase assembly protein
689	 34.32	0	703965..704876	+	303	57866667	ctaB	SERP0706	-	protoheme IX farnesyltransferase
690	 33.77	0	704902..705363	+	153	57866668	-	SERP0707	-	hypothetical protein
691	 31.15	0	705805..706857	+	350	57866669	-	SERP0708	-	hypothetical protein
692	 34.02	0	706878..707312	+	144	57866615	-	SERP0709	-	hypothetical protein
693	 35.81	+1	707827..708753	-	308	57866616	-	SERP0710	-	glycerophosphoryl diester phosphodiesterase, putative
694	 28.33	-1	708783..708902	+	39	57866623	-	SERP0711	-	hypothetical protein
695	 28.97	0	708974..709225	+	83	57866624	-	SERP0712	-	hypothetical protein
696	 32.56	0	709235..709624	-	129	57866625	-	SERP0713	-	hypothetical protein
697	 32.41	0	709691..710233	+	180	57866626	-	SERP0714	-	hypothetical protein
698	 33.74	0	710235..710720	+	161	57866627	coaD	SERP0715	-	pantetheine-phosphate adenylyltransferase
699	 32.54	0	711124..712257	-	377	57866628	-	SERP0716	-	hypothetical protein
700	 33.15	0	712384..712938	+	184	57866629	-	SERP0717	-	hypothetical protein
701	 35.06	0	713016..713189	+	57	57866630	rpmF	SERP0718	-	50S ribosomal protein L32
702	 41.41	+2	713669..716143	-	824	57866639	-	SERP0719	-	cell wall surface anchor family protein
703	 34.41	0	716482..717222	+	246	57866640	-	SERP0720	-	RNA methyltransferase
704	 34.47	0	717590..718648	+	352	57866641	pheS	SERP0721	-	phenylalanyl-tRNA synthetase subunit alpha
705	 34.91	0	718648..721050	+	800	57866642	pheT	SERP0722	-	phenylalanyl-tRNA synthetase, beta subunit
706	 32.79	0	721102..722028	-	308	57866643	rnhC	SERP0723	-	ribonuclease HIII
707	 29.96	0	722287..722553	+	88	57866644	-	SERP0724	-	hypothetical protein
708	 27.59	-1	722554..723075	+	173	57866645	-	SERP0725	-	bacteriocin production protein, putative
709	 33.74	0	723150..724859	+	569	57866653	-	SERP0726	-	hypothetical protein
710	 33.89	0	724869..727217	+	782	57866654	-	SERP0727	-	recombination and DNA strand exchange inhibitor protein
711	 33.97	0	727476..727790	+	104	57866655	trxA	SERP0728	-	thioredoxin
712	 33.45	0	727888..729672	+	594	57866656	uvrC	SERP0729	-	excinuclease ABC subunit C
713	 32.68	0	730038..730652	+	204	57866657	sdhC	SERP0730	-	succinate dehydrogenase, cytochrome b558 subunit
714	 37.86	+1	730806..732572	+	588	57866658	sdhA	SERP0731	-	succinate dehydrogenase flavoprotein subunit
715	 36.06	+1	732572..733414	+	280	57866659	sdhB	SERP0732	-	succinate dehydrogenase iron-sulfur subunit
716	 34.95	0	733577..734380	+	267	57866660	murI	SERP0733	-	glutamate racemase
717	 33.67	0	734395..734982	+	195	57866661	-	SERP0734	-	Ham1 family protein
718	 32.16	0	734975..735484	+	169	57866662	-	SERP0735	-	phosphoesterase, putative
719	 33.33	0	736115..736279	+	54	57866663	-	SERP0736	-	phenol soluble modulin beta 1
720	 33.33	0	736335..736469	+	44	57866664	-	SERP0737	-	phenol soluble modulin beta 1
721	 35.56	0	736521..736655	+	44	57866665	-	SERP0738	-	phenol soluble modulin beta 1
722	 35.56	0	736711..736845	+	44	57866666	-	SERP0739	-	phenol soluble modulin beta 1
723	 31.00	0	736952..737638	+	228	57866674	-	SERP0740	-	HAD superfamily hydrolase
724	 31.97	0	737745..738185	-	146	57866675	-	SERP0741	-	hypothetical protein
725	 31.54	0	738368..739981	+	537	57866676	-	SERP0742	-	hypothetical protein
726	 32.87	0	740125..740556	+	143	57866677	mraZ	SERP0743	-	cell division protein MraZ
727	 35.90	+1	740571..741506	+	311	57866678	mraW	SERP0744	-	S-adenosyl-methyltransferase MraW
728	 33.33	0	741519..741920	+	133	57866679	ftsL	SERP0745	-	cell division protein FtsL
729	 34.36	0	741901..744228	+	775	57866680	pbp1	SERP0746	-	penicillin-binding protein 1
730	 31.88	0	744417..745382	+	321	57866681	mraY	SERP0747	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
731	 33.19	0	745384..746733	+	449	57866690	murD	SERP0748	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
732	 29.81	0	746749..748140	+	463	57866691	-	SERP0749	-	cell division protein FtsQ, putative
733	 33.48	0	748246..749640	+	464	57866692	ftsA	SERP0750	-	cell division protein FtsA
734	 38.57	+1	749673..750857	+	394	57866693	ftsZ	SERP0751	-	cell division protein FtsZ
735	 31.69	0	751273..752064	+	263	57866694	-	SERP0752	-	hypothetical protein
736	 31.69	0	752090..752758	+	222	57866695	-	SERP0753	-	hypothetical protein
737	 34.85	0	752772..753365	+	197	57866696	ylmF	SERP0754	-	ylmF protein
738	 27.15	-1	753377..753667	+	96	57866697	ylmG	SERP0755	-	ylmG protein
739	 32.88	0	753923..754585	+	220	57866705	ylmH	SERP0756	-	ylmH protein
740	 33.49	0	754608..755264	+	218	57866706	-	SERP0757	-	cell-division initiation protein, putative
741	 34.46	0	755578..758328	+	916	57866707	ileS	SERP0758	-	isoleucyl-tRNA synthetase
742	 26.04	-1	758955..759050	+	31	57866708	-	SERP0759	-	hypothetical protein
743	 30.70	0	759097..759894	+	265	57866709	-	SERP0760	-	glyoxalase family protein
744	 30.57	0	759899..760369	+	156	57866710	-	SERP0761	-	LysM domain-containing protein
745	 29.84	0	760458..760943	+	161	57866711	lspA	SERP0762	-	lipoprotein signal peptidase
746	 33.22	0	760946..761863	+	305	57866712	-	SERP0763	-	ribosomal large subunit pseudouridine synthase D
747	 34.85	0	762165..762692	+	175	57866721	pyrR	SERP0764	-	pyrimidine regulatory protein PyrR
748	 34.34	0	762940..764232	+	430	57866722	uraA	SERP0765	-	uracil permease
749	 32.99	0	764258..765139	+	293	57866723	pyrB	SERP0766	-	aspartate carbamoyltransferase catalytic subunit
750	 34.66	0	765157..766434	+	425	57866724	pyrC	SERP0767	-	dihydroorotase
751	 37.51	+1	766435..767535	+	366	57866725	carA	SERP0768	-	carbamoyl phosphate synthase small subunit
752	 36.23	+1	767528..770701	+	1057	57866726	carB	SERP0769	-	carbamoyl phosphate synthase large subunit
753	 34.78	0	770736..771428	+	230	57866727	pyrF	SERP0770	-	orotidine 5'-phosphate decarboxylase
754	 35.13	0	771429..772040	+	203	57866736	pyrE	SERP0771	-	orotate phosphoribosyltransferase
755	 22.71	-2	772066..772272	+	68	57866737	-	SERP0772	-	hypothetical protein
756	 28.89	0	772548..772682	-	44	57866738	-	SERP0773	-	hypothetical protein
757	 37.50	+1	772813..773220	+	135	57866739	-	SERP0774	-	hypothetical protein
758	 33.45	0	773283..774980	-	565	57866740	fbe	SERP0775	-	fibronectin/fibrinogen binding protein
759	 35.58	0	775250..775873	+	207	57866741	gmk	SERP0776	-	guanylate kinase
760	 37.09	+1	775873..776085	+	70	57866742	rpoZ	SERP0777	-	DNA-directed RNA polymerase, omega subunit
761	 34.67	0	776624..777823	+	399	57866743	coaBC	SERP0778	-	phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase
762	 33.50	0	777823..780231	+	802	57866751	priA	SERP0779	-	primosomal protein N'
763	 33.33	0	780337..780540	-	67	57866752	-	SERP0780	-	hypothetical protein
764	 33.13	0	780762..781250	+	162	57866753	def-2	SERP0781	-	polypeptide deformylase
765	 36.76	+1	781243..782175	+	310	57866754	fmt	SERP0782	-	methionyl-tRNA formyltransferase
766	 30.89	0	782172..783479	+	435	57866755	sun	SERP0783	-	sun protein
767	 33.33	0	783482..784576	+	364	57866756	-	SERP0784	-	radical SAM protein
768	 35.48	0	784583..785326	+	247	57866757	-	SERP0785	-	protein phosphatase 2C domain-containing protein
769	 31.33	0	785323..787323	+	666	57866758	-	SERP0786	-	serine/threonine protein kinase, putative
770	 32.76	0	787632..788507	+	291	57866767	-	SERP0787	-	hypothetical protein
771	 32.40	0	788508..789152	+	214	57866768	rpe	SERP0788	-	ribulose-phosphate 3-epimerase
772	 32.23	0	789157..789792	+	211	57866769	-	SERP0789	-	hypothetical protein
773	 38.62	+1	789876..790064	-	62	57866770	rpmB	SERP0790	-	50S ribosomal protein L28
32.10	MEAN

3.66	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.